Wall clock time and date at job start Mon Mar 30 2020 03:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46871 * 2 1 4 4 C 1.50702 * 109.47233 * 240.00553 * 2 1 3 5 5 H 1.07997 * 119.99872 * 239.99841 * 4 2 1 6 6 C 1.37882 * 119.99854 * 59.99459 * 4 2 1 7 7 N 1.31507 * 120.00249 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99705 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46970 * 60.00540 * 8 6 4 10 10 H 1.48496 * 109.46959 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47346 * 300.00479 * 8 6 4 12 12 C 1.50695 * 109.47465 * 120.00507 * 2 1 3 13 13 C 1.36636 * 120.05928 * 59.97451 * 12 2 1 14 14 C 1.38731 * 120.67156 * 180.02562 * 13 12 2 15 15 C 1.37897 * 120.45254 * 0.02562 * 14 13 12 16 16 C 1.38800 * 119.68558 * 359.71232 * 15 14 13 17 17 C 1.39703 * 120.05753 * 240.00341 * 12 2 1 18 18 N 1.35787 * 133.60138 * 359.97082 * 17 12 2 19 19 C 1.30117 * 109.64388 * 180.02562 * 18 17 12 20 20 N 1.36042 * 110.10635 * 0.02562 * 19 18 17 21 21 C 1.46499 * 126.34747 * 180.02562 * 20 19 18 22 22 H 1.08994 * 109.46821 * 299.99699 * 1 2 3 23 23 H 1.08998 * 109.47143 * 59.99527 * 1 2 3 24 24 H 1.09001 * 109.46871 * 179.97438 * 1 2 3 25 25 H 0.97003 * 120.00103 * 180.02562 * 7 6 4 26 26 H 1.08006 * 119.66623 * 0.02562 * 13 12 2 27 27 H 1.08002 * 119.77213 * 180.02562 * 14 13 12 28 28 H 1.07996 * 120.15670 * 180.02562 * 15 14 13 29 29 H 1.07995 * 124.94304 * 179.97438 * 19 18 17 30 30 H 1.09002 * 109.47391 * 90.01980 * 21 20 19 31 31 H 1.09001 * 109.46813 * 330.02036 * 21 20 19 32 32 H 1.09004 * 109.47041 * 210.02163 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2391 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3225 -1.1192 -4.0081 9 1 1.8281 -2.5195 -4.0084 10 1 1.8279 -0.4189 -5.2205 11 1 3.8075 -1.1186 -4.0079 12 6 2.0324 -0.7105 1.2303 13 6 1.7027 -2.0185 1.4479 14 6 2.1578 -2.6847 2.5765 15 6 2.9513 -2.0357 3.4988 16 6 3.3011 -0.7085 3.2917 17 6 2.8356 -0.0327 2.1508 18 7 3.3228 1.2331 2.2149 19 6 4.0344 1.3737 3.2951 20 7 4.0534 0.2089 3.9976 21 6 4.7462 -0.0287 5.2663 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7088 1.1615 -3.4844 26 1 1.0815 -2.5391 0.7341 27 1 1.8886 -3.7188 2.7338 28 1 3.3033 -2.5591 4.3754 29 1 4.5375 2.2826 3.5904 30 1 4.0787 0.2082 6.0948 31 1 5.6318 0.6044 5.3208 32 1 5.0436 -1.0756 5.3274 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261284086.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:26 Heat of formation + Delta-G solvation = 69.141026 kcal Electronic energy + Delta-G solvation = -15580.039890 eV Core-core repulsion = 13120.207299 eV Total energy + Delta-G solvation = -2459.832591 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.56920 -37.17735 -34.27343 -33.54084 -31.15958 -28.90261 -27.88017 -26.65643 -24.99865 -22.89153 -21.61713 -21.06764 -18.84017 -16.79753 -16.43042 -15.83693 -15.42799 -15.13949 -14.49117 -13.73598 -13.25418 -13.08954 -13.00167 -12.63491 -12.32987 -11.50217 -11.40122 -11.19114 -11.03726 -10.80080 -10.65170 -10.29020 -9.95588 -9.80713 -9.63595 -9.01181 -8.79881 -8.23487 -7.77416 -7.21474 -5.88160 -3.94252 1.61602 2.21081 2.96937 3.34135 3.39008 3.42898 3.46178 4.48706 4.65796 4.74286 4.83568 4.99212 5.10752 5.30281 5.42263 5.52446 5.67701 6.01429 6.08223 6.13744 6.49419 6.78295 6.97137 6.99095 7.05008 7.30913 7.33244 7.39566 7.54152 7.71633 7.84862 8.18593 8.22310 8.47612 8.52450 9.07898 9.68505 11.17619 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034784 B = 0.007481 C = 0.007081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.774350 B = 3741.877763 C = 3953.017389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.070 3.930 3 H 0.047 0.953 4 C -0.504 4.504 5 H 0.055 0.945 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.892 3.108 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.033 3.967 13 C -0.142 4.142 14 C -0.090 4.090 15 C -0.153 4.153 16 C 0.047 3.953 17 C 0.038 3.962 18 N -0.472 5.472 19 C 0.230 3.770 20 N -0.507 5.507 21 C 0.087 3.913 22 H 0.007 0.993 23 H 0.085 0.915 24 H 0.028 0.972 25 H 0.260 0.740 26 H 0.129 0.871 27 H 0.119 0.881 28 H 0.108 0.892 29 H 0.205 0.795 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.327 -2.989 14.401 15.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.052 3.948 3 H 0.066 0.934 4 C -0.542 4.542 5 H 0.074 0.926 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.720 3.280 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.204 1.204 12 C 0.032 3.968 13 C -0.163 4.163 14 C -0.109 4.109 15 C -0.175 4.175 16 C -0.061 4.061 17 C -0.079 4.079 18 N -0.189 5.189 19 C -0.055 4.055 20 N -0.200 5.200 21 C -0.056 4.056 22 H 0.026 0.974 23 H 0.104 0.896 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.147 0.853 27 H 0.137 0.863 28 H 0.126 0.874 29 H 0.222 0.778 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.144 -2.263 13.744 14.849 hybrid contribution 0.701 -0.999 -0.077 1.223 sum 5.845 -3.262 13.668 15.218 Atomic orbital electron populations 1.21777 0.97612 0.99103 1.00215 1.17890 0.92602 0.96493 0.87856 0.93439 1.21076 1.31064 1.12158 0.89878 0.92630 1.24939 0.95182 0.95015 0.98779 1.69888 1.36786 1.22830 1.23310 0.86661 0.79208 0.79722 0.82419 1.20277 1.21325 1.20394 1.19783 0.90194 0.92906 0.93939 1.20569 1.03285 0.94505 0.97906 1.20868 0.97018 0.98971 0.94087 1.19608 1.05016 0.91202 1.01636 1.18904 0.99093 0.92944 0.95114 1.19022 1.02905 0.90383 0.95561 1.70418 1.12569 1.18145 1.17789 1.25218 1.00484 0.90378 0.89451 1.45185 1.43528 1.10862 1.20468 1.21803 0.96965 1.03259 0.83598 0.97415 0.89610 0.95329 0.93008 0.85312 0.86270 0.87363 0.77810 0.91464 0.89961 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 8.78 37.16 0.33 -2.99 16 2 C 0.07 1.89 2.48 -92.92 -0.23 1.66 16 3 H 0.05 1.43 7.76 -51.93 -0.40 1.03 16 4 C -0.50 -14.42 8.23 -34.44 -0.28 -14.70 16 5 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -26.28 11.32 55.43 0.63 -25.65 16 8 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.03 0.79 4.74 -104.66 -0.50 0.29 16 13 C -0.14 -2.95 8.62 -39.98 -0.34 -3.30 16 14 C -0.09 -1.54 10.03 -39.52 -0.40 -1.94 16 15 C -0.15 -2.54 10.05 -39.50 -0.40 -2.94 16 16 C 0.05 0.88 6.87 -83.99 -0.58 0.30 16 17 C 0.04 0.86 6.89 -84.70 -0.58 0.28 16 18 N -0.47 -10.23 11.03 -12.05 -0.13 -10.36 16 19 C 0.23 3.67 12.50 -89.77 -1.12 2.55 16 20 N -0.51 -7.57 3.21 -123.18 -0.39 -7.96 16 21 C 0.09 0.77 11.18 59.85 0.67 1.44 16 22 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 23 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 24 H 0.03 0.67 7.37 -51.93 -0.38 0.29 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.13 2.64 7.52 -52.48 -0.39 2.25 16 27 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.21 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 273.46 15.07 4.12 4.12 Total: -1.00 -33.69 273.46 -8.32 -42.01 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -3.99 Total: -1.42 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -3.53 Total: -17.66 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.10 Total: -43.98 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.69 -8.32 -42.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261284086.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.154 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds