Wall clock time and date at job start Mon Mar 30 2020 03:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36039 * 126.34886 * 2 1 4 4 N 1.30110 * 110.09997 * 179.81385 * 3 2 1 5 5 C 1.35788 * 109.63926 * 0.44710 * 4 3 2 6 6 C 1.39743 * 133.59812 * 179.72436 * 5 4 3 7 7 C 1.36607 * 119.88751 * 180.02562 * 6 5 4 8 8 C 1.38776 * 120.66415 * 0.02562 * 7 6 5 9 9 C 1.37856 * 120.45411 * 359.97426 * 8 7 6 10 10 C 1.50701 * 120.15309 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.47163 * 264.97407 * 10 9 8 12 12 C 1.50696 * 109.46773 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00591 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99971 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99890 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00090 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47116 * 60.00509 * 16 14 12 18 18 H 1.48504 * 109.47242 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47597 * 300.00369 * 16 14 12 20 20 C 1.38051 * 126.34991 * 180.30318 * 2 1 3 21 21 H 1.09002 * 109.47391 * 269.69437 * 1 2 3 22 22 H 1.09001 * 109.46813 * 149.69493 * 1 2 3 23 23 H 1.09004 * 109.47041 * 29.69620 * 1 2 3 24 24 H 1.07997 * 124.95142 * 359.97027 * 3 2 1 25 25 H 1.08005 * 120.06097 * 0.02562 * 6 5 4 26 26 H 1.07999 * 119.66511 * 179.97438 * 7 6 5 27 27 H 1.08001 * 119.77200 * 179.97438 * 8 7 6 28 28 H 1.08998 * 109.47185 * 24.97807 * 10 9 8 29 29 H 1.08995 * 109.46812 * 144.97349 * 10 9 8 30 30 H 1.08994 * 109.47032 * 299.99927 * 11 10 9 31 31 H 1.08995 * 109.47304 * 60.00244 * 11 10 9 32 32 H 0.97000 * 120.00327 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2713 1.0957 0.0000 4 7 3.5204 0.7316 0.0040 5 6 3.6007 -0.6239 -0.0032 6 6 4.6680 -1.5259 -0.0080 7 6 4.4233 -2.8699 -0.0156 8 6 3.1221 -3.3524 -0.0192 9 6 2.0538 -2.4811 -0.0146 10 6 0.6436 -3.0124 -0.0180 11 6 0.1222 -3.0659 -1.4554 12 6 -1.2882 -3.5967 -1.4587 13 1 -1.7649 -3.8691 -0.5286 14 6 -1.9702 -3.7346 -2.6491 15 7 -1.3896 -3.4035 -3.7817 16 14 -3.7182 -4.3932 -2.6532 17 1 -4.5857 -3.4997 -1.8443 18 1 -4.2244 -4.4451 -4.0483 19 1 -3.7341 -5.7589 -2.0703 20 6 2.2832 -1.1119 -0.0059 21 1 -0.3634 -0.0055 1.0276 22 1 -0.3633 -0.8873 -0.5186 23 1 -0.3633 0.8927 -0.5091 24 1 1.9250 2.1187 -0.0005 25 1 5.6846 -1.1613 -0.0056 26 1 5.2508 -3.5638 -0.0197 27 1 2.9452 -4.4178 -0.0257 28 1 0.6319 -4.0147 0.4103 29 1 0.0068 -2.3564 0.5753 30 1 0.1339 -2.0637 -1.8836 31 1 0.7590 -3.7220 -2.0488 32 1 -1.8691 -3.5008 -4.6192 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261236945.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:51 Heat of formation + Delta-G solvation = 41.912437 kcal Electronic energy + Delta-G solvation = -15529.308256 eV Core-core repulsion = 13068.294945 eV Total energy + Delta-G solvation = -2461.013311 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.04237 -38.53897 -36.47490 -34.91284 -33.25624 -30.73799 -30.21681 -27.97357 -26.54994 -24.09977 -23.12567 -22.86593 -20.64374 -18.55993 -18.06525 -17.64571 -16.73244 -16.55554 -16.43336 -15.75190 -14.76705 -14.61144 -14.44805 -14.20129 -14.05389 -13.37077 -13.23794 -12.91620 -12.82723 -12.58834 -12.35083 -12.31620 -11.75867 -11.67190 -11.34009 -11.03832 -10.79422 -10.56863 -9.26566 -8.83608 -8.20217 -6.33415 0.08712 0.63980 1.40835 1.43042 1.51077 1.82060 1.91010 2.40096 2.95733 3.12541 3.41833 3.74109 3.96739 4.05467 4.14195 4.40483 4.41080 4.52026 4.65420 4.72678 4.78752 4.84424 4.90205 5.04763 5.32162 5.48151 5.50938 5.58978 5.63985 5.78911 5.82264 6.02604 6.19813 6.30650 6.83225 6.92449 7.36870 8.90301 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.033585 B = 0.007149 C = 0.006359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.507019 B = 3915.696350 C = 4402.465903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.491 5.491 3 C 0.260 3.740 4 N -0.535 5.535 5 C 0.018 3.982 6 C -0.094 4.094 7 C -0.115 4.115 8 C -0.122 4.122 9 C -0.076 4.076 10 C -0.067 4.067 11 C 0.044 3.956 12 C -0.541 4.541 13 H 0.065 0.935 14 C 0.004 3.996 15 N -0.932 5.932 16 Si 0.963 3.037 17 H -0.263 1.263 18 H -0.287 1.287 19 H -0.268 1.268 20 C 0.025 3.975 21 H 0.091 0.909 22 H 0.079 0.921 23 H 0.113 0.887 24 H 0.257 0.743 25 H 0.142 0.858 26 H 0.161 0.839 27 H 0.139 0.861 28 H 0.068 0.932 29 H 0.065 0.935 30 H -0.009 1.009 31 H -0.016 1.016 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.254 5.646 8.774 11.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.180 5.180 3 C -0.025 4.025 4 N -0.255 5.255 5 C -0.100 4.100 6 C -0.113 4.113 7 C -0.135 4.135 8 C -0.142 4.142 9 C -0.078 4.078 10 C -0.105 4.105 11 C 0.007 3.993 12 C -0.579 4.579 13 H 0.083 0.917 14 C -0.194 4.194 15 N -0.572 5.572 16 Si 0.787 3.213 17 H -0.187 1.187 18 H -0.212 1.212 19 H -0.193 1.193 20 C -0.084 4.084 21 H 0.110 0.890 22 H 0.097 0.903 23 H 0.131 0.869 24 H 0.273 0.727 25 H 0.160 0.840 26 H 0.178 0.822 27 H 0.156 0.844 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.009 0.991 31 H 0.003 0.997 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.758 6.191 8.606 12.065 hybrid contribution -1.634 -0.808 -0.535 1.900 sum 4.124 5.384 8.072 10.542 Atomic orbital electron populations 1.22478 0.74671 1.06263 1.04603 1.45464 1.08270 1.05181 1.59081 1.26179 0.84588 0.94726 0.96967 1.70388 1.19830 1.10766 1.24538 1.19489 0.92848 0.90909 1.06763 1.20223 0.97482 0.91884 1.01734 1.20929 0.97028 0.94968 1.00584 1.21106 0.91940 0.99765 1.01398 1.19327 0.97327 0.89547 1.01631 1.20637 0.90774 1.00497 0.98550 1.18877 0.94552 0.94716 0.91106 1.21618 0.99679 1.43338 0.93287 0.91718 1.25946 1.02701 0.95592 0.95157 1.70110 1.39337 1.49295 0.98495 0.85538 0.79312 0.79319 0.77122 1.18743 1.21224 1.19321 1.19019 0.91714 0.89723 1.07947 0.89046 0.90279 0.86892 0.72719 0.84013 0.82194 0.84354 0.91347 0.91689 0.99053 0.99747 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.69 10.00 127.77 1.28 2.97 16 2 N -0.49 -15.90 3.21 -543.65 -1.74 -17.64 16 3 C 0.26 7.31 12.50 180.05 2.25 9.56 16 4 N -0.53 -18.46 11.27 -192.03 -2.17 -20.63 16 5 C 0.02 0.66 7.23 39.45 0.29 0.94 16 6 C -0.09 -2.97 10.05 22.25 0.22 -2.74 16 7 C -0.12 -3.34 9.96 22.02 0.22 -3.12 16 8 C -0.12 -4.13 9.67 22.31 0.22 -3.92 16 9 C -0.08 -2.93 5.14 -19.81 -0.10 -3.03 16 10 C -0.07 -2.77 4.59 29.85 0.14 -2.63 16 11 C 0.04 2.30 4.32 29.85 0.13 2.42 16 12 C -0.54 -29.49 9.11 25.60 0.23 -29.25 16 13 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 14 C 0.00 0.23 5.46 84.66 0.46 0.70 16 15 N -0.93 -55.83 13.29 21.45 0.28 -55.54 16 16 Si 0.96 42.71 29.54 68.60 2.03 44.73 16 17 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 18 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 C 0.03 0.96 6.77 38.86 0.26 1.23 16 21 H 0.09 2.09 8.14 -2.39 -0.02 2.08 16 22 H 0.08 2.87 4.11 -2.39 -0.01 2.86 16 23 H 0.11 2.37 8.14 -2.38 -0.02 2.35 16 24 H 0.26 4.09 8.06 -2.91 -0.02 4.07 16 25 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 26 H 0.16 3.35 8.06 -2.91 -0.02 3.32 16 27 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 28 H 0.07 2.70 8.05 -2.39 -0.02 2.68 16 29 H 0.06 2.52 6.08 -2.39 -0.01 2.51 16 30 H -0.01 -0.49 6.81 -2.39 -0.02 -0.51 16 31 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 32 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -70.33 271.18 5.11 -65.22 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.12 Total: 10.75 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 5.59 Total: -26.89 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -3.62 Total: -93.81 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -70.33 5.11 -65.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261236945.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.129 kcal (2) G-P(sol) polarization free energy of solvation -70.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds