Wall clock time and date at job start Mon Mar 30 2020 02:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46917 * 2 1 4 4 C 1.50695 * 109.47342 * 120.00344 * 2 1 3 5 5 N 1.30575 * 125.62544 * 300.02384 * 4 2 1 6 6 N 1.40017 * 109.92226 * 180.02562 * 5 4 2 7 7 C 1.36365 * 131.89302 * 180.02562 * 6 5 4 8 8 C 1.35399 * 120.80991 * 179.97438 * 7 6 5 9 9 C 1.39994 * 120.29368 * 359.97438 * 8 7 6 10 10 C 1.37960 * 119.27835 * 0.02562 * 9 8 7 11 11 C 1.36938 * 107.99808 * 0.02562 * 6 5 4 12 12 C 1.41335 * 125.62775 * 119.72359 * 4 2 1 13 13 C 1.40662 * 126.71573 * 359.97423 * 12 4 2 14 14 H 1.07996 * 119.99837 * 321.02989 * 13 12 4 15 15 C 1.39651 * 119.99891 * 141.03293 * 13 12 4 16 16 N 1.31138 * 120.00006 * 156.05150 * 15 13 12 17 17 Si 1.86799 * 119.99783 * 336.04536 * 15 13 12 18 18 H 1.48505 * 109.47170 * 95.40643 * 17 15 13 19 19 H 1.48502 * 109.47090 * 215.40330 * 17 15 13 20 20 H 1.48496 * 109.47387 * 335.40781 * 17 15 13 21 21 H 1.09003 * 109.47397 * 59.99883 * 1 2 3 22 22 H 1.09004 * 109.47103 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47205 * 299.99645 * 1 2 3 24 24 H 1.09004 * 109.47018 * 240.00742 * 2 1 3 25 25 H 1.08998 * 109.47467 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47758 * 300.00522 * 3 2 1 27 27 H 1.09004 * 109.46670 * 60.00529 * 3 2 1 28 28 H 1.08000 * 119.60172 * 359.95375 * 7 6 5 29 29 H 1.07994 * 119.85222 * 180.02562 * 8 7 6 30 30 H 1.08006 * 120.36018 * 180.02562 * 9 8 7 31 31 H 1.07998 * 120.41637 * 180.02562 * 10 9 8 32 32 H 0.97001 * 119.99600 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7852 -0.3617 2.4642 6 7 2.4138 -1.2494 3.3459 7 6 2.4527 -1.3054 4.7078 8 6 3.1437 -2.2817 5.3423 9 6 3.8313 -3.2533 4.6054 10 6 3.7973 -3.2042 3.2271 11 6 3.0784 -2.1865 2.6006 12 6 2.8438 -1.8676 1.2392 13 6 3.3277 -2.5640 0.1170 14 1 2.6976 -2.6948 -0.7503 15 6 4.6229 -3.0862 0.1244 16 7 4.9274 -4.0955 -0.6556 17 14 5.9216 -2.3469 1.2451 18 1 5.9897 -3.1277 2.5065 19 1 7.2419 -2.3868 0.5665 20 1 5.5659 -0.9385 1.5535 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5137 -0.8901 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9565 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 1.9263 -0.5616 5.2876 29 1 3.1637 -2.3115 6.4217 30 1 4.3825 -4.0328 5.1105 31 1 4.3208 -3.9446 2.6405 32 1 5.8271 -4.4579 -0.6507 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261291410.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:02 Heat of formation + Delta-G solvation = 88.243863 kcal Electronic energy + Delta-G solvation = -15976.835272 eV Core-core repulsion = 13517.831042 eV Total energy + Delta-G solvation = -2459.004230 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.64874 -36.69521 -34.05595 -33.67812 -31.50834 -29.15146 -28.65535 -26.60578 -24.49927 -23.00948 -22.31593 -20.29550 -18.70277 -17.41498 -16.01837 -15.50714 -14.95651 -14.74610 -14.31157 -13.86377 -13.75084 -13.07052 -12.80995 -12.62232 -12.00969 -11.72608 -11.49371 -11.31764 -11.07553 -10.85031 -10.54268 -10.43487 -10.38481 -10.18566 -9.87731 -9.63095 -9.20595 -8.64154 -8.12026 -6.77684 -6.64003 -4.08547 1.74780 2.13748 3.06490 3.21802 3.34803 3.43058 3.78381 4.09719 4.31306 5.03686 5.23818 5.41085 5.53436 5.67540 5.80364 5.81156 5.98560 6.09993 6.11815 6.23270 6.33535 6.39362 6.50115 6.63461 6.74825 6.80462 6.92798 6.96515 7.18084 7.31858 7.49685 7.64623 8.17039 8.36383 8.62342 8.83690 8.97006 10.27369 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.018521 B = 0.015164 C = 0.009636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.455358 B = 1846.080621 C = 2905.021987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.002 4.002 3 C -0.137 4.137 4 C 0.041 3.959 5 N -0.311 5.311 6 N -0.292 5.292 7 C 0.084 3.916 8 C -0.166 4.166 9 C -0.188 4.188 10 C -0.044 4.044 11 C -0.044 4.044 12 C -0.015 4.015 13 C -0.432 4.432 14 H 0.092 0.908 15 C 0.090 3.910 16 N -0.822 5.822 17 Si 0.875 3.125 18 H -0.253 1.253 19 H -0.287 1.287 20 H -0.259 1.259 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.093 0.907 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.144 0.856 29 H 0.131 0.869 30 H 0.117 0.883 31 H 0.132 0.868 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.274 4.411 5.045 7.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.023 4.023 3 C -0.195 4.195 4 C -0.119 4.119 5 N -0.135 5.135 6 N -0.067 5.067 7 C -0.039 4.039 8 C -0.189 4.189 9 C -0.211 4.211 10 C -0.064 4.064 11 C -0.156 4.156 12 C -0.026 4.026 13 C -0.465 4.465 14 H 0.110 0.890 15 C -0.125 4.125 16 N -0.450 5.450 17 Si 0.700 3.300 18 H -0.179 1.179 19 H -0.214 1.214 20 H -0.183 1.183 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.111 0.889 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.161 0.839 29 H 0.149 0.851 30 H 0.135 0.865 31 H 0.149 0.851 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.755 5.121 5.554 8.041 hybrid contribution 1.240 -0.429 0.166 1.323 sum -1.515 4.691 5.719 7.551 Atomic orbital electron populations 1.21791 0.95161 1.01621 1.01022 1.19398 0.94661 0.94692 0.93551 1.21768 1.01214 0.95552 1.00990 1.22338 1.01983 0.95477 0.92079 1.76665 1.21821 1.15164 0.99878 1.45102 1.35872 1.21748 1.03991 1.20953 1.01909 1.00418 0.80646 1.20324 1.02442 0.96851 0.99300 1.20816 1.05448 1.01532 0.93267 1.20735 0.95285 0.96100 0.94241 1.19248 1.07348 0.96711 0.92258 1.17862 1.00001 0.94321 0.90395 1.18285 0.98522 1.29219 1.00438 0.88979 1.25800 0.99351 0.92698 0.94685 1.69882 1.21607 1.17866 1.35620 0.86947 0.79696 0.82418 0.80902 1.17860 1.21368 1.18265 0.92975 0.92828 0.92755 0.88927 0.92773 0.92937 0.92784 0.83888 0.85135 0.86523 0.85074 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.18 37.16 0.34 -1.95 16 2 C 0.00 -0.05 3.29 -91.77 -0.30 -0.35 16 3 C -0.14 -2.32 9.18 37.16 0.34 -1.98 16 4 C 0.04 0.96 5.74 -81.95 -0.47 0.49 16 5 N -0.31 -7.27 12.55 33.92 0.43 -6.85 16 6 N -0.29 -6.82 3.87 -10.31 -0.04 -6.86 16 7 C 0.08 1.62 11.18 -16.55 -0.19 1.43 16 8 C -0.17 -2.89 9.98 -39.94 -0.40 -3.29 16 9 C -0.19 -3.63 10.15 -39.03 -0.40 -4.02 16 10 C -0.04 -1.00 7.05 -39.23 -0.28 -1.28 16 11 C -0.04 -1.10 5.58 -83.78 -0.47 -1.57 16 12 C -0.02 -0.40 4.89 -106.45 -0.52 -0.92 16 13 C -0.43 -11.63 9.15 -38.14 -0.35 -11.98 16 14 H 0.09 2.56 7.91 -52.49 -0.41 2.15 16 15 C 0.09 2.38 5.00 -17.32 -0.09 2.29 16 16 N -0.82 -22.10 13.94 55.54 0.77 -21.32 16 17 Si 0.87 20.90 24.34 -169.99 -4.14 16.77 16 18 H -0.25 -5.75 5.46 56.52 0.31 -5.44 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.26 -6.61 7.11 56.52 0.40 -6.20 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.09 1.82 7.41 -51.93 -0.38 1.44 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.14 2.25 8.06 -52.49 -0.42 1.82 16 29 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.12 1.91 8.06 -52.48 -0.42 1.48 16 31 H 0.13 3.04 5.75 -52.49 -0.30 2.74 16 32 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 LS Contribution 267.14 15.07 4.03 4.03 Total: -1.00 -29.30 267.14 -5.86 -35.15 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -4.13 Total: 2.20 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -2.77 Total: -23.11 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 1.16 Total: -35.03 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.14 Total: 16.77 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.30 -5.86 -35.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261291410.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.398 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds