Wall clock time and date at job start Mon Mar 30 2020 03:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47031 * 2 1 4 4 C 1.50694 * 109.47480 * 120.00718 * 2 1 3 5 5 H 1.08008 * 119.99824 * 88.96521 * 4 2 1 6 6 C 1.37874 * 120.00069 * 268.97071 * 4 2 1 7 7 N 1.31512 * 120.00438 * 182.16975 * 6 4 2 8 8 Si 1.86806 * 119.99898 * 2.16575 * 6 4 2 9 9 H 1.48500 * 109.47234 * 265.77159 * 8 6 4 10 10 H 1.48498 * 109.47077 * 25.77072 * 8 6 4 11 11 H 1.48503 * 109.46972 * 145.77127 * 8 6 4 12 12 C 1.50701 * 109.46686 * 240.00819 * 2 1 3 13 13 C 1.37897 * 120.15372 * 293.98226 * 12 2 1 14 14 C 1.38736 * 120.44889 * 180.02562 * 13 12 2 15 15 C 1.36642 * 120.67066 * 359.97438 * 14 13 12 16 16 C 1.39700 * 119.88497 * 0.02562 * 15 14 13 17 17 N 1.35786 * 133.60393 * 180.02562 * 16 15 14 18 18 C 1.30121 * 109.64309 * 179.23322 * 17 16 15 19 19 N 1.36037 * 110.10278 * 0.66295 * 18 17 16 20 20 C 1.46503 * 126.34756 * 179.43323 * 19 18 17 21 21 C 1.38058 * 107.30573 * 359.43769 * 19 18 17 22 22 H 1.09005 * 109.47118 * 295.04121 * 1 2 3 23 23 H 1.08999 * 109.47679 * 55.04444 * 1 2 3 24 24 H 1.09001 * 109.47000 * 175.04857 * 1 2 3 25 25 H 0.96998 * 120.00724 * 179.97438 * 7 6 4 26 26 H 1.07990 * 119.77900 * 359.97438 * 13 12 2 27 27 H 1.08003 * 119.66358 * 180.02562 * 14 13 12 28 28 H 1.07997 * 120.05750 * 180.02562 * 15 14 13 29 29 H 1.07993 * 124.94404 * 180.09742 * 18 17 16 30 30 H 1.09007 * 109.46925 * 263.62459 * 20 19 18 31 31 H 1.08999 * 109.46985 * 23.61742 * 20 19 18 32 32 H 1.08988 * 109.47176 * 143.62060 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.1965 -1.7778 1.2083 6 6 2.2825 0.0018 2.3840 7 7 2.7614 -0.6110 3.4445 8 14 1.9412 1.8376 2.4407 9 1 3.1837 2.5824 2.1141 10 1 0.8868 2.1758 1.4512 11 1 1.4818 2.2138 3.8018 12 6 2.0323 -0.7103 -1.2306 13 6 1.8062 -2.0610 -1.3915 14 6 2.2662 -2.7211 -2.5218 15 6 2.9495 -2.0460 -3.4935 16 6 3.1903 -0.6772 -3.3520 17 7 3.8211 0.2472 -4.1211 18 6 3.7597 1.4118 -3.5440 19 7 3.0988 1.3122 -2.3591 20 6 2.8375 2.4027 -1.4163 21 6 2.7199 -0.0069 -2.2098 22 1 -0.3633 0.4350 0.9311 23 1 -0.3634 0.5888 -0.8422 24 1 -0.3633 -1.0238 -0.0887 25 1 2.9376 -0.1098 4.2560 26 1 1.2681 -2.6089 -0.6323 27 1 2.0817 -3.7792 -2.6350 28 1 3.3029 -2.5696 -4.3695 29 1 4.1808 2.3228 -3.9429 30 1 3.6007 2.4007 -0.6380 31 1 2.8617 3.3549 -1.9463 32 1 1.8561 2.2639 -0.9632 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261286171.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:31 Heat of formation + Delta-G solvation = 72.209704 kcal Electronic energy + Delta-G solvation = -15996.312772 eV Core-core repulsion = 13536.613249 eV Total energy + Delta-G solvation = -2459.699523 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.66723 -37.19144 -35.04160 -33.06358 -31.53838 -29.16754 -28.56306 -26.46463 -25.21658 -22.99184 -21.86874 -20.97470 -18.96243 -17.06112 -16.55977 -16.34806 -15.39980 -15.18808 -14.39448 -13.97055 -13.25445 -13.13274 -12.96916 -12.89366 -12.36881 -12.04563 -11.71639 -11.51762 -11.30398 -11.08637 -10.72592 -10.60471 -10.20555 -9.90694 -9.67350 -9.25707 -9.07588 -8.66504 -7.81785 -7.27652 -6.16997 -4.15471 1.57918 2.13016 3.04678 3.10978 3.20192 3.24239 3.29917 4.28362 4.49328 4.66565 4.92394 5.02820 5.17016 5.37371 5.55063 5.63588 5.69212 5.93658 6.01890 6.10448 6.26688 6.34337 6.47710 6.62518 6.72820 6.91246 7.00899 7.10770 7.25446 7.41128 7.50527 7.56205 7.66662 8.28507 8.42730 8.88768 9.43714 10.96206 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027414 B = 0.010801 C = 0.008804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.139970 B = 2591.690404 C = 3179.451320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.030 3.970 3 H 0.041 0.959 4 C -0.503 4.503 5 H 0.080 0.920 6 C 0.071 3.929 7 N -0.896 5.896 8 Si 0.864 3.136 9 H -0.277 1.277 10 H -0.260 1.260 11 H -0.285 1.285 12 C -0.017 4.017 13 C -0.105 4.105 14 C -0.120 4.120 15 C -0.097 4.097 16 C 0.040 3.960 17 N -0.505 5.505 18 C 0.243 3.757 19 N -0.490 5.490 20 C 0.070 3.930 21 C 0.045 3.955 22 H 0.048 0.952 23 H 0.020 0.980 24 H 0.050 0.950 25 H 0.264 0.736 26 H 0.130 0.870 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.206 0.794 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.419 4.824 -10.152 11.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.011 3.989 3 H 0.059 0.941 4 C -0.541 4.541 5 H 0.098 0.902 6 C -0.131 4.131 7 N -0.534 5.534 8 Si 0.691 3.309 9 H -0.203 1.203 10 H -0.184 1.184 11 H -0.211 1.211 12 C -0.020 4.020 13 C -0.125 4.125 14 C -0.140 4.140 15 C -0.117 4.117 16 C -0.077 4.077 17 N -0.225 5.225 18 C -0.043 4.043 19 N -0.180 5.180 20 C -0.072 4.072 21 C -0.063 4.063 22 H 0.067 0.933 23 H 0.039 0.961 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.148 0.852 27 H 0.138 0.862 28 H 0.136 0.864 29 H 0.223 0.777 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.001 4.776 -10.616 11.684 hybrid contribution -0.338 1.333 1.088 1.753 sum -1.339 6.109 -9.528 11.397 Atomic orbital electron populations 1.22062 0.97882 1.00435 0.98900 1.18507 0.92670 0.95971 0.91710 0.94113 1.20985 1.43661 0.96452 0.92992 0.90239 1.25019 0.94526 0.97887 0.95657 1.69880 1.44309 1.36241 1.02972 0.87081 0.79041 0.86731 0.78016 1.20348 1.18417 1.21123 1.19324 0.95571 0.93659 0.93421 1.20769 1.01228 0.93143 0.97371 1.20615 0.99587 0.99438 0.94381 1.19745 1.01494 0.90526 0.99930 1.18968 1.01709 0.94500 0.92540 1.70354 1.22723 0.98795 1.30627 1.25122 0.96587 0.98564 0.84008 1.45118 1.46664 1.07572 1.18650 1.22251 1.04136 0.87952 0.92908 1.18891 1.04241 0.84115 0.99049 0.93260 0.96092 0.93128 0.92579 0.85237 0.86174 0.86438 0.77742 0.90583 0.89795 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 8.73 37.16 0.32 -2.44 16 2 C 0.03 0.68 1.86 -92.92 -0.17 0.51 16 3 H 0.04 0.89 1.71 -51.93 -0.09 0.80 16 4 C -0.50 -13.46 8.57 -34.44 -0.30 -13.76 16 5 H 0.08 2.32 7.24 -52.48 -0.38 1.94 16 6 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 7 N -0.90 -26.57 13.96 55.43 0.77 -25.80 16 8 Si 0.86 19.96 26.41 -169.99 -4.49 15.47 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.26 -5.52 6.03 56.52 0.34 -5.18 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 C -0.02 -0.36 4.78 -104.54 -0.50 -0.86 16 13 C -0.11 -2.08 8.52 -39.52 -0.34 -2.42 16 14 C -0.12 -2.08 9.96 -39.97 -0.40 -2.48 16 15 C -0.10 -1.74 10.05 -39.61 -0.40 -2.14 16 16 C 0.04 0.80 7.23 -84.70 -0.61 0.19 16 17 N -0.50 -9.35 11.27 -12.05 -0.14 -9.49 16 18 C 0.24 3.74 12.49 -89.77 -1.12 2.62 16 19 N -0.49 -8.47 3.21 -123.18 -0.39 -8.86 16 20 C 0.07 1.01 9.87 59.85 0.59 1.60 16 21 C 0.04 0.91 6.78 -83.99 -0.57 0.34 16 22 H 0.05 1.02 6.99 -51.93 -0.36 0.66 16 23 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.99 7.62 -51.93 -0.40 0.60 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.13 2.52 7.43 -52.49 -0.39 2.13 16 27 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 28 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 29 H 0.21 2.04 8.06 -52.49 -0.42 1.62 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.08 0.84 8.13 -51.93 -0.42 0.42 16 32 H 0.09 1.47 5.98 -51.94 -0.31 1.16 16 LS Contribution 263.26 15.07 3.97 3.97 Total: -1.00 -31.73 263.26 -7.53 -39.25 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -3.66 Total: 2.44 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -3.59 Total: -16.98 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.24 Total: -44.15 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.49 Total: 15.47 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.73 -7.53 -39.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286171.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.462 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds