Wall clock time and date at job start Mon Mar 30 2020 03:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47394 * 2 1 4 4 C 1.50702 * 109.47301 * 120.00215 * 2 1 3 5 5 H 1.07999 * 120.00169 * 119.99863 * 4 2 1 6 6 C 1.37876 * 119.99564 * 299.99671 * 4 2 1 7 7 N 1.31507 * 120.00362 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99680 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47365 * 90.00458 * 8 6 4 10 10 H 1.48505 * 109.47035 * 210.00282 * 8 6 4 11 11 H 1.48499 * 109.47232 * 330.00128 * 8 6 4 12 12 C 1.50704 * 109.47174 * 240.00060 * 2 1 3 13 13 C 1.38970 * 119.68499 * 300.03958 * 12 2 1 14 14 C 1.36584 * 120.81350 * 180.02562 * 13 12 2 15 15 C 1.39289 * 119.85617 * 359.95665 * 14 13 12 16 16 C 1.40812 * 119.41441 * 0.02562 * 15 14 13 17 17 C 1.45927 * 106.31927 * 180.02562 * 16 15 14 18 18 N 1.30243 * 107.78442 * 359.97438 * 17 16 15 19 19 N 1.37036 * 133.85202 * 180.02562 * 15 14 13 20 20 C 1.46502 * 125.45988 * 359.97438 * 19 15 14 21 21 C 1.36465 * 119.68805 * 120.00071 * 12 2 1 22 22 H 1.09000 * 109.46932 * 300.00342 * 1 2 3 23 23 H 1.09001 * 109.47058 * 59.99697 * 1 2 3 24 24 H 1.08996 * 109.47305 * 179.97438 * 1 2 3 25 25 H 0.97007 * 120.00306 * 180.02562 * 7 6 4 26 26 H 1.08003 * 119.58805 * 359.97438 * 13 12 2 27 27 H 1.07999 * 120.07293 * 179.97438 * 14 13 12 28 28 H 1.08001 * 126.10748 * 179.97438 * 17 16 15 29 29 H 1.09002 * 109.46881 * 269.97364 * 20 19 15 30 30 H 1.08997 * 109.47238 * 29.97797 * 20 19 15 31 31 H 1.08997 * 109.46886 * 149.98014 * 20 19 15 32 32 H 1.08003 * 120.18260 * 0.27177 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4118 10 1 1.3445 -0.9490 5.1123 11 1 2.4881 -2.5653 3.7122 12 6 2.0323 -0.7104 -1.2305 13 6 1.6919 -2.0407 -1.4443 14 6 2.1349 -2.7070 -2.5513 15 6 2.9372 -2.0500 -3.4813 16 6 3.2829 -0.7020 -3.2665 17 6 4.1152 -0.3069 -4.3981 18 7 4.2325 -1.3381 -5.1850 19 7 3.5264 -2.4255 -4.6601 20 6 3.4322 -3.7531 -5.2724 21 6 2.8165 -0.0411 -2.1246 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 0.7088 1.1613 3.4844 26 1 1.0701 -2.5542 -0.7259 27 1 1.8634 -3.7409 -2.7054 28 1 4.5554 0.6668 -4.5551 29 1 4.2482 -4.3788 -4.9106 30 1 2.4788 -4.2093 -5.0058 31 1 3.4995 -3.6590 -6.3562 32 1 3.0797 0.9916 -1.9493 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261282917.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:18 Heat of formation + Delta-G solvation = 63.059841 kcal Electronic energy + Delta-G solvation = -15321.739127 eV Core-core repulsion = 12861.642836 eV Total energy + Delta-G solvation = -2460.096291 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.09077 -38.81849 -35.67757 -34.34441 -32.91079 -31.07094 -29.58548 -27.27062 -27.10246 -23.89826 -23.75834 -21.56928 -21.25563 -18.37756 -17.97353 -17.16736 -16.55840 -16.35057 -15.97040 -15.20330 -14.87737 -14.41962 -14.27661 -13.89685 -13.60329 -13.42997 -13.20764 -12.97791 -12.80406 -12.36416 -12.18647 -12.07884 -12.01482 -11.65824 -11.22433 -11.02466 -10.69054 -10.41981 -9.45892 -8.57797 -8.03940 -6.18189 0.10240 0.72879 1.43994 1.45580 1.54923 1.57259 1.61937 2.46400 3.00588 3.23273 3.61639 3.73239 3.93611 4.25743 4.38134 4.46675 4.53906 4.62184 4.68479 4.79047 4.92836 5.00439 5.16216 5.22367 5.33109 5.52000 5.58348 5.64463 5.74780 5.99045 6.13107 6.15811 6.25631 6.43252 6.69903 6.90851 7.49542 8.99398 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.041327 B = 0.006328 C = 0.006109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.356287 B = 4423.788123 C = 4582.572662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.076 3.924 3 H 0.005 0.995 4 C -0.518 4.518 5 H 0.051 0.949 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.951 3.049 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.268 1.268 12 C -0.092 4.092 13 C -0.061 4.061 14 C -0.142 4.142 15 C 0.099 3.901 16 C -0.196 4.196 17 C 0.073 3.927 18 N -0.280 5.280 19 N -0.420 5.420 20 C 0.104 3.896 21 C -0.066 4.066 22 H 0.058 0.942 23 H 0.023 0.977 24 H 0.034 0.966 25 H 0.261 0.739 26 H 0.127 0.873 27 H 0.148 0.852 28 H 0.226 0.774 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.093 -6.831 -12.456 14.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.058 3.942 3 H 0.024 0.976 4 C -0.556 4.556 5 H 0.070 0.930 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.777 3.223 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.193 1.193 12 C -0.094 4.094 13 C -0.082 4.082 14 C -0.164 4.164 15 C -0.015 4.015 16 C -0.204 4.204 17 C -0.124 4.124 18 N -0.093 5.093 19 N -0.210 5.210 20 C -0.036 4.036 21 C -0.086 4.086 22 H 0.077 0.923 23 H 0.042 0.958 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.145 0.855 27 H 0.165 0.835 28 H 0.242 0.758 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.518 -7.363 -13.522 15.793 hybrid contribution -0.135 0.165 1.848 1.861 sum 3.383 -7.198 -11.673 14.125 Atomic orbital electron populations 1.21630 0.97482 0.99317 0.99557 1.17687 0.93059 0.93923 0.89563 0.97635 1.21404 1.30807 1.12279 0.91150 0.93035 1.25675 0.95322 0.95718 1.01639 1.70008 1.37654 1.24110 1.23897 0.85667 0.77983 0.79244 0.79436 1.20523 1.20885 1.19282 1.19957 0.98032 0.95004 0.96401 1.20731 0.97713 0.93927 0.95828 1.19943 1.01469 1.00908 0.94076 1.18944 0.98019 0.94906 0.89582 1.20144 1.06556 0.94609 0.99113 1.25513 0.97346 0.99131 0.90400 1.76415 1.15095 0.95008 1.22739 1.48360 1.43835 1.11179 1.17662 1.21995 1.04071 0.77627 0.99895 1.20331 0.96644 0.99755 0.91904 0.92334 0.95794 0.94723 0.93002 0.85541 0.83460 0.75816 0.90538 0.88247 0.88535 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.85 8.78 71.98 0.63 -5.22 16 2 C 0.08 3.80 2.46 -12.29 -0.03 3.77 16 3 H 0.01 0.30 7.84 -2.38 -0.02 0.28 16 4 C -0.52 -28.05 8.23 25.60 0.21 -27.84 16 5 H 0.05 2.78 7.60 -2.91 -0.02 2.76 16 6 C 0.01 0.82 5.30 84.66 0.45 1.26 16 7 N -0.92 -52.21 11.32 21.45 0.24 -51.97 16 8 Si 0.95 43.15 29.54 68.60 2.03 45.18 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 12 C -0.09 -3.95 4.70 -20.10 -0.09 -4.04 16 13 C -0.06 -2.34 8.61 22.06 0.19 -2.15 16 14 C -0.14 -4.58 9.97 22.14 0.22 -4.36 16 15 C 0.10 3.31 6.87 39.21 0.27 3.58 16 16 C -0.20 -6.86 6.37 -20.24 -0.13 -6.99 16 17 C 0.07 2.10 12.28 86.92 1.07 3.17 16 18 N -0.28 -8.45 12.40 -53.09 -0.66 -9.11 16 19 N -0.42 -12.18 4.05 -361.05 -1.46 -13.65 16 20 C 0.10 1.92 11.40 127.77 1.46 3.37 16 21 C -0.07 -2.55 9.67 22.27 0.22 -2.34 16 22 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 23 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.03 1.55 7.35 -2.39 -0.02 1.54 16 25 H 0.26 14.15 8.31 -92.70 -0.77 13.38 16 26 H 0.13 4.79 7.53 -2.91 -0.02 4.77 16 27 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 28 H 0.23 4.52 8.06 -2.91 -0.02 4.50 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.13 4.56 7.91 -2.91 -0.02 4.54 16 Total: -1.00 -64.29 274.55 5.71 -58.58 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 1.11 Total: 8.75 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 4.46 Total: -37.78 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -1.88 Total: -74.72 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -64.29 5.71 -58.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261282917.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.635 kcal (2) G-P(sol) polarization free energy of solvation -64.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds