Wall clock time and date at job start Mon Mar 30 2020 03:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46871 * 2 1 4 4 C 1.50702 * 109.47233 * 240.00553 * 2 1 3 5 5 H 1.07997 * 119.99872 * 239.99841 * 4 2 1 6 6 C 1.37882 * 119.99854 * 59.99459 * 4 2 1 7 7 N 1.31507 * 120.00249 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99705 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46970 * 60.00540 * 8 6 4 10 10 H 1.48496 * 109.46959 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47346 * 300.00479 * 8 6 4 12 12 C 1.50695 * 109.47465 * 120.00507 * 2 1 3 13 13 C 1.36636 * 120.05928 * 59.97451 * 12 2 1 14 14 C 1.38731 * 120.67156 * 180.02562 * 13 12 2 15 15 C 1.37897 * 120.45254 * 0.02562 * 14 13 12 16 16 C 1.38800 * 119.68558 * 359.71232 * 15 14 13 17 17 C 1.39703 * 120.05753 * 240.00341 * 12 2 1 18 18 N 1.35787 * 133.60138 * 359.97082 * 17 12 2 19 19 C 1.30117 * 109.64388 * 180.02562 * 18 17 12 20 20 N 1.36042 * 110.10635 * 0.02562 * 19 18 17 21 21 C 1.46499 * 126.34747 * 180.02562 * 20 19 18 22 22 H 1.08994 * 109.46821 * 299.99699 * 1 2 3 23 23 H 1.08998 * 109.47143 * 59.99527 * 1 2 3 24 24 H 1.09001 * 109.46871 * 179.97438 * 1 2 3 25 25 H 0.97003 * 120.00103 * 180.02562 * 7 6 4 26 26 H 1.08006 * 119.66623 * 0.02562 * 13 12 2 27 27 H 1.08002 * 119.77213 * 180.02562 * 14 13 12 28 28 H 1.07996 * 120.15670 * 180.02562 * 15 14 13 29 29 H 1.07995 * 124.94304 * 179.97438 * 19 18 17 30 30 H 1.09002 * 109.47391 * 90.01980 * 21 20 19 31 31 H 1.09001 * 109.46813 * 330.02036 * 21 20 19 32 32 H 1.09004 * 109.47041 * 210.02163 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2391 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3225 -1.1192 -4.0081 9 1 1.8281 -2.5195 -4.0084 10 1 1.8279 -0.4189 -5.2205 11 1 3.8075 -1.1186 -4.0079 12 6 2.0324 -0.7105 1.2303 13 6 1.7027 -2.0185 1.4479 14 6 2.1578 -2.6847 2.5765 15 6 2.9513 -2.0357 3.4988 16 6 3.3011 -0.7085 3.2917 17 6 2.8356 -0.0327 2.1508 18 7 3.3228 1.2331 2.2149 19 6 4.0344 1.3737 3.2951 20 7 4.0534 0.2089 3.9976 21 6 4.7462 -0.0287 5.2663 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7088 1.1615 -3.4844 26 1 1.0815 -2.5391 0.7341 27 1 1.8886 -3.7188 2.7338 28 1 3.3033 -2.5591 4.3754 29 1 4.5375 2.2826 3.5904 30 1 4.0787 0.2082 6.0948 31 1 5.6318 0.6044 5.3208 32 1 5.0436 -1.0756 5.3274 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261284086.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:26 Heat of formation + Delta-G solvation = 48.878377 kcal Electronic energy + Delta-G solvation = -15580.918545 eV Core-core repulsion = 13120.207299 eV Total energy + Delta-G solvation = -2460.711246 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.89660 -38.69354 -36.04573 -34.91630 -33.07443 -30.30155 -29.53826 -27.63999 -27.20304 -24.43827 -23.01994 -22.70916 -20.35586 -18.43818 -17.80917 -17.61997 -16.71102 -16.56976 -16.25670 -15.26711 -14.83809 -14.39210 -14.31761 -13.98290 -13.51505 -13.42379 -12.99046 -12.85931 -12.76042 -12.71901 -12.33942 -12.14695 -11.99468 -11.54089 -11.16518 -10.80000 -10.60112 -10.41461 -9.16729 -8.70278 -8.05769 -6.21246 0.23954 0.74187 1.40436 1.43538 1.51169 1.88883 2.03753 2.44223 3.10352 3.21099 3.61448 3.80454 4.01218 4.28166 4.33371 4.52130 4.61657 4.69015 4.76410 4.78449 4.91749 4.92250 5.15414 5.25196 5.43985 5.54735 5.59230 5.65943 5.76038 6.07521 6.17437 6.18718 6.38231 6.44407 6.87478 7.13564 7.45408 8.98589 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034784 B = 0.007481 C = 0.007081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.774350 B = 3741.877763 C = 3953.017389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.076 3.924 3 H -0.003 1.003 4 C -0.520 4.520 5 H 0.050 0.950 6 C 0.010 3.990 7 N -0.920 5.920 8 Si 0.959 3.041 9 H -0.264 1.264 10 H -0.281 1.281 11 H -0.277 1.277 12 C -0.017 4.017 13 C -0.147 4.147 14 C -0.092 4.092 15 C -0.132 4.132 16 C 0.038 3.962 17 C 0.000 4.000 18 N -0.547 5.547 19 C 0.251 3.749 20 N -0.498 5.498 21 C 0.077 3.923 22 H 0.013 0.987 23 H 0.059 0.941 24 H 0.038 0.962 25 H 0.261 0.739 26 H 0.119 0.881 27 H 0.161 0.839 28 H 0.156 0.844 29 H 0.255 0.745 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.052 -4.692 16.886 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.057 3.943 3 H 0.015 0.985 4 C -0.558 4.558 5 H 0.068 0.932 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.784 3.216 9 H -0.189 1.189 10 H -0.206 1.206 11 H -0.202 1.202 12 C -0.019 4.019 13 C -0.168 4.168 14 C -0.111 4.111 15 C -0.152 4.152 16 C -0.071 4.071 17 C -0.117 4.117 18 N -0.266 5.266 19 C -0.034 4.034 20 N -0.189 5.189 21 C -0.064 4.064 22 H 0.032 0.968 23 H 0.078 0.922 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.137 0.863 27 H 0.179 0.821 28 H 0.173 0.827 29 H 0.270 0.730 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.886 -3.982 16.280 18.119 hybrid contribution 0.253 -0.400 -0.672 0.822 sum 7.139 -4.382 15.608 17.714 Atomic orbital electron populations 1.21592 0.97403 0.99283 0.99097 1.17601 0.92859 0.94027 0.89796 0.98499 1.21358 1.31102 1.12159 0.91178 0.93153 1.25800 0.95302 0.95748 1.01940 1.70041 1.37752 1.24145 1.23997 0.85599 0.78477 0.79055 0.78452 1.18891 1.20594 1.20216 1.19573 0.93760 0.94491 0.94057 1.20612 1.03326 0.93536 0.99303 1.21223 0.96603 1.00654 0.92612 1.20133 1.02676 0.90209 1.02228 1.19147 0.99486 0.94008 0.94477 1.19250 1.03788 0.91522 0.97131 1.70341 1.15901 1.18957 1.21430 1.26135 0.97812 0.91922 0.87577 1.45532 1.42360 1.09467 1.21589 1.22286 0.98044 1.05050 0.80973 0.96766 0.92223 0.94292 0.92945 0.86300 0.82131 0.82681 0.72960 0.89542 0.86825 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.31 8.78 71.98 0.63 -5.68 16 2 C 0.08 4.38 2.48 -12.29 -0.03 4.35 16 3 H 0.00 -0.21 7.76 -2.38 -0.02 -0.23 16 4 C -0.52 -31.24 8.23 25.60 0.21 -31.03 16 5 H 0.05 2.98 7.60 -2.91 -0.02 2.96 16 6 C 0.01 0.60 5.30 84.66 0.45 1.05 16 7 N -0.92 -56.85 11.32 21.45 0.24 -56.60 16 8 Si 0.96 46.08 29.54 68.60 2.03 48.10 16 9 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 C -0.02 -0.86 4.74 -19.89 -0.09 -0.96 16 13 C -0.15 -6.19 8.62 22.01 0.19 -6.00 16 14 C -0.09 -2.91 10.03 22.31 0.22 -2.69 16 15 C -0.13 -3.88 10.05 22.32 0.22 -3.65 16 16 C 0.04 1.35 6.87 38.86 0.27 1.61 16 17 C 0.00 -0.01 6.89 39.45 0.27 0.26 16 18 N -0.55 -24.39 11.03 -192.03 -2.12 -26.51 16 19 C 0.25 7.57 12.50 180.05 2.25 9.82 16 20 N -0.50 -13.26 3.21 -543.63 -1.74 -15.00 16 21 C 0.08 0.97 11.18 127.77 1.43 2.39 16 22 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.06 3.51 6.07 -2.39 -0.01 3.50 16 24 H 0.04 1.95 7.37 -2.39 -0.02 1.94 16 25 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 26 H 0.12 5.03 7.52 -2.91 -0.02 5.01 16 27 H 0.16 3.69 8.06 -2.91 -0.02 3.66 16 28 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 29 H 0.25 4.51 8.06 -2.91 -0.02 4.49 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -80.11 273.46 5.54 -74.57 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: 1.11 Total: 5.96 kcal Atomic # 6 Polarization: -36.54 SS G_CDS: 6.02 Total: -30.52 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -3.62 Total: -98.12 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -80.11 5.54 -74.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261284086.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.448 kcal (2) G-P(sol) polarization free energy of solvation -80.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds