Wall clock time and date at job start Mon Mar 30 2020 03:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46988 * 2 1 4 4 C 1.50691 * 109.47277 * 239.99419 * 2 1 3 5 5 H 1.08004 * 119.99908 * 240.00336 * 4 2 1 6 6 C 1.37875 * 120.00052 * 60.00326 * 4 2 1 7 7 N 1.31512 * 120.00352 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00013 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47345 * 59.99834 * 8 6 4 10 10 H 1.48501 * 109.46980 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47335 * 299.99715 * 8 6 4 12 12 C 1.50701 * 109.46884 * 119.99487 * 2 1 3 13 13 C 1.38966 * 119.59158 * 59.99590 * 12 2 1 14 14 C 1.36470 * 120.62852 * 180.02562 * 13 12 2 15 15 C 1.39946 * 119.63729 * 359.97438 * 14 13 12 16 16 C 1.45924 * 134.03482 * 179.97438 * 15 14 13 17 17 N 1.30243 * 107.78857 * 180.02562 * 16 15 14 18 18 N 1.39876 * 110.08036 * 359.97438 * 17 16 15 19 19 C 1.46506 * 125.45792 * 179.97438 * 18 17 16 20 20 C 1.37034 * 109.07884 * 0.26637 * 18 17 16 21 21 C 1.36596 * 119.59403 * 240.02638 * 12 2 1 22 22 H 1.08997 * 109.46988 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47392 * 300.00981 * 1 2 3 24 24 H 1.09006 * 109.46645 * 60.00674 * 1 2 3 25 25 H 0.96993 * 120.00625 * 179.97438 * 7 6 4 26 26 H 1.07991 * 119.68674 * 0.02562 * 13 12 2 27 27 H 1.07998 * 120.17977 * 180.02562 * 14 13 12 28 28 H 1.07999 * 126.10978 * 0.06559 * 16 15 14 29 29 H 1.09001 * 109.47060 * 90.02922 * 19 18 17 30 30 H 1.09004 * 109.47073 * 210.02411 * 19 18 17 31 31 H 1.09000 * 109.47212 * 330.02494 * 19 18 17 32 32 H 1.08000 * 120.07190 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2395 -2.4826 7 7 0.9429 0.8294 -2.6035 8 14 2.3227 -1.1199 -4.0077 9 1 1.8283 -2.5201 -4.0079 10 1 1.8282 -0.4196 -5.2203 11 1 3.8077 -1.1193 -4.0075 12 6 2.0323 -0.7103 1.2306 13 6 1.6913 -2.0408 1.4422 14 6 2.1340 -2.7043 2.5495 15 6 2.9395 -2.0378 3.4798 16 6 3.5709 -2.4257 4.7369 17 7 4.2166 -1.3910 5.1937 18 7 4.0671 -0.3080 4.3212 19 6 4.6524 1.0219 4.5091 20 6 3.2801 -0.6883 3.2658 21 6 2.8166 -0.0383 2.1245 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7090 1.1610 -3.4845 26 1 1.0701 -2.5545 0.7236 27 1 1.8649 -3.7384 2.7065 28 1 3.5136 -3.3975 5.2046 29 1 5.6370 1.0547 4.0427 30 1 4.0075 1.7709 4.0495 31 1 4.7481 1.2295 5.5749 32 1 3.0743 0.9956 1.9481 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261262895.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:23 Heat of formation + Delta-G solvation = 78.608372 kcal Electronic energy + Delta-G solvation = -15373.280421 eV Core-core repulsion = 12913.858365 eV Total energy + Delta-G solvation = -2459.422056 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.77450 -37.32304 -33.96257 -33.06234 -31.05853 -29.82841 -27.86378 -26.22044 -25.14988 -22.58215 -21.97753 -20.50882 -19.45515 -16.71813 -16.37786 -15.65938 -15.16699 -14.85956 -14.31605 -14.05938 -13.43945 -12.96848 -12.79316 -12.44427 -12.40237 -11.86243 -11.55635 -11.21491 -10.92919 -10.69429 -10.63713 -10.43562 -10.27308 -10.09764 -9.60465 -9.50530 -9.02963 -8.40088 -7.75590 -7.38440 -6.03970 -4.10966 1.52760 2.14620 2.72367 2.92453 3.30325 3.34861 3.38179 4.36168 4.50549 4.73244 5.02450 5.15360 5.27264 5.32923 5.52395 5.54495 5.70860 5.87231 6.00782 6.20276 6.50568 6.55013 6.80923 6.86524 6.95799 7.15108 7.16988 7.31966 7.33790 7.60869 7.70260 7.92697 7.98355 8.06319 8.35311 8.91448 9.53815 11.01719 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037276 B = 0.006605 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.979327 B = 4237.952494 C = 4380.892710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.069 3.931 3 H 0.035 0.965 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.893 3.107 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.021 3.979 13 C -0.136 4.136 14 C -0.056 4.056 15 C -0.204 4.204 16 C 0.069 3.931 17 N -0.273 5.273 18 N -0.418 5.418 19 C 0.115 3.885 20 C 0.132 3.868 21 C -0.163 4.163 22 H 0.030 0.970 23 H 0.009 0.991 24 H 0.086 0.914 25 H 0.262 0.738 26 H 0.128 0.872 27 H 0.118 0.882 28 H 0.189 0.811 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.960 -2.678 10.577 11.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.051 3.949 3 H 0.053 0.947 4 C -0.547 4.547 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.721 3.279 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.018 3.982 13 C -0.156 4.156 14 C -0.077 4.077 15 C -0.211 4.211 16 C -0.128 4.128 17 N -0.086 5.086 18 N -0.208 5.208 19 C -0.027 4.027 20 C 0.018 3.982 21 C -0.185 4.185 22 H 0.050 0.950 23 H 0.028 0.972 24 H 0.105 0.895 25 H 0.072 0.928 26 H 0.146 0.854 27 H 0.136 0.864 28 H 0.206 0.794 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.706 -1.927 11.421 12.161 hybrid contribution -0.048 -0.647 -1.494 1.629 sum 3.659 -2.575 9.927 10.889 Atomic orbital electron populations 1.21783 0.97327 0.99502 1.00359 1.17961 0.93060 0.95478 0.88403 0.94657 1.21045 1.31370 1.12522 0.89726 0.92345 1.24946 0.94989 0.94978 0.98934 1.69866 1.36553 1.22846 1.23601 0.86631 0.79245 0.79815 0.82187 1.20156 1.21275 1.20287 1.20293 0.90109 0.93463 0.94289 1.20708 1.02427 0.95001 0.97426 1.20274 0.95663 0.98781 0.92954 1.19765 1.08348 0.94250 0.98756 1.24901 0.96173 0.97779 0.93912 1.76420 1.21355 0.94804 1.15987 1.47995 1.44983 1.10093 1.17732 1.21631 0.98535 0.79453 1.03097 1.18853 0.94163 0.94529 0.90611 1.19749 1.04890 1.00361 0.93514 0.95040 0.97204 0.89518 0.92839 0.85433 0.86357 0.79417 0.91746 0.89934 0.90132 0.86508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.78 37.16 0.33 -2.76 16 2 C 0.07 1.69 2.46 -92.93 -0.23 1.46 16 3 H 0.04 0.92 7.83 -51.93 -0.41 0.51 16 4 C -0.51 -13.52 8.22 -34.45 -0.28 -13.80 16 5 H 0.06 1.55 7.59 -52.48 -0.40 1.15 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.71 11.32 55.43 0.63 -24.08 16 8 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.02 0.45 4.71 -104.94 -0.49 -0.04 16 13 C -0.14 -2.66 8.60 -39.95 -0.34 -3.00 16 14 C -0.06 -0.96 10.07 -39.58 -0.40 -1.36 16 15 C -0.20 -3.58 6.37 -105.21 -0.67 -4.25 16 16 C 0.07 1.05 12.28 -15.15 -0.19 0.86 16 17 N -0.27 -4.52 12.40 31.87 0.40 -4.13 16 18 N -0.42 -7.01 4.05 -65.46 -0.27 -7.27 16 19 C 0.11 1.41 11.40 59.85 0.68 2.09 16 20 C 0.13 2.46 6.87 -84.18 -0.58 1.88 16 21 C -0.16 -3.23 9.57 -39.78 -0.38 -3.61 16 22 H 0.03 0.69 7.35 -51.93 -0.38 0.31 16 23 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 24 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 25 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.13 2.46 7.53 -52.49 -0.40 2.07 16 27 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.19 2.00 8.06 -52.49 -0.42 1.57 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.92 8.13 -51.93 -0.42 0.49 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.12 2.17 7.90 -52.49 -0.41 1.76 16 LS Contribution 274.51 15.07 4.14 4.14 Total: -1.00 -29.90 274.51 -6.76 -36.65 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -3.98 Total: -0.22 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -2.65 Total: -20.94 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.76 Total: -35.48 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.90 -6.76 -36.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261262895.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.262 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds