Wall clock time and date at job start Mon Mar 30 2020 03:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46988 * 2 1 4 4 C 1.50691 * 109.47277 * 239.99419 * 2 1 3 5 5 H 1.08004 * 119.99908 * 240.00336 * 4 2 1 6 6 C 1.37875 * 120.00052 * 60.00326 * 4 2 1 7 7 N 1.31512 * 120.00352 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00013 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47345 * 59.99834 * 8 6 4 10 10 H 1.48501 * 109.46980 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47335 * 299.99715 * 8 6 4 12 12 C 1.50701 * 109.46884 * 119.99487 * 2 1 3 13 13 C 1.38966 * 119.59158 * 59.99590 * 12 2 1 14 14 C 1.36470 * 120.62852 * 180.02562 * 13 12 2 15 15 C 1.39946 * 119.63729 * 359.97438 * 14 13 12 16 16 C 1.45924 * 134.03482 * 179.97438 * 15 14 13 17 17 N 1.30243 * 107.78857 * 180.02562 * 16 15 14 18 18 N 1.39876 * 110.08036 * 359.97438 * 17 16 15 19 19 C 1.46506 * 125.45792 * 179.97438 * 18 17 16 20 20 C 1.37034 * 109.07884 * 0.26637 * 18 17 16 21 21 C 1.36596 * 119.59403 * 240.02638 * 12 2 1 22 22 H 1.08997 * 109.46988 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47392 * 300.00981 * 1 2 3 24 24 H 1.09006 * 109.46645 * 60.00674 * 1 2 3 25 25 H 0.96993 * 120.00625 * 179.97438 * 7 6 4 26 26 H 1.07991 * 119.68674 * 0.02562 * 13 12 2 27 27 H 1.07998 * 120.17977 * 180.02562 * 14 13 12 28 28 H 1.07999 * 126.10978 * 0.06559 * 16 15 14 29 29 H 1.09001 * 109.47060 * 90.02922 * 19 18 17 30 30 H 1.09004 * 109.47073 * 210.02411 * 19 18 17 31 31 H 1.09000 * 109.47212 * 330.02494 * 19 18 17 32 32 H 1.08000 * 120.07190 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2395 -2.4826 7 7 0.9429 0.8294 -2.6035 8 14 2.3227 -1.1199 -4.0077 9 1 1.8283 -2.5201 -4.0079 10 1 1.8282 -0.4196 -5.2203 11 1 3.8077 -1.1193 -4.0075 12 6 2.0323 -0.7103 1.2306 13 6 1.6913 -2.0408 1.4422 14 6 2.1340 -2.7043 2.5495 15 6 2.9395 -2.0378 3.4798 16 6 3.5709 -2.4257 4.7369 17 7 4.2166 -1.3910 5.1937 18 7 4.0671 -0.3080 4.3212 19 6 4.6524 1.0219 4.5091 20 6 3.2801 -0.6883 3.2658 21 6 2.8166 -0.0383 2.1245 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7090 1.1610 -3.4845 26 1 1.0701 -2.5545 0.7236 27 1 1.8649 -3.7384 2.7065 28 1 3.5136 -3.3975 5.2046 29 1 5.6370 1.0547 4.0427 30 1 4.0075 1.7709 4.0495 31 1 4.7481 1.2295 5.5749 32 1 3.0743 0.9956 1.9481 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261262895.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:23 Heat of formation + Delta-G solvation = 62.096683 kcal Electronic energy + Delta-G solvation = -15373.996422 eV Core-core repulsion = 12913.858365 eV Total energy + Delta-G solvation = -2460.138057 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.08970 -38.83274 -35.74657 -34.33389 -32.87599 -31.18535 -29.44431 -27.36684 -27.18757 -24.20125 -23.39164 -21.83944 -21.01560 -18.43309 -17.80743 -17.30868 -16.61721 -16.36032 -15.99472 -15.25059 -14.86832 -14.61888 -14.12170 -13.89417 -13.61489 -13.42013 -13.22283 -13.01412 -12.79408 -12.38182 -12.20903 -12.07728 -11.93850 -11.70696 -11.29771 -10.99144 -10.88532 -10.45136 -9.26751 -8.72092 -8.08339 -6.22216 0.15311 0.70549 1.44444 1.45043 1.52599 1.55307 1.65437 2.44779 3.00508 3.20074 3.61508 3.74440 3.93956 4.23138 4.38951 4.44378 4.53810 4.56650 4.64275 4.78908 4.92062 4.95727 5.14369 5.22341 5.29173 5.52427 5.57700 5.64412 5.72741 6.01431 6.07197 6.11970 6.21588 6.37947 6.72028 6.85954 7.45576 8.96125 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037276 B = 0.006605 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.979327 B = 4237.952494 C = 4380.892710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.070 3.930 3 H 0.004 0.996 4 C -0.521 4.521 5 H 0.053 0.947 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.953 3.047 9 H -0.268 1.268 10 H -0.284 1.284 11 H -0.276 1.276 12 C -0.001 4.001 13 C -0.158 4.158 14 C -0.036 4.036 15 C -0.216 4.216 16 C 0.085 3.915 17 N -0.287 5.287 18 N -0.425 5.425 19 C 0.105 3.895 20 C 0.116 3.884 21 C -0.173 4.173 22 H 0.037 0.963 23 H 0.023 0.977 24 H 0.060 0.940 25 H 0.262 0.738 26 H 0.123 0.877 27 H 0.159 0.841 28 H 0.236 0.764 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.666 -4.470 11.932 13.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 H 0.022 0.978 4 C -0.559 4.559 5 H 0.072 0.928 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.779 3.221 9 H -0.193 1.193 10 H -0.209 1.209 11 H -0.201 1.201 12 C -0.003 4.003 13 C -0.177 4.177 14 C -0.056 4.056 15 C -0.224 4.224 16 C -0.112 4.112 17 N -0.099 5.099 18 N -0.215 5.215 19 C -0.036 4.036 20 C 0.002 3.998 21 C -0.195 4.195 22 H 0.056 0.944 23 H 0.042 0.958 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.141 0.859 27 H 0.177 0.823 28 H 0.252 0.748 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.425 -3.706 12.795 14.036 hybrid contribution -0.217 -0.082 -1.791 1.806 sum 4.208 -3.787 11.004 12.375 Atomic orbital electron populations 1.21618 0.96963 0.99633 0.99687 1.17801 0.93445 0.93942 0.89622 0.97757 1.21320 1.31215 1.12447 0.90940 0.92830 1.25687 0.95220 0.95671 1.01696 1.69996 1.37507 1.24017 1.24113 0.85684 0.78587 0.79032 0.78814 1.19283 1.20915 1.20128 1.20044 0.91918 0.94570 0.93794 1.20689 1.03767 0.94388 0.98861 1.20592 0.93598 1.00244 0.91146 1.20194 1.08372 0.93930 0.99875 1.25626 0.94102 0.99057 0.92397 1.76430 1.21990 0.95210 1.16245 1.48365 1.44645 1.11335 1.17109 1.21931 0.98951 0.77979 1.04717 1.18937 0.94689 0.95403 0.90758 1.19685 1.05187 1.00433 0.94208 0.94382 0.95790 0.92091 0.92878 0.85868 0.82302 0.74826 0.90748 0.89328 0.88085 0.86757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.83 8.78 71.98 0.63 -5.20 16 2 C 0.07 3.55 2.46 -12.29 -0.03 3.52 16 3 H 0.00 0.24 7.83 -2.39 -0.02 0.22 16 4 C -0.52 -28.31 8.22 25.60 0.21 -28.10 16 5 H 0.05 2.89 7.59 -2.91 -0.02 2.87 16 6 C 0.02 0.87 5.30 84.65 0.45 1.32 16 7 N -0.92 -52.14 11.32 21.45 0.24 -51.90 16 8 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 9 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 12 C 0.00 -0.03 4.71 -20.07 -0.09 -0.12 16 13 C -0.16 -6.03 8.60 22.03 0.19 -5.85 16 14 C -0.04 -1.12 10.07 22.27 0.22 -0.90 16 15 C -0.22 -7.01 6.37 -20.24 -0.13 -7.14 16 16 C 0.09 2.23 12.28 86.92 1.07 3.30 16 17 N -0.29 -8.63 12.40 -53.09 -0.66 -9.29 16 18 N -0.43 -13.48 4.05 -361.03 -1.46 -14.94 16 19 C 0.10 2.41 11.40 127.77 1.46 3.87 16 20 C 0.12 4.21 6.87 39.21 0.27 4.48 16 21 C -0.17 -6.94 9.57 22.14 0.21 -6.73 16 22 H 0.04 1.72 7.35 -2.39 -0.02 1.70 16 23 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.06 3.23 6.07 -2.38 -0.01 3.22 16 25 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 26 H 0.12 4.72 7.53 -2.92 -0.02 4.70 16 27 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 28 H 0.24 3.64 8.06 -2.91 -0.02 3.62 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.09 1.90 8.13 -2.38 -0.02 1.88 16 31 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.11 4.44 7.90 -2.91 -0.02 4.42 16 Total: -1.00 -64.68 274.51 5.71 -58.97 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.11 Total: 9.63 kcal Atomic # 6 Polarization: -42.00 SS G_CDS: 4.46 Total: -37.55 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -1.88 Total: -76.13 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -64.68 5.71 -58.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261262895.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.064 kcal (2) G-P(sol) polarization free energy of solvation -64.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds