Wall clock time and date at job start Mon Mar 30 2020 03:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 13 13 N 1.30234 * 126.10918 * 299.69442 * 12 2 1 14 14 N 1.39876 * 110.08526 * 179.84436 * 13 12 2 15 15 C 1.46501 * 125.46149 * 180.16976 * 14 13 12 16 16 C 1.37039 * 109.07782 * 0.42634 * 14 13 12 17 17 C 1.39286 * 133.85041 * 179.75510 * 16 14 13 18 18 C 1.36595 * 119.85202 * 180.02562 * 17 16 14 19 19 C 1.38964 * 120.81133 * 359.95807 * 18 17 16 20 20 C 1.36465 * 120.63178 * 0.02562 * 19 18 17 21 21 C 1.39943 * 119.63775 * 0.02562 * 20 19 18 22 22 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 23 23 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 26 26 H 1.09009 * 109.46577 * 270.30662 * 15 14 13 27 27 H 1.08997 * 109.47387 * 30.30098 * 15 14 13 28 28 H 1.08998 * 109.47122 * 150.30884 * 15 14 13 29 29 H 1.07995 * 120.07523 * 0.05025 * 17 16 14 30 30 H 1.07992 * 119.59048 * 179.97438 * 18 17 16 31 31 H 1.08001 * 119.68614 * 179.97438 * 19 18 17 32 32 H 1.08000 * 120.18268 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.6422 -0.5352 4.4055 10 1 1.3588 -0.9384 5.1155 11 1 2.4973 -2.5585 3.7156 12 6 2.0323 -0.7105 -1.2304 13 7 1.7968 -1.9508 -1.5504 14 7 2.4223 -2.2613 -2.7623 15 6 2.3746 -3.5621 -3.4346 16 6 3.0917 -1.1554 -3.2171 17 6 3.8722 -0.8943 -4.3408 18 6 4.4184 0.3454 -4.5161 19 6 4.2051 1.3552 -3.5856 20 6 3.4446 1.1285 -2.4754 21 6 2.8750 -0.1336 -2.2727 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.7164 1.1670 3.4843 26 1 3.2018 -4.1812 -3.0870 27 1 1.4302 -4.0554 -3.2049 28 1 2.4566 -3.4175 -4.5118 29 1 4.0449 -1.6700 -5.0720 30 1 5.0232 0.5431 -5.3886 31 1 4.6461 2.3286 -3.7421 32 1 3.2839 1.9185 -1.7567 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261245897.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:12 Heat of formation + Delta-G solvation = 79.313946 kcal Electronic energy + Delta-G solvation = -15516.265781 eV Core-core repulsion = 13056.874321 eV Total energy + Delta-G solvation = -2459.391460 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.65524 -36.75641 -34.74571 -32.56107 -30.19620 -29.95557 -29.17681 -25.72242 -25.08418 -22.71354 -21.70316 -21.24743 -18.67179 -16.58761 -16.46754 -15.80432 -14.94989 -14.82534 -14.58855 -13.67748 -13.54754 -13.00476 -12.79292 -12.56185 -12.27082 -11.68440 -11.47684 -11.23416 -10.92779 -10.75122 -10.72660 -10.47070 -10.19602 -9.97068 -9.54616 -9.36924 -8.87188 -8.37120 -8.12374 -7.27251 -6.00617 -4.05923 1.45355 1.94383 2.99336 3.28024 3.32709 3.38957 3.45409 4.25542 4.46367 4.92046 4.97539 5.21789 5.31144 5.34778 5.42895 5.59607 5.66663 5.75185 5.79012 6.22001 6.23231 6.41208 6.72805 6.87654 6.90722 6.98342 7.17315 7.22181 7.41547 7.58108 7.65124 7.88420 8.07855 8.31926 8.55603 8.94673 9.57683 11.05530 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029753 B = 0.007791 C = 0.007076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.856265 B = 3592.854898 C = 3956.113936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.113 3.887 3 H 0.049 0.951 4 C -0.502 4.502 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.153 3.847 13 N -0.260 5.260 14 N -0.428 5.428 15 C 0.118 3.882 16 C 0.123 3.877 17 C -0.154 4.154 18 C -0.077 4.077 19 C -0.179 4.179 20 C -0.026 4.026 21 C -0.176 4.176 22 H 0.009 0.991 23 H 0.033 0.967 24 H 0.090 0.910 25 H 0.262 0.738 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.395 -1.925 -12.462 13.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.092 3.908 3 H 0.067 0.933 4 C -0.541 4.541 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C -0.025 4.025 13 N -0.071 5.071 14 N -0.215 5.215 15 C -0.024 4.024 16 C 0.008 3.992 17 C -0.176 4.176 18 C -0.098 4.098 19 C -0.199 4.199 20 C -0.046 4.046 21 C -0.184 4.184 22 H 0.028 0.972 23 H 0.053 0.947 24 H 0.108 0.892 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.697 -3.128 -12.071 13.006 hybrid contribution 0.814 0.050 0.478 0.946 sum 4.511 -3.078 -11.592 12.815 Atomic orbital electron populations 1.21759 0.96831 0.99915 1.00386 1.17510 0.93130 0.94641 0.85485 0.93339 1.21004 1.31323 1.12206 0.89522 0.92445 1.24909 0.95038 0.95019 0.98880 1.69874 1.36694 1.22852 1.23555 0.86524 0.78559 0.80123 0.82436 1.20660 1.21132 1.19928 1.24702 0.92499 0.89860 0.95475 1.76783 1.17615 1.16518 0.96138 1.48308 1.44761 1.09315 1.19086 1.21522 1.03221 0.81796 0.95846 1.18897 0.95984 0.88428 0.95930 1.19663 1.02661 0.98260 0.97008 1.20563 0.98215 0.92424 0.98601 1.20534 1.03669 0.99525 0.96167 1.20467 0.93153 0.94794 0.96201 1.20136 1.05846 0.95308 0.97146 0.97225 0.94739 0.89176 0.92847 0.92112 0.89939 0.90742 0.86695 0.86199 0.86224 0.85394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 8.95 37.16 0.33 -2.92 16 2 C 0.11 2.91 2.74 -92.92 -0.25 2.66 16 3 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 4 C -0.50 -14.10 8.54 -34.44 -0.29 -14.40 16 5 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 6 C 0.06 1.74 5.31 -17.82 -0.09 1.65 16 7 N -0.89 -25.12 11.33 55.43 0.63 -24.49 16 8 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.15 3.64 5.88 -80.19 -0.47 3.17 16 13 N -0.26 -6.07 12.40 34.84 0.43 -5.64 16 14 N -0.43 -8.28 4.05 -65.47 -0.27 -8.55 16 15 C 0.12 1.60 11.40 59.85 0.68 2.28 16 16 C 0.12 2.33 6.87 -84.17 -0.58 1.75 16 17 C -0.15 -2.31 9.97 -39.79 -0.40 -2.71 16 18 C -0.08 -1.05 9.96 -39.91 -0.40 -1.45 16 19 C -0.18 -2.63 9.97 -39.95 -0.40 -3.03 16 20 C -0.03 -0.46 10.07 -39.58 -0.40 -0.86 16 21 C -0.18 -3.70 6.33 -105.21 -0.67 -4.36 16 22 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 23 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.09 2.39 6.08 -51.93 -0.32 2.08 16 25 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 31 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 277.81 15.07 4.19 4.19 Total: -1.00 -31.11 277.81 -7.06 -38.16 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -4.08 Total: -2.03 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -2.93 Total: -18.23 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.79 Total: -38.68 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.11 -7.06 -38.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261245897.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.479 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds