Wall clock time and date at job start Mon Mar 30 2020 03:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36839 * 125.06124 * 2 1 4 4 C 1.34242 * 109.92638 * 180.02562 * 3 2 1 5 5 C 1.46481 * 107.00050 * 359.97438 * 4 3 2 6 6 C 1.39633 * 134.02987 * 179.97438 * 5 4 3 7 7 C 1.36624 * 119.76444 * 180.02562 * 6 5 4 8 8 C 1.38833 * 120.52570 * 359.74976 * 7 6 5 9 9 C 1.37749 * 120.66901 * 0.50858 * 8 7 6 10 10 C 1.50697 * 120.10921 * 179.76571 * 9 8 7 11 11 H 1.09004 * 109.47083 * 221.47532 * 10 9 8 12 12 N 1.46898 * 109.47728 * 341.48047 * 10 9 8 13 13 C 1.50710 * 109.47095 * 101.48347 * 10 9 8 14 14 H 1.08000 * 119.99127 * 359.97438 * 13 10 9 15 15 C 1.37872 * 120.00105 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00059 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 119.99988 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.46940 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47182 * 120.00262 * 17 15 13 20 20 H 1.48503 * 109.47235 * 240.00383 * 17 15 13 21 21 C 1.37686 * 125.06494 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.46989 * 263.33421 * 1 2 3 23 23 H 1.08996 * 109.47294 * 23.33514 * 1 2 3 24 24 H 1.09004 * 109.47212 * 143.33521 * 1 2 3 25 25 H 1.07997 * 125.03600 * 359.97337 * 3 2 1 26 26 H 1.07996 * 126.49433 * 180.02562 * 4 3 2 27 27 H 1.07996 * 120.11572 * 0.02620 * 6 5 4 28 28 H 1.07997 * 119.73429 * 179.97438 * 7 6 5 29 29 H 1.08005 * 119.66374 * 180.25725 * 8 7 6 30 30 H 1.00897 * 110.99773 * 296.04931 * 12 10 9 31 31 H 1.00907 * 110.99460 * 59.99802 * 12 10 9 32 32 H 0.97001 * 120.00020 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1201 0.0000 4 6 3.5469 0.7696 -0.0006 5 6 3.5946 -0.6945 -0.0003 6 6 4.6296 -1.6317 -0.0011 7 6 4.3362 -2.9661 -0.0011 8 6 3.0168 -3.3980 0.0049 9 6 1.9804 -2.4906 0.0004 10 6 0.5529 -2.9735 0.0017 11 1 -0.0376 -2.3634 -0.6819 12 7 0.5099 -4.3762 -0.4322 13 6 -0.0144 -2.8605 1.3934 14 1 0.5979 -2.4778 2.1965 15 6 -1.3148 -3.2457 1.6411 16 7 -2.0601 -3.7123 0.6631 17 14 -2.0177 -3.1064 3.3661 18 1 -0.9834 -2.5568 4.2791 19 1 -3.1944 -2.2007 3.3496 20 1 -2.4342 -4.4504 3.8411 21 6 2.2560 -1.1270 0.0005 22 1 -0.3633 -0.1193 1.0207 23 1 -0.3634 0.9436 -0.4070 24 1 -0.3634 -0.8244 -0.6137 25 1 1.8834 2.1355 -0.0004 26 1 4.3936 1.4400 -0.0003 27 1 5.6583 -1.3030 -0.0017 28 1 5.1371 -3.6906 -0.0021 29 1 2.8008 -4.4563 0.0090 30 1 0.8250 -4.4694 -1.3862 31 1 1.0503 -4.9627 0.1860 32 1 -2.9749 -3.9836 0.8375 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261262624.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:07 Heat of formation + Delta-G solvation = 51.728079 kcal Electronic energy + Delta-G solvation = -15977.830127 eV Core-core repulsion = 13517.242453 eV Total energy + Delta-G solvation = -2460.587673 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.10462 -38.30693 -36.43253 -33.86165 -32.73475 -30.74476 -29.52021 -28.16583 -26.75376 -24.45315 -22.71871 -21.89202 -20.44948 -18.55548 -17.66070 -17.14846 -16.62211 -16.22937 -16.06727 -15.89937 -14.88808 -14.65522 -14.23300 -13.93866 -13.62850 -13.60522 -13.46120 -12.90179 -12.82275 -12.72004 -12.32515 -12.01976 -11.94629 -11.40433 -11.24816 -10.57368 -10.19162 -8.97117 -8.94159 -8.30687 -7.96128 -6.19057 0.40279 0.86517 1.36194 1.41170 1.49977 1.95481 2.17465 2.43966 3.14044 3.23424 3.94780 4.06800 4.15149 4.24581 4.35976 4.38236 4.56288 4.71642 4.74846 4.90824 4.94895 5.05734 5.18198 5.31058 5.40169 5.72072 5.76069 5.87098 5.99125 6.10101 6.18463 6.50266 6.60236 6.66955 7.08499 7.24463 7.51949 9.03275 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026831 B = 0.010123 C = 0.008524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.305008 B = 2765.318930 C = 3284.069025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.484 5.484 3 C 0.047 3.953 4 C -0.227 4.227 5 C -0.136 4.136 6 C -0.103 4.103 7 C -0.143 4.143 8 C -0.142 4.142 9 C -0.107 4.107 10 C 0.261 3.739 11 H 0.023 0.977 12 N -0.820 5.820 13 C -0.523 4.523 14 H 0.029 0.971 15 C 0.045 3.955 16 N -0.874 5.874 17 Si 0.936 3.064 18 H -0.279 1.279 19 H -0.276 1.276 20 H -0.283 1.283 21 C 0.071 3.929 22 H 0.058 0.942 23 H 0.107 0.893 24 H 0.066 0.934 25 H 0.204 0.796 26 H 0.170 0.830 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.120 0.880 30 H 0.311 0.689 31 H 0.323 0.677 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.776 7.758 -2.066 11.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.165 5.165 3 C -0.079 4.079 4 C -0.252 4.252 5 C -0.141 4.141 6 C -0.121 4.121 7 C -0.162 4.162 8 C -0.161 4.161 9 C -0.112 4.112 10 C 0.151 3.849 11 H 0.041 0.959 12 N -0.348 5.348 13 C -0.562 4.562 14 H 0.048 0.952 15 C -0.159 4.159 16 N -0.509 5.509 17 Si 0.762 3.238 18 H -0.204 1.204 19 H -0.201 1.201 20 H -0.209 1.209 21 C -0.036 4.036 22 H 0.076 0.924 23 H 0.125 0.875 24 H 0.085 0.915 25 H 0.220 0.780 26 H 0.187 0.813 27 H 0.160 0.840 28 H 0.160 0.840 29 H 0.138 0.862 30 H 0.122 0.878 31 H 0.136 0.864 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.399 7.750 -1.996 10.899 hybrid contribution 0.235 -0.215 0.875 0.931 sum 7.634 7.535 -1.122 10.785 Atomic orbital electron populations 1.22090 0.76468 1.03942 1.03185 1.44060 1.06574 1.04457 1.61426 1.22473 0.90422 0.91977 1.02982 1.21907 0.96898 0.91892 1.14491 1.19739 0.92110 0.95202 1.07006 1.20421 0.98292 0.91942 1.01457 1.20821 0.95951 0.96154 1.03278 1.20795 0.92524 0.98855 1.03951 1.20705 0.99545 0.90675 1.00269 1.17951 0.85614 0.86278 0.95037 0.95921 1.59034 1.62419 1.09291 1.04035 1.20848 0.96831 1.44723 0.93804 0.95229 1.25494 0.97210 0.94229 0.98978 1.70205 1.07665 1.40934 1.32142 0.85883 0.78310 0.77689 0.81870 1.20407 1.20127 1.20916 1.18430 0.90868 0.88578 1.05711 0.92361 0.87453 0.91506 0.77970 0.81255 0.84002 0.83959 0.86189 0.87830 0.86377 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.04 9.72 127.77 1.24 4.28 16 2 N -0.48 -18.11 3.18 -539.28 -1.71 -19.83 16 3 C 0.05 1.39 11.27 83.00 0.94 2.32 16 4 C -0.23 -6.84 11.08 23.51 0.26 -6.58 16 5 C -0.14 -5.05 6.37 -20.20 -0.13 -5.18 16 6 C -0.10 -3.40 10.05 22.23 0.22 -3.18 16 7 C -0.14 -4.81 9.97 22.03 0.22 -4.59 16 8 C -0.14 -5.61 9.22 22.30 0.21 -5.41 16 9 C -0.11 -4.84 5.04 -19.77 -0.10 -4.94 16 10 C 0.26 13.02 2.18 43.43 0.09 13.12 16 11 H 0.02 1.26 5.40 -2.38 -0.01 1.25 16 12 N -0.82 -39.02 7.98 -174.94 -1.40 -40.42 16 13 C -0.52 -28.47 7.61 25.60 0.19 -28.28 16 14 H 0.03 1.70 7.74 -2.91 -0.02 1.68 16 15 C 0.04 2.45 5.39 84.65 0.46 2.90 16 16 N -0.87 -49.63 12.77 21.45 0.27 -49.35 16 17 Si 0.94 43.46 29.54 68.60 2.03 45.49 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 21 C 0.07 3.02 6.72 39.03 0.26 3.28 16 22 H 0.06 2.30 7.81 -2.39 -0.02 2.28 16 23 H 0.11 2.82 8.11 -2.39 -0.02 2.80 16 24 H 0.07 2.82 5.24 -2.39 -0.01 2.81 16 25 H 0.20 3.91 8.06 -2.91 -0.02 3.88 16 26 H 0.17 3.85 8.06 -2.91 -0.02 3.82 16 27 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 28 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 29 H 0.12 4.49 6.22 -2.91 -0.02 4.47 16 30 H 0.31 13.34 9.04 -89.70 -0.81 12.53 16 31 H 0.32 14.74 7.32 -89.69 -0.66 14.09 16 32 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -65.32 266.83 2.74 -62.58 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: -0.31 Total: 33.79 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: 3.87 Total: -32.26 kcal Atomic # 7 Polarization: -106.76 SS G_CDS: -2.84 Total: -109.60 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -65.32 2.74 -62.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261262624.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.307 kcal (2) G-P(sol) polarization free energy of solvation -65.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds