Wall clock time and date at job start Mon Mar 30 2020 03:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47288 * 2 1 4 4 C 1.50700 * 109.46997 * 239.99809 * 2 1 3 5 5 H 1.07996 * 119.99751 * 275.01871 * 4 2 1 6 6 C 1.37877 * 119.99849 * 95.02447 * 4 2 1 7 7 N 1.31515 * 119.99682 * 184.91668 * 6 4 2 8 8 Si 1.86798 * 120.00199 * 4.91161 * 6 4 2 9 9 H 1.48505 * 109.47033 * 84.83523 * 8 6 4 10 10 H 1.48497 * 109.47197 * 204.83800 * 8 6 4 11 11 H 1.48498 * 109.47012 * 324.83985 * 8 6 4 12 12 C 1.50710 * 109.47181 * 119.99945 * 2 1 3 13 13 C 1.38772 * 119.77067 * 59.99721 * 12 2 1 14 14 C 1.36600 * 120.66498 * 179.97438 * 13 12 2 15 15 C 1.39739 * 119.88628 * 0.30295 * 14 13 12 16 16 N 1.35788 * 133.59465 * 180.37682 * 15 14 13 17 17 C 1.30114 * 109.64210 * 179.55742 * 16 15 14 18 18 N 1.36035 * 110.09841 * 359.75601 * 17 16 15 19 19 C 1.46497 * 126.35118 * 179.97438 * 18 17 16 20 20 C 1.38053 * 107.30607 * 0.02562 * 18 17 16 21 21 C 1.37857 * 119.77156 * 240.01999 * 12 2 1 22 22 H 1.09001 * 109.47368 * 174.98434 * 1 2 3 23 23 H 1.09008 * 109.46966 * 294.97981 * 1 2 3 24 24 H 1.08998 * 109.46966 * 54.97941 * 1 2 3 25 25 H 0.97004 * 119.99698 * 180.02562 * 7 6 4 26 26 H 1.08005 * 119.67009 * 0.02562 * 13 12 2 27 27 H 1.08002 * 120.05763 * 180.02562 * 14 13 12 28 28 H 1.08002 * 124.95247 * 179.73445 * 17 16 15 29 29 H 1.08998 * 109.47697 * 270.04591 * 19 18 17 30 30 H 1.09004 * 109.46963 * 30.04448 * 19 18 17 31 31 H 1.09000 * 109.47445 * 150.04096 * 19 18 17 32 32 H 1.07998 * 120.15276 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1351 -1.7855 -1.2290 6 6 2.3606 0.0121 -2.3579 7 7 2.7063 -0.6132 -3.4620 8 14 2.3145 1.8791 -2.3171 9 1 3.6002 2.3944 -1.7816 10 1 2.1070 2.3992 -3.6924 11 1 1.1996 2.3277 -1.4448 12 6 2.0324 -0.7104 1.2305 13 6 1.6942 -2.0390 1.4455 14 6 2.1398 -2.7008 2.5542 15 6 2.9394 -2.0358 3.4876 16 7 3.5271 -2.4105 4.6529 17 6 4.1873 -1.4067 5.1524 18 7 4.0732 -0.3215 4.3400 19 6 4.6737 0.9962 4.5618 20 6 3.2857 -0.6918 3.2683 21 6 2.8243 -0.0358 2.1351 22 1 -0.3634 -1.0237 -0.0898 23 1 -0.3633 0.4340 0.9316 24 1 -0.3633 0.5897 -0.8416 25 1 2.9377 -0.1049 -4.2551 26 1 1.0730 -2.5553 0.7284 27 1 1.8710 -3.7349 2.7115 28 1 4.7444 -1.4312 6.0773 29 1 3.9835 1.6189 5.1309 30 1 5.6039 0.8825 5.1184 31 1 4.8805 1.4676 3.6010 32 1 3.0845 0.9981 1.9629 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261254418.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:20 Heat of formation + Delta-G solvation = 65.695799 kcal Electronic energy + Delta-G solvation = -15461.633906 eV Core-core repulsion = 13001.651919 eV Total energy + Delta-G solvation = -2459.981987 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.68926 -37.52954 -34.26159 -33.41875 -31.43649 -30.00951 -27.83256 -26.78071 -25.19017 -22.79662 -22.17808 -20.39408 -19.49544 -17.12492 -16.72496 -16.10807 -15.53387 -15.17799 -14.25595 -13.79709 -13.44549 -13.31047 -13.11489 -12.65010 -12.50267 -12.19380 -11.99784 -11.59565 -11.14278 -10.96933 -10.65916 -10.46760 -10.01517 -9.85449 -9.76383 -9.51811 -9.11878 -8.57605 -7.77355 -7.41054 -6.11195 -4.10033 1.52181 2.11465 2.88066 3.20345 3.25242 3.33301 3.34078 4.37482 4.47603 4.60961 4.72680 4.89072 5.10229 5.22609 5.32617 5.53235 5.70299 5.93762 5.94808 6.07166 6.23385 6.40132 6.61411 6.64534 6.73720 6.93263 7.00137 7.03893 7.27846 7.44086 7.48610 7.55704 7.71826 8.22180 8.47821 8.94364 9.50260 11.01759 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032685 B = 0.007690 C = 0.006938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.446394 B = 3640.377481 C = 4034.737822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.040 3.960 3 H 0.038 0.962 4 C -0.505 4.505 5 H 0.079 0.921 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.873 3.127 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.263 1.263 12 C -0.001 4.001 13 C -0.108 4.108 14 C -0.071 4.071 15 C 0.020 3.980 16 N -0.496 5.496 17 C 0.234 3.766 18 N -0.502 5.502 19 C 0.083 3.917 20 C 0.055 3.945 21 C -0.138 4.138 22 H 0.050 0.950 23 H 0.024 0.976 24 H 0.046 0.954 25 H 0.264 0.736 26 H 0.131 0.869 27 H 0.121 0.879 28 H 0.205 0.795 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.857 3.768 14.760 15.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.021 3.979 3 H 0.056 0.944 4 C -0.543 4.543 5 H 0.097 0.903 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.701 3.299 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.188 1.188 12 C -0.003 4.003 13 C -0.128 4.128 14 C -0.091 4.091 15 C -0.097 4.097 16 N -0.215 5.215 17 C -0.051 4.051 18 N -0.195 5.195 19 C -0.060 4.060 20 C -0.053 4.053 21 C -0.159 4.159 22 H 0.069 0.931 23 H 0.043 0.957 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.148 0.852 27 H 0.139 0.861 28 H 0.222 0.778 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.899 3.100 14.913 15.350 hybrid contribution 0.385 1.905 -0.381 1.981 sum 2.284 5.005 14.532 15.539 Atomic orbital electron populations 1.21995 0.97785 1.00886 0.98550 1.18339 0.92799 0.95506 0.91221 0.94428 1.20945 1.43642 0.95603 0.94096 0.90302 1.25034 0.94521 0.98157 0.95283 1.69894 1.46081 1.35797 1.01684 0.86914 0.79042 0.86679 0.77276 1.20261 1.21459 1.18808 1.20192 0.92588 0.93774 0.93721 1.20627 1.01051 0.94559 0.96583 1.19963 0.97080 0.99256 0.92803 1.18909 1.03690 0.91828 0.95241 1.70312 1.13366 1.28016 1.09843 1.25057 1.00843 0.81750 0.97493 1.45151 1.42873 1.11964 1.19464 1.21871 0.98412 0.82169 1.03501 1.18907 0.98379 0.96367 0.91612 1.19795 1.03334 0.99699 0.93089 0.93072 0.95684 0.93508 0.92570 0.85160 0.86122 0.77830 0.91232 0.89848 0.89921 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 8.91 37.16 0.33 -2.44 16 2 C 0.04 0.92 2.13 -92.92 -0.20 0.73 16 3 H 0.04 0.86 5.01 -51.93 -0.26 0.60 16 4 C -0.51 -13.72 8.63 -34.44 -0.30 -14.02 16 5 H 0.08 2.32 7.62 -52.49 -0.40 1.92 16 6 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 7 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 8 Si 0.87 20.93 26.99 -169.99 -4.59 16.34 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.26 -5.98 6.82 56.52 0.39 -5.59 16 12 C 0.00 -0.02 4.78 -104.56 -0.50 -0.52 16 13 C -0.11 -2.15 8.56 -39.98 -0.34 -2.49 16 14 C -0.07 -1.34 10.05 -39.61 -0.40 -1.74 16 15 C 0.02 0.39 7.23 -84.70 -0.61 -0.23 16 16 N -0.50 -8.79 11.27 -12.05 -0.14 -8.93 16 17 C 0.23 3.21 12.50 -89.78 -1.12 2.09 16 18 N -0.50 -7.19 3.21 -123.19 -0.39 -7.58 16 19 C 0.08 0.77 11.18 59.85 0.67 1.44 16 20 C 0.05 1.01 6.87 -83.99 -0.58 0.43 16 21 C -0.14 -2.67 9.67 -39.50 -0.38 -3.06 16 22 H 0.05 1.02 7.54 -51.93 -0.39 0.62 16 23 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.13 2.52 7.51 -52.48 -0.39 2.13 16 27 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 28 H 0.21 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.11 2.00 7.93 -52.49 -0.42 1.58 16 LS Contribution 273.19 15.07 4.12 4.12 Total: -1.00 -32.55 273.19 -7.73 -40.28 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -3.97 Total: -0.19 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -3.53 Total: -17.89 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.24 Total: -42.65 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.59 Total: 16.34 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.55 -7.73 -40.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254418.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.972 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds