Wall clock time and date at job start Mon Mar 30 2020 03:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47394 * 2 1 4 4 C 1.50702 * 109.47301 * 120.00215 * 2 1 3 5 5 H 1.07999 * 120.00169 * 119.99863 * 4 2 1 6 6 C 1.37876 * 119.99564 * 299.99671 * 4 2 1 7 7 N 1.31507 * 120.00362 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99680 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47365 * 90.00458 * 8 6 4 10 10 H 1.48505 * 109.47035 * 210.00282 * 8 6 4 11 11 H 1.48499 * 109.47232 * 330.00128 * 8 6 4 12 12 C 1.50704 * 109.47174 * 240.00060 * 2 1 3 13 13 C 1.38970 * 119.68499 * 300.03958 * 12 2 1 14 14 C 1.36584 * 120.81350 * 180.02562 * 13 12 2 15 15 C 1.39289 * 119.85617 * 359.95665 * 14 13 12 16 16 C 1.40812 * 119.41441 * 0.02562 * 15 14 13 17 17 C 1.45927 * 106.31927 * 180.02562 * 16 15 14 18 18 N 1.30243 * 107.78442 * 359.97438 * 17 16 15 19 19 N 1.37036 * 133.85202 * 180.02562 * 15 14 13 20 20 C 1.46502 * 125.45988 * 359.97438 * 19 15 14 21 21 C 1.36465 * 119.68805 * 120.00071 * 12 2 1 22 22 H 1.09000 * 109.46932 * 300.00342 * 1 2 3 23 23 H 1.09001 * 109.47058 * 59.99697 * 1 2 3 24 24 H 1.08996 * 109.47305 * 179.97438 * 1 2 3 25 25 H 0.97007 * 120.00306 * 180.02562 * 7 6 4 26 26 H 1.08003 * 119.58805 * 359.97438 * 13 12 2 27 27 H 1.07999 * 120.07293 * 179.97438 * 14 13 12 28 28 H 1.08001 * 126.10748 * 179.97438 * 17 16 15 29 29 H 1.09002 * 109.46881 * 269.97364 * 20 19 15 30 30 H 1.08997 * 109.47238 * 29.97797 * 20 19 15 31 31 H 1.08997 * 109.46886 * 149.98014 * 20 19 15 32 32 H 1.08003 * 120.18260 * 0.27177 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4118 10 1 1.3445 -0.9490 5.1123 11 1 2.4881 -2.5653 3.7122 12 6 2.0323 -0.7104 -1.2305 13 6 1.6919 -2.0407 -1.4443 14 6 2.1349 -2.7070 -2.5513 15 6 2.9372 -2.0500 -3.4813 16 6 3.2829 -0.7020 -3.2665 17 6 4.1152 -0.3069 -4.3981 18 7 4.2325 -1.3381 -5.1850 19 7 3.5264 -2.4255 -4.6601 20 6 3.4322 -3.7531 -5.2724 21 6 2.8165 -0.0411 -2.1246 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 0.7088 1.1613 3.4844 26 1 1.0701 -2.5542 -0.7259 27 1 1.8634 -3.7409 -2.7054 28 1 4.5554 0.6668 -4.5551 29 1 4.2482 -4.3788 -4.9106 30 1 2.4788 -4.2093 -5.0058 31 1 3.4995 -3.6590 -6.3562 32 1 3.0797 0.9916 -1.9493 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261282917.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:18 Heat of formation + Delta-G solvation = 79.587419 kcal Electronic energy + Delta-G solvation = -15321.022438 eV Core-core repulsion = 12861.642836 eV Total energy + Delta-G solvation = -2459.379602 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.78976 -37.32232 -33.84993 -33.17443 -31.09809 -29.68904 -28.09604 -26.08594 -25.09948 -22.45827 -22.18531 -20.34225 -19.61465 -16.78032 -16.45523 -15.51634 -15.21273 -14.85888 -14.28930 -14.01134 -13.35505 -12.96457 -12.88475 -12.65728 -12.32454 -11.86227 -11.55897 -11.19899 -10.93054 -10.74903 -10.65155 -10.46479 -10.25459 -10.04143 -9.52526 -9.43030 -8.91734 -8.36636 -8.06070 -7.17950 -6.00183 -4.06965 1.46686 2.18016 2.69104 2.89431 3.30286 3.37161 3.40421 4.37643 4.51760 4.69121 5.01971 5.12503 5.23600 5.30647 5.41444 5.47732 5.67644 5.86957 6.04237 6.21567 6.47963 6.53212 6.82146 6.86381 6.98722 7.14960 7.19393 7.34752 7.36426 7.61164 7.73748 7.95934 7.98228 8.11206 8.41167 8.95842 9.57788 11.05170 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.041327 B = 0.006328 C = 0.006109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.356287 B = 4423.788123 C = 4582.572662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.075 3.925 3 H 0.035 0.965 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.891 3.109 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C -0.067 4.067 13 C -0.047 4.047 14 C -0.156 4.156 15 C 0.108 3.892 16 C -0.178 4.178 17 C 0.068 3.932 18 N -0.270 5.270 19 N -0.420 5.420 20 C 0.117 3.883 21 C -0.062 4.062 22 H 0.085 0.915 23 H 0.008 0.992 24 H 0.027 0.973 25 H 0.260 0.740 26 H 0.130 0.870 27 H 0.114 0.886 28 H 0.191 0.809 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.363 -5.305 -11.184 12.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.056 3.944 3 H 0.053 0.947 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.719 3.281 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.068 4.068 13 C -0.068 4.068 14 C -0.178 4.178 15 C -0.005 4.005 16 C -0.186 4.186 17 C -0.129 4.129 18 N -0.083 5.083 19 N -0.210 5.210 20 C -0.025 4.025 21 C -0.083 4.083 22 H 0.103 0.897 23 H 0.028 0.972 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.148 0.852 27 H 0.132 0.868 28 H 0.208 0.792 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.779 -5.813 -12.222 13.816 hybrid contribution 0.048 -0.288 1.583 1.609 sum 2.827 -6.101 -10.639 12.586 Atomic orbital electron populations 1.21791 0.97775 0.99200 1.00259 1.17844 0.92751 0.95384 0.88378 0.94694 1.21129 1.31060 1.12407 0.89938 0.92500 1.24949 0.95046 0.95012 0.98900 1.69881 1.36669 1.22930 1.23382 0.86607 0.78608 0.80111 0.82770 1.20708 1.21257 1.19934 1.20208 0.95881 0.93929 0.96773 1.20772 0.96795 0.94505 0.94692 1.19738 1.02893 0.99662 0.95474 1.18717 0.98106 0.94813 0.88817 1.19897 1.05858 0.94002 0.98804 1.24966 0.98235 0.97864 0.91830 1.76419 1.14824 0.94587 1.22430 1.47938 1.44824 1.09948 1.18317 1.21584 1.02367 0.79598 0.98990 1.20307 0.96933 0.99469 0.91562 0.89672 0.97242 0.95362 0.92969 0.85220 0.86826 0.79230 0.91927 0.90204 0.90131 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.78 37.16 0.33 -2.78 16 2 C 0.07 1.82 2.46 -92.92 -0.23 1.59 16 3 H 0.03 0.91 7.84 -51.93 -0.41 0.50 16 4 C -0.51 -13.48 8.23 -34.44 -0.28 -13.77 16 5 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.80 11.32 55.43 0.63 -24.17 16 8 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 C -0.07 -1.41 4.70 -104.99 -0.49 -1.90 16 13 C -0.05 -0.91 8.61 -39.91 -0.34 -1.26 16 14 C -0.16 -2.68 9.97 -39.79 -0.40 -3.07 16 15 C 0.11 1.92 6.87 -84.18 -0.58 1.34 16 16 C -0.18 -3.24 6.37 -105.21 -0.67 -3.91 16 17 C 0.07 1.06 12.28 -15.15 -0.19 0.88 16 18 N -0.27 -4.44 12.40 31.87 0.40 -4.05 16 19 N -0.42 -6.70 4.05 -65.47 -0.27 -6.97 16 20 C 0.12 1.28 11.40 59.85 0.68 1.97 16 21 C -0.06 -1.21 9.67 -39.58 -0.38 -1.59 16 22 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 23 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 24 H 0.03 0.62 7.35 -51.93 -0.38 0.24 16 25 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.13 2.47 7.53 -52.48 -0.40 2.08 16 27 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 28 H 0.19 2.19 8.06 -52.49 -0.42 1.76 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.12 2.18 7.91 -52.48 -0.42 1.76 16 LS Contribution 274.55 15.07 4.14 4.14 Total: -1.00 -30.02 274.55 -6.76 -36.78 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -3.98 Total: -0.71 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -2.65 Total: -20.92 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.76 Total: -35.18 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.02 -6.76 -36.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261282917.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.367 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds