Wall clock time and date at job start Mon Mar 30 2020 03:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31519 * 119.99615 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47366 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47271 * 119.99753 * 8 6 4 11 11 H 1.48496 * 109.47166 * 239.99582 * 8 6 4 12 12 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 13 13 C 1.38783 * 119.77069 * 300.00081 * 12 2 1 14 14 C 1.36608 * 120.66178 * 179.97438 * 13 12 2 15 15 C 1.39734 * 119.88804 * 359.97438 * 14 13 12 16 16 N 1.35787 * 133.59506 * 179.97438 * 15 14 13 17 17 C 1.30114 * 109.64361 * 180.02562 * 16 15 14 18 18 N 1.36040 * 110.09400 * 0.02562 * 17 16 15 19 19 C 1.46500 * 126.34540 * 180.02562 * 18 17 16 20 20 C 1.38046 * 107.30910 * 359.97438 * 18 17 16 21 21 C 1.37853 * 119.77704 * 119.72376 * 12 2 1 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 0.96997 * 119.99545 * 180.02562 * 7 6 4 26 26 H 1.07999 * 119.66792 * 359.97438 * 13 12 2 27 27 H 1.08005 * 120.04997 * 180.02562 * 14 13 12 28 28 H 1.07994 * 124.95513 * 180.02562 * 17 16 15 29 29 H 1.09001 * 109.46932 * 270.00212 * 19 18 17 30 30 H 1.09006 * 109.47378 * 29.99565 * 19 18 17 31 31 H 1.08993 * 109.47377 * 149.99689 * 19 18 17 32 32 H 1.08002 * 120.15303 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.1455 -2.2877 3.6037 10 1 3.1467 -0.1875 4.8165 11 1 1.1661 -1.5867 4.8160 12 6 2.0323 -0.7104 -1.2305 13 6 1.6941 -2.0391 -1.4454 14 6 2.1389 -2.7005 -2.5548 15 6 2.9423 -2.0368 -3.4858 16 7 3.5254 -2.4098 -4.6539 17 6 4.1855 -1.4060 -5.1535 18 7 4.0719 -0.3210 -4.3406 19 6 4.6725 0.9967 -4.5624 20 6 3.2849 -0.6915 -3.2687 21 6 2.8198 -0.0343 -2.1377 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 0.7095 1.1617 3.4844 26 1 1.0730 -2.5553 -0.7284 27 1 1.8694 -3.7344 -2.7125 28 1 4.7424 -1.4304 -6.0784 29 1 5.6612 1.0271 -4.1045 30 1 4.7624 1.1795 -5.6333 31 1 4.0409 1.7639 -4.1147 32 1 3.0767 1.0008 -1.9677 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254419.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:21 Heat of formation + Delta-G solvation = 48.084549 kcal Electronic energy + Delta-G solvation = -15402.924589 eV Core-core repulsion = 12942.178921 eV Total energy + Delta-G solvation = -2460.745668 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.93328 -38.96461 -35.83363 -34.93925 -32.77229 -31.34043 -29.05958 -27.72996 -27.18674 -24.21691 -23.68315 -21.76331 -21.12845 -18.46726 -17.96496 -17.37644 -16.85335 -16.61313 -16.11187 -15.10732 -14.88382 -14.59234 -14.46720 -14.05218 -13.53188 -13.44352 -13.27619 -13.01377 -12.83607 -12.48969 -12.31186 -12.09447 -11.90879 -11.41696 -11.22283 -10.94093 -10.84458 -10.45673 -9.13380 -8.83440 -8.08362 -6.22099 0.17059 0.67947 1.41271 1.43991 1.55263 1.83719 1.96951 2.44827 3.02874 3.19640 3.46285 3.77606 3.97932 4.18348 4.32988 4.46864 4.54864 4.63859 4.70039 4.74206 4.87383 4.94174 5.15742 5.25171 5.35550 5.52047 5.55512 5.61961 5.71876 6.00995 6.08831 6.13051 6.37304 6.38818 6.86220 6.98708 7.45682 8.96024 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037602 B = 0.006615 C = 0.006408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.472381 B = 4231.767738 C = 4368.781326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.075 3.925 3 H 0.008 0.992 4 C -0.520 4.520 5 H 0.051 0.949 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.953 3.047 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.278 1.278 12 C -0.034 4.034 13 C -0.119 4.119 14 C -0.079 4.079 15 C 0.003 3.997 16 N -0.537 5.537 17 C 0.261 3.739 18 N -0.499 5.499 19 C 0.074 3.926 20 C 0.039 3.961 21 C -0.135 4.135 22 H 0.034 0.966 23 H 0.061 0.939 24 H 0.024 0.976 25 H 0.262 0.738 26 H 0.125 0.875 27 H 0.136 0.864 28 H 0.263 0.737 29 H 0.083 0.917 30 H 0.125 0.875 31 H 0.078 0.922 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.509 0.031 -14.025 15.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.057 3.943 3 H 0.026 0.974 4 C -0.558 4.558 5 H 0.069 0.931 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.779 3.221 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.204 1.204 12 C -0.036 4.036 13 C -0.139 4.139 14 C -0.098 4.098 15 C -0.113 4.113 16 N -0.257 5.257 17 C -0.024 4.024 18 N -0.190 5.190 19 C -0.066 4.066 20 C -0.070 4.070 21 C -0.156 4.156 22 H 0.053 0.947 23 H 0.080 0.920 24 H 0.043 0.957 25 H 0.071 0.929 26 H 0.143 0.857 27 H 0.154 0.846 28 H 0.278 0.722 29 H 0.101 0.899 30 H 0.143 0.857 31 H 0.096 0.904 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.423 -0.519 -14.263 15.651 hybrid contribution 0.204 0.600 1.498 1.626 sum 6.627 0.081 -12.765 14.383 Atomic orbital electron populations 1.21627 0.97142 0.99485 0.99720 1.17725 0.93271 0.93965 0.89338 0.97411 1.21393 1.31009 1.12301 0.91060 0.93100 1.25674 0.95257 0.95692 1.01638 1.70012 1.37619 1.23997 1.23973 0.85580 0.78240 0.78692 0.79620 1.19516 1.20630 1.20358 1.20211 0.94301 0.94354 0.94754 1.20600 1.01550 0.94455 0.97265 1.20112 0.97118 1.00033 0.92558 1.19220 1.03733 0.92464 0.95919 1.70328 1.15561 1.30106 1.09692 1.26212 0.98011 0.80281 0.97865 1.45510 1.41724 1.13870 1.17920 1.22272 0.98963 0.79667 1.05741 1.18938 0.99353 0.96192 0.92541 1.19860 1.02548 0.99932 0.93216 0.94691 0.92032 0.95700 0.92879 0.85716 0.84599 0.72187 0.89885 0.85700 0.90353 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.97 8.78 71.98 0.63 -5.34 16 2 C 0.08 3.85 2.47 -12.29 -0.03 3.82 16 3 H 0.01 0.43 7.86 -2.39 -0.02 0.41 16 4 C -0.52 -28.70 8.23 25.60 0.21 -28.49 16 5 H 0.05 2.83 7.60 -2.91 -0.02 2.81 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.92 -52.37 11.32 21.45 0.24 -52.13 16 8 Si 0.95 43.69 29.54 68.60 2.03 45.72 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 12 C -0.03 -1.54 4.74 -19.83 -0.09 -1.64 16 13 C -0.12 -4.96 8.62 22.02 0.19 -4.77 16 14 C -0.08 -3.02 10.05 22.25 0.22 -2.80 16 15 C 0.00 0.13 7.23 39.45 0.29 0.41 16 16 N -0.54 -17.92 11.27 -192.03 -2.17 -20.08 16 17 C 0.26 6.17 12.50 180.05 2.25 8.42 16 18 N -0.50 -12.87 3.21 -543.65 -1.74 -14.61 16 19 C 0.07 1.11 11.18 127.77 1.43 2.54 16 20 C 0.04 1.40 6.87 38.86 0.27 1.67 16 21 C -0.13 -5.39 9.66 22.32 0.22 -5.17 16 22 H 0.03 1.62 7.37 -2.39 -0.02 1.60 16 23 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 24 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 26 H 0.12 5.19 7.54 -2.91 -0.02 5.17 16 27 H 0.14 4.57 8.06 -2.91 -0.02 4.54 16 28 H 0.26 2.76 8.06 -2.91 -0.02 2.73 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.12 4.48 7.93 -2.91 -0.02 4.45 16 Total: -1.00 -69.08 273.66 5.50 -63.58 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.11 Total: 7.52 kcal Atomic # 6 Polarization: -36.03 SS G_CDS: 6.03 Total: -30.00 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -3.66 Total: -86.82 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -69.08 5.50 -63.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254419.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.669 kcal (2) G-P(sol) polarization free energy of solvation -69.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds