Wall clock time and date at job start Mon Mar 30 2020 03:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47250 * 2 1 4 4 C 1.50699 * 109.47161 * 119.99931 * 2 1 3 5 5 H 1.07998 * 119.99670 * 120.00344 * 4 2 1 6 6 C 1.37877 * 120.00133 * 299.72300 * 4 2 1 7 7 N 1.31505 * 119.99896 * 0.27965 * 6 4 2 8 8 Si 1.86798 * 119.99688 * 180.27187 * 6 4 2 9 9 H 1.48501 * 109.47041 * 90.00685 * 8 6 4 10 10 H 1.48501 * 109.47319 * 210.00067 * 8 6 4 11 11 H 1.48494 * 109.47628 * 330.00454 * 8 6 4 12 12 C 1.50695 * 109.47213 * 240.00344 * 2 1 3 13 13 C 1.36627 * 120.07364 * 293.15868 * 12 2 1 14 14 C 1.38921 * 120.81547 * 179.72092 * 13 12 2 15 15 C 1.36498 * 120.62828 * 0.54973 * 14 13 12 16 16 C 1.39900 * 119.63708 * 359.73256 * 15 14 13 17 17 C 1.45938 * 134.04251 * 179.97438 * 16 15 14 18 18 N 1.30238 * 107.79156 * 179.97438 * 17 16 15 19 19 N 1.39872 * 110.09204 * 0.02562 * 18 17 16 20 20 C 1.46499 * 125.45709 * 180.02562 * 19 18 17 21 21 C 1.37044 * 109.07972 * 359.97438 * 19 18 17 22 22 H 1.09005 * 109.46783 * 299.99969 * 1 2 3 23 23 H 1.09000 * 109.46935 * 59.99473 * 1 2 3 24 24 H 1.08999 * 109.47059 * 179.97438 * 1 2 3 25 25 H 0.97006 * 119.99761 * 180.02562 * 7 6 4 26 26 H 1.07999 * 119.58878 * 359.97101 * 13 12 2 27 27 H 1.07998 * 119.68651 * 180.28181 * 14 13 12 28 28 H 1.07999 * 120.18468 * 179.74660 * 15 14 13 29 29 H 1.08005 * 126.09720 * 359.97438 * 17 16 15 30 30 H 1.09004 * 109.46613 * 262.87436 * 20 19 18 31 31 H 1.08996 * 109.47578 * 22.87659 * 20 19 18 32 32 H 1.08994 * 109.47307 * 142.88112 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.7040 -0.2360 2.4827 7 7 0.9479 0.8332 2.6034 8 14 2.3330 -1.1123 4.0078 9 1 3.6425 -0.5356 4.4053 10 1 1.3592 -0.9388 5.1155 11 1 2.4975 -2.5588 3.7153 12 6 2.0323 -0.7103 -1.2305 13 6 1.8222 -2.0520 -1.3803 14 6 2.2735 -2.7211 -2.5109 15 6 2.9472 -2.0527 -3.4920 16 6 3.1800 -0.6796 -3.3592 17 6 3.8456 0.3213 -4.1868 18 7 3.7666 1.4650 -3.5688 19 7 3.0833 1.3108 -2.3582 20 6 2.8038 2.3812 -1.3978 21 6 2.7160 -0.0017 -2.2150 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7172 1.1671 3.4845 26 1 1.2951 -2.5982 -0.6120 27 1 2.0934 -3.7811 -2.6127 28 1 3.2985 -2.5809 -4.3661 29 1 4.3191 0.1449 -5.1414 30 1 3.5576 2.3687 -0.6105 31 1 2.8282 3.3436 -1.9089 32 1 1.8179 2.2276 -0.9592 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261286796.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:34 Heat of formation + Delta-G solvation = 68.952055 kcal Electronic energy + Delta-G solvation = -15854.000135 eV Core-core repulsion = 13394.159350 eV Total energy + Delta-G solvation = -2459.840786 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.13714 -38.43462 -36.37984 -34.27730 -32.62927 -30.66379 -29.97857 -27.29306 -27.13706 -24.37575 -22.96427 -22.38388 -20.78558 -18.30744 -17.79137 -17.43075 -16.56059 -16.33953 -15.87032 -15.35112 -14.92394 -14.60542 -14.06257 -13.97779 -13.63866 -13.33269 -13.04907 -12.89589 -12.71419 -12.63029 -12.33453 -12.12886 -11.94099 -11.76848 -11.10586 -10.92974 -10.70113 -10.38856 -9.42066 -8.54535 -8.08688 -6.21261 0.20507 0.75048 1.39765 1.41870 1.50989 1.57587 1.70164 2.42742 3.05035 3.19086 3.64526 3.81783 4.01143 4.25460 4.35786 4.46543 4.53299 4.62240 4.64641 4.83869 4.92660 4.97323 5.12658 5.23255 5.36411 5.51436 5.62939 5.72356 5.76721 6.00291 6.08551 6.09897 6.24290 6.39881 6.78184 6.85406 7.45381 8.94681 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029556 B = 0.008972 C = 0.007848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.127468 B = 3119.945056 C = 3567.119455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.059 3.941 3 H 0.032 0.968 4 C -0.518 4.518 5 H 0.049 0.951 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.948 3.052 9 H -0.281 1.281 10 H -0.282 1.282 11 H -0.269 1.269 12 C -0.086 4.086 13 C -0.086 4.086 14 C -0.157 4.157 15 C -0.056 4.056 16 C -0.201 4.201 17 C 0.078 3.922 18 N -0.287 5.287 19 N -0.420 5.420 20 C 0.110 3.890 21 C 0.097 3.903 22 H 0.062 0.938 23 H 0.015 0.985 24 H 0.030 0.970 25 H 0.261 0.739 26 H 0.118 0.882 27 H 0.151 0.849 28 H 0.164 0.836 29 H 0.240 0.760 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.210 -3.473 -11.079 12.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.041 3.959 3 H 0.050 0.950 4 C -0.556 4.556 5 H 0.067 0.933 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.775 3.225 9 H -0.207 1.207 10 H -0.208 1.208 11 H -0.193 1.193 12 C -0.090 4.090 13 C -0.107 4.107 14 C -0.176 4.176 15 C -0.076 4.076 16 C -0.209 4.209 17 C -0.119 4.119 18 N -0.099 5.099 19 N -0.209 5.209 20 C -0.031 4.031 21 C -0.017 4.017 22 H 0.081 0.919 23 H 0.034 0.966 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.136 0.864 27 H 0.169 0.831 28 H 0.181 0.819 29 H 0.256 0.744 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.393 -1.943 -10.852 11.535 hybrid contribution -0.124 -0.820 1.500 1.713 sum 3.269 -2.763 -9.353 10.286 Atomic orbital electron populations 1.21620 0.97637 0.99178 0.99221 1.18014 0.92912 0.95651 0.89331 0.95043 1.21405 1.30851 1.12172 0.91137 0.93294 1.25623 0.95331 0.95742 1.01434 1.69977 1.37573 1.23904 1.23920 0.85699 0.77970 0.79303 0.79577 1.20659 1.20777 1.19348 1.19339 0.99635 0.94770 0.95223 1.20753 0.99017 0.92883 0.98024 1.20977 1.01411 1.01171 0.94026 1.20579 0.96858 0.90477 0.99684 1.20322 1.08139 0.96415 0.96015 1.25700 0.98292 0.87432 1.00497 1.76394 1.13865 1.25143 0.94496 1.48210 1.49363 1.06175 1.17144 1.21945 1.02052 0.89087 0.90042 1.19116 0.99457 0.85737 0.97417 0.91949 0.96568 0.95053 0.92956 0.86429 0.83088 0.81860 0.74414 0.92203 0.87901 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.78 8.85 71.98 0.64 -5.14 16 2 C 0.06 2.95 2.25 -12.29 -0.03 2.92 16 3 H 0.03 1.65 4.03 -2.38 -0.01 1.64 16 4 C -0.52 -28.10 8.03 25.60 0.21 -27.90 16 5 H 0.05 2.68 7.40 -2.91 -0.02 2.65 16 6 C 0.02 0.95 5.31 84.66 0.45 1.39 16 7 N -0.91 -51.23 11.33 21.45 0.24 -50.99 16 8 Si 0.95 43.24 29.54 68.60 2.03 45.26 16 9 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 C -0.09 -3.82 4.75 -20.00 -0.10 -3.92 16 13 C -0.09 -3.38 8.50 22.06 0.19 -3.19 16 14 C -0.16 -4.77 9.97 22.03 0.22 -4.55 16 15 C -0.06 -1.56 10.07 22.27 0.22 -1.34 16 16 C -0.20 -6.80 6.37 -20.24 -0.13 -6.92 16 17 C 0.08 2.22 12.28 86.92 1.07 3.29 16 18 N -0.29 -10.05 12.40 -53.08 -0.66 -10.71 16 19 N -0.42 -16.71 4.05 -361.05 -1.46 -18.17 16 20 C 0.11 4.04 10.01 127.77 1.28 5.32 16 21 C 0.10 4.02 6.80 39.21 0.27 4.28 16 22 H 0.06 3.31 6.08 -2.38 -0.01 3.29 16 23 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.03 1.45 7.80 -2.39 -0.02 1.43 16 25 H 0.26 13.98 8.31 -92.70 -0.77 13.21 16 26 H 0.12 4.72 7.72 -2.91 -0.02 4.70 16 27 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 28 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 29 H 0.24 4.01 8.06 -2.91 -0.02 3.98 16 30 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.08 3.28 5.92 -2.39 -0.01 3.27 16 Total: -1.00 -64.39 267.66 5.55 -58.84 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.12 Total: 11.52 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: 4.28 Total: -35.75 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -1.88 Total: -79.87 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -64.39 5.55 -58.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286796.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.791 kcal (2) G-P(sol) polarization free energy of solvation -64.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds