Wall clock time and date at job start Mon Mar 30 2020 03:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47250 * 2 1 4 4 C 1.50699 * 109.47161 * 119.99931 * 2 1 3 5 5 H 1.07998 * 119.99670 * 120.00344 * 4 2 1 6 6 C 1.37877 * 120.00133 * 299.72300 * 4 2 1 7 7 N 1.31505 * 119.99896 * 0.27965 * 6 4 2 8 8 Si 1.86798 * 119.99688 * 180.27187 * 6 4 2 9 9 H 1.48501 * 109.47041 * 90.00685 * 8 6 4 10 10 H 1.48501 * 109.47319 * 210.00067 * 8 6 4 11 11 H 1.48494 * 109.47628 * 330.00454 * 8 6 4 12 12 C 1.50695 * 109.47213 * 240.00344 * 2 1 3 13 13 C 1.36627 * 120.07364 * 293.15868 * 12 2 1 14 14 C 1.38921 * 120.81547 * 179.72092 * 13 12 2 15 15 C 1.36498 * 120.62828 * 0.54973 * 14 13 12 16 16 C 1.39900 * 119.63708 * 359.73256 * 15 14 13 17 17 C 1.45938 * 134.04251 * 179.97438 * 16 15 14 18 18 N 1.30238 * 107.79156 * 179.97438 * 17 16 15 19 19 N 1.39872 * 110.09204 * 0.02562 * 18 17 16 20 20 C 1.46499 * 125.45709 * 180.02562 * 19 18 17 21 21 C 1.37044 * 109.07972 * 359.97438 * 19 18 17 22 22 H 1.09005 * 109.46783 * 299.99969 * 1 2 3 23 23 H 1.09000 * 109.46935 * 59.99473 * 1 2 3 24 24 H 1.08999 * 109.47059 * 179.97438 * 1 2 3 25 25 H 0.97006 * 119.99761 * 180.02562 * 7 6 4 26 26 H 1.07999 * 119.58878 * 359.97101 * 13 12 2 27 27 H 1.07998 * 119.68651 * 180.28181 * 14 13 12 28 28 H 1.07999 * 120.18468 * 179.74660 * 15 14 13 29 29 H 1.08005 * 126.09720 * 359.97438 * 17 16 15 30 30 H 1.09004 * 109.46613 * 262.87436 * 20 19 18 31 31 H 1.08996 * 109.47578 * 22.87659 * 20 19 18 32 32 H 1.08994 * 109.47307 * 142.88112 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.7040 -0.2360 2.4827 7 7 0.9479 0.8332 2.6034 8 14 2.3330 -1.1123 4.0078 9 1 3.6425 -0.5356 4.4053 10 1 1.3592 -0.9388 5.1155 11 1 2.4975 -2.5588 3.7153 12 6 2.0323 -0.7103 -1.2305 13 6 1.8222 -2.0520 -1.3803 14 6 2.2735 -2.7211 -2.5109 15 6 2.9472 -2.0527 -3.4920 16 6 3.1800 -0.6796 -3.3592 17 6 3.8456 0.3213 -4.1868 18 7 3.7666 1.4650 -3.5688 19 7 3.0833 1.3108 -2.3582 20 6 2.8038 2.3812 -1.3978 21 6 2.7160 -0.0017 -2.2150 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7172 1.1671 3.4845 26 1 1.2951 -2.5982 -0.6120 27 1 2.0934 -3.7811 -2.6127 28 1 3.2985 -2.5809 -4.3661 29 1 4.3191 0.1449 -5.1414 30 1 3.5576 2.3687 -0.6105 31 1 2.8282 3.3436 -1.9089 32 1 1.8179 2.2276 -0.9592 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261286796.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:34 Heat of formation + Delta-G solvation = 85.249233 kcal Electronic energy + Delta-G solvation = -15853.293436 eV Core-core repulsion = 13394.159350 eV Total energy + Delta-G solvation = -2459.134087 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.74228 -36.95490 -34.71017 -32.62532 -30.93809 -29.25530 -28.39895 -25.80269 -25.16063 -22.82988 -21.58603 -20.77572 -19.28067 -16.52455 -16.24716 -15.92041 -14.91459 -14.72457 -14.42439 -13.86936 -13.39848 -12.98896 -12.51367 -12.47113 -12.13451 -11.61736 -11.32008 -11.21700 -11.07846 -10.88520 -10.70306 -10.40851 -10.30545 -10.09728 -9.41756 -9.30384 -8.91963 -8.39068 -7.97808 -7.08709 -6.07128 -4.12830 1.59920 2.16016 2.94417 3.03758 3.26423 3.33583 3.37314 4.35734 4.50803 4.95618 5.08160 5.23951 5.36677 5.64811 5.75141 5.79862 5.87875 6.02169 6.08503 6.26182 6.48296 6.62026 6.75205 6.87980 7.07769 7.12725 7.15993 7.26173 7.44400 7.64255 7.70458 7.85842 8.01615 8.15344 8.34037 8.88855 9.51669 10.98511 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029556 B = 0.008972 C = 0.007848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.127468 B = 3119.945056 C = 3567.119455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.060 3.940 3 H 0.045 0.955 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.892 3.108 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 C -0.050 4.050 13 C -0.080 4.080 14 C -0.153 4.153 15 C -0.076 4.076 16 C -0.188 4.188 17 C 0.055 3.945 18 N -0.265 5.265 19 N -0.401 5.401 20 C 0.105 3.895 21 C 0.126 3.874 22 H 0.086 0.914 23 H 0.006 0.994 24 H 0.030 0.970 25 H 0.261 0.739 26 H 0.129 0.871 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.188 0.812 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.105 -1.954 -9.039 9.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.042 3.958 3 H 0.063 0.937 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.720 3.280 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.053 4.053 13 C -0.101 4.101 14 C -0.172 4.172 15 C -0.097 4.097 16 C -0.195 4.195 17 C -0.141 4.141 18 N -0.078 5.078 19 N -0.189 5.189 20 C -0.036 4.036 21 C 0.012 3.988 22 H 0.105 0.895 23 H 0.025 0.975 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.146 0.854 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.205 0.795 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.289 -0.427 -8.813 9.115 hybrid contribution 0.194 -1.244 0.978 1.594 sum 2.483 -1.670 -7.835 8.387 Atomic orbital electron populations 1.21796 0.97496 0.99556 1.00058 1.18136 0.92970 0.96154 0.88544 0.93733 1.21159 1.31083 1.12368 0.89787 0.92349 1.24943 0.95010 0.95036 0.98923 1.69863 1.36731 1.22902 1.23486 0.86588 0.78589 0.80194 0.82656 1.20755 1.21206 1.19819 1.19512 0.96865 0.93763 0.95183 1.20637 0.99081 0.93466 0.96894 1.20640 1.01905 0.99479 0.95218 1.20046 0.99324 0.91417 0.98901 1.19850 1.08023 0.95128 0.96542 1.24846 1.00450 0.89117 0.99730 1.76404 1.13008 1.23758 0.94665 1.48049 1.48346 1.06231 1.16317 1.22061 1.03574 0.87993 0.89976 1.18853 0.98742 0.84803 0.96395 0.89545 0.97539 0.95062 0.92918 0.85355 0.86661 0.86662 0.79530 0.91080 0.90464 0.88103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.85 37.16 0.33 -2.75 16 2 C 0.06 1.44 2.25 -92.93 -0.21 1.23 16 3 H 0.04 1.10 4.03 -51.92 -0.21 0.89 16 4 C -0.51 -13.33 8.03 -34.44 -0.28 -13.61 16 5 H 0.06 1.55 7.40 -52.49 -0.39 1.17 16 6 C 0.06 1.65 5.31 -17.82 -0.09 1.55 16 7 N -0.89 -24.24 11.33 55.43 0.63 -23.61 16 8 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 C -0.05 -1.09 4.75 -104.83 -0.50 -1.59 16 13 C -0.08 -1.59 8.50 -39.91 -0.34 -1.93 16 14 C -0.15 -2.57 9.97 -39.96 -0.40 -2.96 16 15 C -0.08 -1.24 10.07 -39.59 -0.40 -1.63 16 16 C -0.19 -3.44 6.37 -105.20 -0.67 -4.11 16 17 C 0.06 0.89 12.28 -15.15 -0.19 0.71 16 18 N -0.26 -4.89 12.40 31.87 0.40 -4.50 16 19 N -0.40 -7.98 4.05 -65.47 -0.27 -8.24 16 20 C 0.10 1.86 10.01 59.85 0.60 2.46 16 21 C 0.13 2.65 6.80 -84.17 -0.57 2.07 16 22 H 0.09 2.20 6.08 -51.93 -0.32 1.88 16 23 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 24 H 0.03 0.70 7.80 -51.93 -0.40 0.29 16 25 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 26 H 0.13 2.54 7.72 -52.49 -0.41 2.14 16 27 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.19 2.13 8.06 -52.48 -0.42 1.70 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.10 1.89 5.92 -51.93 -0.31 1.59 16 LS Contribution 267.66 15.07 4.03 4.03 Total: -1.00 -29.18 267.66 -6.65 -35.83 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -3.70 Total: 1.29 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -2.71 Total: -20.56 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.76 Total: -36.35 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.18 -6.65 -35.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286796.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.078 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds