Wall clock time and date at job start Mon Mar 30 2020 03:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36839 * 125.06124 * 2 1 4 4 C 1.34242 * 109.92638 * 180.02562 * 3 2 1 5 5 C 1.46481 * 107.00050 * 359.97438 * 4 3 2 6 6 C 1.39633 * 134.02987 * 179.97438 * 5 4 3 7 7 C 1.36624 * 119.76444 * 180.02562 * 6 5 4 8 8 C 1.38833 * 120.52570 * 359.74976 * 7 6 5 9 9 C 1.37749 * 120.66901 * 0.50858 * 8 7 6 10 10 C 1.50697 * 120.10921 * 179.76571 * 9 8 7 11 11 H 1.09004 * 109.47083 * 221.47532 * 10 9 8 12 12 N 1.46898 * 109.47728 * 341.48047 * 10 9 8 13 13 C 1.50710 * 109.47095 * 101.48347 * 10 9 8 14 14 H 1.08000 * 119.99127 * 359.97438 * 13 10 9 15 15 C 1.37872 * 120.00105 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00059 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 119.99988 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.46940 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47182 * 120.00262 * 17 15 13 20 20 H 1.48503 * 109.47235 * 240.00383 * 17 15 13 21 21 C 1.37686 * 125.06494 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.46989 * 263.33421 * 1 2 3 23 23 H 1.08996 * 109.47294 * 23.33514 * 1 2 3 24 24 H 1.09004 * 109.47212 * 143.33521 * 1 2 3 25 25 H 1.07997 * 125.03600 * 359.97337 * 3 2 1 26 26 H 1.07996 * 126.49433 * 180.02562 * 4 3 2 27 27 H 1.07996 * 120.11572 * 0.02620 * 6 5 4 28 28 H 1.07997 * 119.73429 * 179.97438 * 7 6 5 29 29 H 1.08005 * 119.66374 * 180.25725 * 8 7 6 30 30 H 1.00897 * 110.99773 * 296.04931 * 12 10 9 31 31 H 1.00907 * 110.99460 * 59.99802 * 12 10 9 32 32 H 0.97001 * 120.00020 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1201 0.0000 4 6 3.5469 0.7696 -0.0006 5 6 3.5946 -0.6945 -0.0003 6 6 4.6296 -1.6317 -0.0011 7 6 4.3362 -2.9661 -0.0011 8 6 3.0168 -3.3980 0.0049 9 6 1.9804 -2.4906 0.0004 10 6 0.5529 -2.9735 0.0017 11 1 -0.0376 -2.3634 -0.6819 12 7 0.5099 -4.3762 -0.4322 13 6 -0.0144 -2.8605 1.3934 14 1 0.5979 -2.4778 2.1965 15 6 -1.3148 -3.2457 1.6411 16 7 -2.0601 -3.7123 0.6631 17 14 -2.0177 -3.1064 3.3661 18 1 -0.9834 -2.5568 4.2791 19 1 -3.1944 -2.2007 3.3496 20 1 -2.4342 -4.4504 3.8411 21 6 2.2560 -1.1270 0.0005 22 1 -0.3633 -0.1193 1.0207 23 1 -0.3634 0.9436 -0.4070 24 1 -0.3634 -0.8244 -0.6137 25 1 1.8834 2.1355 -0.0004 26 1 4.3936 1.4400 -0.0003 27 1 5.6583 -1.3030 -0.0017 28 1 5.1371 -3.6906 -0.0021 29 1 2.8008 -4.4563 0.0090 30 1 0.8250 -4.4694 -1.3862 31 1 1.0503 -4.9627 0.1860 32 1 -2.9749 -3.9836 0.8375 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261262624.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:08 Heat of formation + Delta-G solvation = 70.278484 kcal Electronic energy + Delta-G solvation = -15977.025721 eV Core-core repulsion = 13517.242453 eV Total energy + Delta-G solvation = -2459.783267 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.70667 -36.79796 -34.73390 -32.01199 -31.15565 -29.22377 -28.07316 -26.33531 -25.18208 -22.76516 -21.27390 -20.37255 -18.99539 -16.53619 -16.23960 -15.72406 -14.89464 -14.58622 -14.50500 -14.17074 -13.31834 -13.09269 -12.68664 -12.35815 -12.14135 -12.09882 -11.93654 -11.37027 -11.01165 -10.96712 -10.62713 -10.43103 -10.33775 -9.70466 -9.33829 -8.67402 -8.48960 -7.54300 -7.13175 -6.82593 -5.93413 -4.08516 1.83591 2.32601 3.26370 3.27650 3.36441 3.41174 3.52507 4.40485 4.63907 5.22467 5.28819 5.34643 5.48875 5.65777 5.75279 5.97330 5.98049 6.19287 6.26097 6.26703 6.40595 6.46913 6.58479 6.78045 7.05540 7.24236 7.38151 7.46558 7.52107 7.85718 7.90240 7.96676 8.14700 8.60918 8.98258 9.10577 9.59919 11.09504 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026831 B = 0.010123 C = 0.008524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.305008 B = 2765.318930 C = 3284.069025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.471 5.471 3 C 0.044 3.956 4 C -0.224 4.224 5 C -0.116 4.116 6 C -0.106 4.106 7 C -0.139 4.139 8 C -0.134 4.134 9 C -0.074 4.074 10 C 0.252 3.748 11 H 0.048 0.952 12 N -0.811 5.811 13 C -0.524 4.524 14 H 0.051 0.949 15 C 0.085 3.915 16 N -0.845 5.845 17 Si 0.879 3.121 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.283 1.283 21 C 0.107 3.893 22 H 0.079 0.921 23 H 0.064 0.936 24 H 0.097 0.903 25 H 0.159 0.841 26 H 0.136 0.864 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.299 0.701 31 H 0.320 0.680 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.286 6.320 -2.340 9.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.151 5.151 3 C -0.083 4.083 4 C -0.250 4.250 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.158 4.158 8 C -0.154 4.154 9 C -0.079 4.079 10 C 0.142 3.858 11 H 0.065 0.935 12 N -0.337 5.337 13 C -0.563 4.563 14 H 0.070 0.930 15 C -0.122 4.122 16 N -0.480 5.480 17 Si 0.706 3.294 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.209 1.209 21 C 0.000 4.000 22 H 0.098 0.902 23 H 0.083 0.917 24 H 0.115 0.885 25 H 0.177 0.823 26 H 0.154 0.846 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.134 0.866 30 H 0.109 0.891 31 H 0.133 0.867 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.897 6.301 -2.270 8.923 hybrid contribution 0.609 0.188 0.990 1.177 sum 6.505 6.488 -1.280 9.277 Atomic orbital electron populations 1.22232 0.76364 1.02882 1.04920 1.43847 1.06337 1.03997 1.60940 1.21699 0.90693 0.91063 1.04887 1.21474 0.95531 0.92968 1.14998 1.19196 0.92540 0.93230 1.07054 1.19967 0.96947 0.92174 1.03368 1.20479 0.96184 0.95121 1.04057 1.20587 0.91696 0.98876 1.04227 1.20843 1.00471 0.89372 0.97173 1.18304 0.84237 0.86329 0.96930 0.93462 1.59165 1.61943 1.09417 1.03205 1.20817 0.96891 1.45367 0.93212 0.93029 1.24928 0.96930 0.94346 0.96002 1.70107 1.07479 1.39816 1.30622 0.86773 0.79020 0.77825 0.85750 1.19914 1.21095 1.20932 1.18112 0.89205 0.88235 1.04442 0.90211 0.91744 0.88492 0.82327 0.84577 0.87352 0.87252 0.86578 0.89068 0.86709 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.38 9.72 59.84 0.58 1.96 16 2 N -0.47 -8.95 3.18 -121.80 -0.39 -9.34 16 3 C 0.04 0.70 11.27 -16.73 -0.19 0.52 16 4 C -0.22 -3.72 11.08 -37.67 -0.42 -4.14 16 5 C -0.12 -2.25 6.37 -105.14 -0.67 -2.92 16 6 C -0.11 -1.89 10.05 -39.64 -0.40 -2.29 16 7 C -0.14 -2.48 9.97 -39.94 -0.40 -2.87 16 8 C -0.13 -2.66 9.22 -39.54 -0.36 -3.02 16 9 C -0.07 -1.64 5.04 -104.47 -0.53 -2.16 16 10 C 0.25 6.05 2.18 -70.01 -0.15 5.90 16 11 H 0.05 1.22 5.40 -51.93 -0.28 0.94 16 12 N -0.81 -18.74 7.98 -6.65 -0.05 -18.79 16 13 C -0.52 -13.82 7.61 -34.44 -0.26 -14.08 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 15 C 0.08 2.26 5.39 -17.82 -0.10 2.17 16 16 N -0.85 -23.52 12.77 55.43 0.71 -22.82 16 17 Si 0.88 20.81 29.54 -169.99 -5.02 15.79 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.11 2.27 6.72 -83.99 -0.56 1.71 16 22 H 0.08 1.53 7.81 -51.93 -0.41 1.13 16 23 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 24 H 0.10 1.95 5.24 -51.93 -0.27 1.68 16 25 H 0.16 1.89 8.06 -52.49 -0.42 1.46 16 26 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 27 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.12 2.16 6.22 -52.48 -0.33 1.83 16 30 H 0.30 6.24 9.04 -39.29 -0.36 5.88 16 31 H 0.32 7.12 7.32 -39.29 -0.29 6.83 16 32 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 266.83 15.07 4.02 4.02 Total: -1.00 -29.81 266.83 -7.77 -37.58 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -3.58 Total: 12.80 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -3.46 Total: -19.25 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.27 Total: -50.95 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.81 -7.77 -37.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261262624.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.860 kcal (2) G-P(sol) polarization free energy of solvation -29.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds