Wall clock time and date at job start Mon Mar 30 2020 03:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31519 * 119.99615 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47366 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47271 * 119.99753 * 8 6 4 11 11 H 1.48496 * 109.47166 * 239.99582 * 8 6 4 12 12 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 13 13 C 1.38783 * 119.77069 * 300.00081 * 12 2 1 14 14 C 1.36608 * 120.66178 * 179.97438 * 13 12 2 15 15 C 1.39734 * 119.88804 * 359.97438 * 14 13 12 16 16 N 1.35787 * 133.59506 * 179.97438 * 15 14 13 17 17 C 1.30114 * 109.64361 * 180.02562 * 16 15 14 18 18 N 1.36040 * 110.09400 * 0.02562 * 17 16 15 19 19 C 1.46500 * 126.34540 * 180.02562 * 18 17 16 20 20 C 1.38046 * 107.30910 * 359.97438 * 18 17 16 21 21 C 1.37853 * 119.77704 * 119.72376 * 12 2 1 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 0.96997 * 119.99545 * 180.02562 * 7 6 4 26 26 H 1.07999 * 119.66792 * 359.97438 * 13 12 2 27 27 H 1.08005 * 120.04997 * 180.02562 * 14 13 12 28 28 H 1.07994 * 124.95513 * 180.02562 * 17 16 15 29 29 H 1.09001 * 109.46932 * 270.00212 * 19 18 17 30 30 H 1.09006 * 109.47378 * 29.99565 * 19 18 17 31 31 H 1.08993 * 109.47377 * 149.99689 * 19 18 17 32 32 H 1.08002 * 120.15303 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.1455 -2.2877 3.6037 10 1 3.1467 -0.1875 4.8165 11 1 1.1661 -1.5867 4.8160 12 6 2.0323 -0.7104 -1.2305 13 6 1.6941 -2.0391 -1.4454 14 6 2.1389 -2.7005 -2.5548 15 6 2.9423 -2.0368 -3.4858 16 7 3.5254 -2.4098 -4.6539 17 6 4.1855 -1.4060 -5.1535 18 7 4.0719 -0.3210 -4.3406 19 6 4.6725 0.9967 -4.5624 20 6 3.2849 -0.6915 -3.2687 21 6 2.8198 -0.0343 -2.1377 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 0.7095 1.1617 3.4844 26 1 1.0730 -2.5553 -0.7284 27 1 1.8694 -3.7344 -2.7125 28 1 4.7424 -1.4304 -6.0784 29 1 5.6612 1.0271 -4.1045 30 1 4.7624 1.1795 -5.6333 31 1 4.0409 1.7639 -4.1147 32 1 3.0767 1.0008 -1.9677 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261254419.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:21 Heat of formation + Delta-G solvation = 64.875505 kcal Electronic energy + Delta-G solvation = -15402.196479 eV Core-core repulsion = 12942.178921 eV Total energy + Delta-G solvation = -2460.017558 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.64489 -37.41014 -34.22971 -33.48445 -30.90776 -29.93020 -27.49095 -26.73660 -25.12656 -22.69988 -22.16670 -20.35127 -19.59696 -16.80348 -16.60510 -15.70379 -15.48497 -15.19309 -14.40236 -13.72390 -13.40970 -13.13781 -13.07719 -12.68041 -12.50687 -11.75382 -11.56758 -11.17744 -11.01100 -10.91343 -10.55331 -10.21405 -10.11750 -9.92293 -9.68390 -9.40454 -8.95542 -8.38749 -7.72246 -7.34772 -6.02327 -4.08932 1.57635 2.16753 2.92191 3.25358 3.28895 3.37278 3.42625 4.39921 4.56936 4.64121 4.75680 4.94772 5.14500 5.28897 5.36719 5.58932 5.80552 6.01055 6.03635 6.15045 6.45456 6.70712 6.85332 6.93238 7.01270 7.19053 7.19875 7.34310 7.49691 7.58486 7.72474 7.95319 8.08346 8.26093 8.38274 8.94240 9.55931 11.03330 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037602 B = 0.006615 C = 0.006408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.472381 B = 4231.767738 C = 4368.781326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.072 3.928 3 H 0.034 0.966 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.892 3.108 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.005 4.005 13 C -0.109 4.109 14 C -0.075 4.075 15 C 0.018 3.982 16 N -0.497 5.497 17 C 0.232 3.768 18 N -0.502 5.502 19 C 0.084 3.916 20 C 0.054 3.946 21 C -0.137 4.137 22 H 0.030 0.970 23 H 0.086 0.914 24 H 0.009 0.991 25 H 0.260 0.740 26 H 0.131 0.869 27 H 0.119 0.881 28 H 0.205 0.795 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.940 0.221 -12.094 13.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.054 3.946 3 H 0.052 0.948 4 C -0.544 4.544 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.720 3.280 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.007 4.007 13 C -0.129 4.129 14 C -0.095 4.095 15 C -0.099 4.099 16 N -0.216 5.216 17 C -0.053 4.053 18 N -0.195 5.195 19 C -0.059 4.059 20 C -0.053 4.053 21 C -0.158 4.158 22 H 0.049 0.951 23 H 0.104 0.896 24 H 0.028 0.972 25 H 0.070 0.930 26 H 0.148 0.852 27 H 0.137 0.863 28 H 0.221 0.779 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.841 -0.356 -12.320 13.241 hybrid contribution 0.585 0.494 1.093 1.334 sum 5.426 0.138 -11.227 12.470 Atomic orbital electron populations 1.21784 0.97411 0.99497 1.00301 1.17905 0.92973 0.95391 0.88352 0.94752 1.21149 1.31102 1.12440 0.89742 0.92241 1.24954 0.95036 0.94999 0.98957 1.69897 1.36784 1.22917 1.23333 0.86523 0.78685 0.79777 0.83002 1.19686 1.21067 1.20963 1.20477 0.91858 0.93566 0.94768 1.20696 1.00821 0.94821 0.96558 1.19970 0.97279 0.99271 0.92980 1.18904 1.03828 0.91917 0.95214 1.70302 1.13452 1.28115 1.09767 1.25040 1.00827 0.81865 0.97575 1.45149 1.42908 1.11939 1.19476 1.21866 0.98967 0.82331 1.02744 1.18947 0.98351 0.96316 0.91720 1.19869 1.03196 0.99754 0.92973 0.95053 0.89573 0.97220 0.93000 0.85161 0.86285 0.77889 0.91174 0.89942 0.89927 0.86778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.78 37.16 0.33 -2.81 16 2 C 0.07 1.78 2.47 -92.92 -0.23 1.55 16 3 H 0.03 0.90 7.86 -51.93 -0.41 0.49 16 4 C -0.51 -13.60 8.23 -34.44 -0.28 -13.88 16 5 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 8 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.00 -0.11 4.74 -104.56 -0.50 -0.60 16 13 C -0.11 -2.23 8.62 -39.97 -0.34 -2.57 16 14 C -0.08 -1.45 10.05 -39.61 -0.40 -1.84 16 15 C 0.02 0.35 7.23 -84.70 -0.61 -0.26 16 16 N -0.50 -8.93 11.27 -12.05 -0.14 -9.07 16 17 C 0.23 3.24 12.50 -89.78 -1.12 2.12 16 18 N -0.50 -7.31 3.21 -123.19 -0.39 -7.71 16 19 C 0.08 0.79 11.18 59.85 0.67 1.46 16 20 C 0.05 1.01 6.87 -83.99 -0.58 0.43 16 21 C -0.14 -2.72 9.66 -39.50 -0.38 -3.11 16 22 H 0.03 0.70 7.37 -51.93 -0.38 0.32 16 23 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 24 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.13 2.61 7.54 -52.49 -0.40 2.21 16 27 H 0.12 2.02 8.06 -52.48 -0.42 1.59 16 28 H 0.20 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.11 2.11 7.93 -52.49 -0.42 1.70 16 LS Contribution 273.66 15.07 4.12 4.12 Total: -1.00 -31.24 273.66 -8.33 -39.57 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -3.99 Total: -0.75 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -3.54 Total: -17.94 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.10 Total: -41.04 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.24 -8.33 -39.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254419.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.444 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds