Wall clock time and date at job start Mon Mar 30 2020 03:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47288 * 2 1 4 4 C 1.50700 * 109.46997 * 239.99809 * 2 1 3 5 5 H 1.07996 * 119.99751 * 275.01871 * 4 2 1 6 6 C 1.37877 * 119.99849 * 95.02447 * 4 2 1 7 7 N 1.31515 * 119.99682 * 184.91668 * 6 4 2 8 8 Si 1.86798 * 120.00199 * 4.91161 * 6 4 2 9 9 H 1.48505 * 109.47033 * 84.83523 * 8 6 4 10 10 H 1.48497 * 109.47197 * 204.83800 * 8 6 4 11 11 H 1.48498 * 109.47012 * 324.83985 * 8 6 4 12 12 C 1.50710 * 109.47181 * 119.99945 * 2 1 3 13 13 C 1.38772 * 119.77067 * 59.99721 * 12 2 1 14 14 C 1.36600 * 120.66498 * 179.97438 * 13 12 2 15 15 C 1.39739 * 119.88628 * 0.30295 * 14 13 12 16 16 N 1.35788 * 133.59465 * 180.37682 * 15 14 13 17 17 C 1.30114 * 109.64210 * 179.55742 * 16 15 14 18 18 N 1.36035 * 110.09841 * 359.75601 * 17 16 15 19 19 C 1.46497 * 126.35118 * 179.97438 * 18 17 16 20 20 C 1.38053 * 107.30607 * 0.02562 * 18 17 16 21 21 C 1.37857 * 119.77156 * 240.01999 * 12 2 1 22 22 H 1.09001 * 109.47368 * 174.98434 * 1 2 3 23 23 H 1.09008 * 109.46966 * 294.97981 * 1 2 3 24 24 H 1.08998 * 109.46966 * 54.97941 * 1 2 3 25 25 H 0.97004 * 119.99698 * 180.02562 * 7 6 4 26 26 H 1.08005 * 119.67009 * 0.02562 * 13 12 2 27 27 H 1.08002 * 120.05763 * 180.02562 * 14 13 12 28 28 H 1.08002 * 124.95247 * 179.73445 * 17 16 15 29 29 H 1.08998 * 109.47697 * 270.04591 * 19 18 17 30 30 H 1.09004 * 109.46963 * 30.04448 * 19 18 17 31 31 H 1.09000 * 109.47445 * 150.04096 * 19 18 17 32 32 H 1.07998 * 120.15276 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1351 -1.7855 -1.2290 6 6 2.3606 0.0121 -2.3579 7 7 2.7063 -0.6132 -3.4620 8 14 2.3145 1.8791 -2.3171 9 1 3.6002 2.3944 -1.7816 10 1 2.1070 2.3992 -3.6924 11 1 1.1996 2.3277 -1.4448 12 6 2.0324 -0.7104 1.2305 13 6 1.6942 -2.0390 1.4455 14 6 2.1398 -2.7008 2.5542 15 6 2.9394 -2.0358 3.4876 16 7 3.5271 -2.4105 4.6529 17 6 4.1873 -1.4067 5.1524 18 7 4.0732 -0.3215 4.3400 19 6 4.6737 0.9962 4.5618 20 6 3.2857 -0.6918 3.2683 21 6 2.8243 -0.0358 2.1351 22 1 -0.3634 -1.0237 -0.0898 23 1 -0.3633 0.4340 0.9316 24 1 -0.3633 0.5897 -0.8416 25 1 2.9377 -0.1049 -4.2551 26 1 1.0730 -2.5553 0.7284 27 1 1.8710 -3.7349 2.7115 28 1 4.7444 -1.4312 6.0773 29 1 3.9835 1.6189 5.1309 30 1 5.6039 0.8825 5.1184 31 1 4.8805 1.4676 3.6010 32 1 3.0845 0.9981 1.9629 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254418.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:20 Heat of formation + Delta-G solvation = 46.586767 kcal Electronic energy + Delta-G solvation = -15462.462536 eV Core-core repulsion = 13001.651919 eV Total energy + Delta-G solvation = -2460.810617 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.94438 -39.02894 -35.75043 -34.90229 -33.35373 -31.37330 -29.29305 -27.73679 -27.17269 -24.21813 -23.66905 -21.73292 -21.02282 -19.03356 -17.98253 -17.55717 -16.74642 -16.62155 -16.05285 -15.09171 -14.92978 -14.72829 -14.42754 -14.11834 -13.90309 -13.58462 -13.40372 -13.21074 -12.86106 -12.52953 -12.41775 -11.99124 -11.76102 -11.49534 -11.22931 -11.07216 -10.85060 -10.67970 -9.14637 -8.84239 -8.25493 -6.28853 0.15166 0.66371 1.36141 1.38050 1.48875 1.82835 1.95994 2.37288 2.97877 3.13890 3.44889 3.75030 3.96615 4.14555 4.27436 4.43221 4.47430 4.56150 4.64277 4.73583 4.78811 4.80403 5.00073 5.04376 5.25007 5.33543 5.46883 5.55502 5.65139 5.71803 5.94287 6.03669 6.36283 6.38297 6.77222 6.98183 7.35013 8.91206 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032685 B = 0.007690 C = 0.006938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.446394 B = 3640.377481 C = 4034.737822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.043 3.957 3 H 0.042 0.958 4 C -0.505 4.505 5 H 0.036 0.964 6 C 0.010 3.990 7 N -0.950 5.950 8 Si 0.938 3.062 9 H -0.267 1.267 10 H -0.289 1.289 11 H -0.239 1.239 12 C -0.032 4.032 13 C -0.120 4.120 14 C -0.080 4.080 15 C 0.004 3.996 16 N -0.538 5.538 17 C 0.262 3.738 18 N -0.499 5.499 19 C 0.073 3.927 20 C 0.039 3.961 21 C -0.133 4.133 22 H 0.047 0.953 23 H 0.051 0.949 24 H 0.042 0.958 25 H 0.265 0.735 26 H 0.121 0.879 27 H 0.133 0.867 28 H 0.262 0.738 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.738 5.959 17.799 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.024 3.976 3 H 0.060 0.940 4 C -0.543 4.543 5 H 0.055 0.945 6 C -0.186 4.186 7 N -0.591 5.591 8 Si 0.762 3.238 9 H -0.192 1.192 10 H -0.215 1.215 11 H -0.163 1.163 12 C -0.034 4.034 13 C -0.140 4.140 14 C -0.099 4.099 15 C -0.113 4.113 16 N -0.258 5.258 17 C -0.023 4.023 18 N -0.190 5.190 19 C -0.067 4.067 20 C -0.070 4.070 21 C -0.154 4.154 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.139 0.861 27 H 0.151 0.849 28 H 0.278 0.722 29 H 0.107 0.893 30 H 0.140 0.860 31 H 0.096 0.904 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.781 5.318 17.988 18.963 hybrid contribution 0.210 1.132 -1.127 1.611 sum 2.991 6.450 16.861 18.298 Atomic orbital electron populations 1.21886 0.96133 1.00982 0.99752 1.18244 0.94082 0.95147 0.90142 0.94025 1.21184 1.42817 0.94080 0.96174 0.94542 1.25927 0.94411 1.03587 0.94711 1.70059 1.48423 1.37930 1.02656 0.85871 0.80173 0.80159 0.77625 1.19217 1.21545 1.16257 1.20039 0.94862 0.94319 0.94204 1.20561 1.01761 0.94604 0.97058 1.20090 0.97258 0.99918 0.92649 1.19210 1.03618 0.92564 0.95900 1.70329 1.15528 1.30095 1.09890 1.26208 0.98090 0.80231 0.97791 1.45511 1.41664 1.13858 1.17918 1.22286 1.00326 0.79902 1.04185 1.18949 0.99335 0.96177 0.92580 1.19876 1.02241 1.00256 0.93031 0.93408 0.92984 0.93893 0.92620 0.86111 0.84898 0.72238 0.89321 0.86017 0.90420 0.85478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.28 8.91 71.98 0.64 -4.64 16 2 C 0.04 1.96 2.13 -12.28 -0.03 1.93 16 3 H 0.04 1.85 5.01 -2.39 -0.01 1.84 16 4 C -0.50 -28.38 8.63 25.60 0.22 -28.16 16 5 H 0.04 2.29 7.62 -2.91 -0.02 2.27 16 6 C 0.01 0.59 5.47 84.65 0.46 1.05 16 7 N -0.95 -59.22 13.96 21.45 0.30 -58.92 16 8 Si 0.94 43.02 26.99 68.60 1.85 44.87 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.24 -9.95 6.82 99.48 0.68 -9.28 16 12 C -0.03 -1.37 4.78 -19.82 -0.09 -1.47 16 13 C -0.12 -4.93 8.56 22.01 0.19 -4.74 16 14 C -0.08 -3.05 10.05 22.25 0.22 -2.83 16 15 C 0.00 0.15 7.23 39.45 0.29 0.43 16 16 N -0.54 -17.86 11.27 -192.03 -2.16 -20.03 16 17 C 0.26 6.07 12.50 180.06 2.25 8.32 16 18 N -0.50 -12.36 3.21 -543.65 -1.74 -14.11 16 19 C 0.07 1.01 11.18 127.77 1.43 2.44 16 20 C 0.04 1.35 6.87 38.86 0.27 1.62 16 21 C -0.13 -5.00 9.67 22.32 0.22 -4.79 16 22 H 0.05 1.93 7.54 -2.39 -0.02 1.91 16 23 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 24 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 26 H 0.12 5.01 7.51 -2.91 -0.02 4.99 16 27 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 28 H 0.26 2.67 8.06 -2.91 -0.02 2.65 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.13 4.26 7.93 -2.91 -0.02 4.23 16 Total: -1.00 -73.71 273.19 5.39 -68.32 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 1.08 Total: 10.68 kcal Atomic # 6 Polarization: -36.89 SS G_CDS: 6.06 Total: -30.82 kcal Atomic # 7 Polarization: -89.45 SS G_CDS: -3.61 Total: -93.06 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.85 Total: 44.87 kcal Total: -73.71 5.39 -68.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254418.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.911 kcal (2) G-P(sol) polarization free energy of solvation -73.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds