Wall clock time and date at job start Mon Mar 30 2020 02:50:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53001 * 109.46917 * 2 1
4 4 C 1.50695 * 109.47342 * 120.00344 * 2 1 3
5 5 N 1.30575 * 125.62544 * 300.02384 * 4 2 1
6 6 N 1.40017 * 109.92226 * 180.02562 * 5 4 2
7 7 C 1.36365 * 131.89302 * 180.02562 * 6 5 4
8 8 C 1.35399 * 120.80991 * 179.97438 * 7 6 5
9 9 C 1.39994 * 120.29368 * 359.97438 * 8 7 6
10 10 C 1.37960 * 119.27835 * 0.02562 * 9 8 7
11 11 C 1.36938 * 107.99808 * 0.02562 * 6 5 4
12 12 C 1.41335 * 125.62775 * 119.72359 * 4 2 1
13 13 C 1.40662 * 126.71573 * 359.97423 * 12 4 2
14 14 H 1.07996 * 119.99837 * 321.02989 * 13 12 4
15 15 C 1.39651 * 119.99891 * 141.03293 * 13 12 4
16 16 N 1.31138 * 120.00006 * 156.05150 * 15 13 12
17 17 Si 1.86799 * 119.99783 * 336.04536 * 15 13 12
18 18 H 1.48505 * 109.47170 * 95.40643 * 17 15 13
19 19 H 1.48502 * 109.47090 * 215.40330 * 17 15 13
20 20 H 1.48496 * 109.47387 * 335.40781 * 17 15 13
21 21 H 1.09003 * 109.47397 * 59.99883 * 1 2 3
22 22 H 1.09004 * 109.47103 * 179.97438 * 1 2 3
23 23 H 1.08998 * 109.47205 * 299.99645 * 1 2 3
24 24 H 1.09004 * 109.47018 * 240.00742 * 2 1 3
25 25 H 1.08998 * 109.47467 * 179.97438 * 3 2 1
26 26 H 1.08996 * 109.47758 * 300.00522 * 3 2 1
27 27 H 1.09004 * 109.46670 * 60.00529 * 3 2 1
28 28 H 1.08000 * 119.60172 * 359.95375 * 7 6 5
29 29 H 1.07994 * 119.85222 * 180.02562 * 8 7 6
30 30 H 1.08006 * 120.36018 * 180.02562 * 9 8 7
31 31 H 1.07998 * 120.41637 * 180.02562 * 10 9 8
32 32 H 0.97001 * 119.99600 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0324 -0.7104 1.2304
5 7 1.7852 -0.3617 2.4642
6 7 2.4138 -1.2494 3.3459
7 6 2.4527 -1.3054 4.7078
8 6 3.1437 -2.2817 5.3423
9 6 3.8313 -3.2533 4.6054
10 6 3.7973 -3.2042 3.2271
11 6 3.0784 -2.1865 2.6006
12 6 2.8438 -1.8676 1.2392
13 6 3.3277 -2.5640 0.1170
14 1 2.6976 -2.6948 -0.7503
15 6 4.6229 -3.0862 0.1244
16 7 4.9274 -4.0955 -0.6556
17 14 5.9216 -2.3469 1.2451
18 1 5.9897 -3.1277 2.5065
19 1 7.2419 -2.3868 0.5665
20 1 5.5659 -0.9385 1.5535
21 1 -0.3634 0.5139 -0.8900
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5138 0.8900
24 1 1.8933 -0.5137 -0.8901
25 1 3.1299 1.4426 0.0005
26 1 1.6766 1.9565 -0.8899
27 1 1.6766 1.9563 0.8901
28 1 1.9263 -0.5616 5.2876
29 1 3.1637 -2.3115 6.4217
30 1 4.3825 -4.0328 5.1105
31 1 4.3208 -3.9446 2.6405
32 1 5.8271 -4.4579 -0.6507
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261291410.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:50:02
Heat of formation + Delta-G solvation = 70.201426 kcal
Electronic energy + Delta-G solvation = -15977.617651 eV
Core-core repulsion = 13517.831042 eV
Total energy + Delta-G solvation = -2459.786609 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-42.41882 -38.32538 -35.61490 -35.51475 -33.27972 -30.85762 -30.39673 -27.95831
-26.34714 -24.61869 -23.95161 -22.04717 -20.32859 -19.30493 -17.79362 -17.13477
-16.59866 -16.45399 -16.09760 -15.45322 -15.32768 -14.80823 -14.47360 -14.06840
-13.80208 -13.22413 -13.04884 -12.93492 -12.84541 -12.37316 -12.22412 -12.03580
-11.98473 -11.81875 -11.63839 -11.44435 -10.97796 -10.48874 -9.81841 -8.70088
-8.42953 -6.04820 0.08785 0.45798 1.18359 1.27270 1.41397 1.77052
1.97007 2.19095 2.61319 3.12820 3.64676 3.86736 4.09761 4.19535
4.33439 4.36282 4.39188 4.52829 4.72713 4.83206 4.84334 4.98661
5.06798 5.10218 5.14730 5.29116 5.42056 5.42573 5.49065 5.59229
5.83041 5.85398 6.29381 6.47328 6.74301 6.97856 7.10914 8.41619
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.018521 B = 0.015164 C = 0.009636
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1511.455358 B = 1846.080621 C = 2905.021987
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.010 4.010
3 C -0.128 4.128
4 C 0.041 3.959
5 N -0.330 5.330
6 N -0.296 5.296
7 C 0.075 3.925
8 C -0.157 4.157
9 C -0.135 4.135
10 C -0.108 4.108
11 C -0.031 4.031
12 C -0.074 4.074
13 C -0.457 4.457
14 H 0.057 0.943
15 C 0.059 3.941
16 N -0.870 5.870
17 Si 0.923 3.077
18 H -0.230 1.230
19 H -0.279 1.279
20 H -0.288 1.288
21 H 0.085 0.915
22 H 0.038 0.962
23 H 0.055 0.945
24 H 0.076 0.924
25 H 0.035 0.965
26 H 0.086 0.914
27 H 0.055 0.945
28 H 0.183 0.817
29 H 0.191 0.809
30 H 0.159 0.841
31 H 0.119 0.881
32 H 0.284 0.716
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.490 5.333 8.907 10.676
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.031 4.031
3 C -0.186 4.186
4 C -0.116 4.116
5 N -0.156 5.156
6 N -0.069 5.069
7 C -0.049 4.049
8 C -0.179 4.179
9 C -0.157 4.157
10 C -0.128 4.128
11 C -0.145 4.145
12 C -0.085 4.085
13 C -0.491 4.491
14 H 0.075 0.925
15 C -0.151 4.151
16 N -0.501 5.501
17 Si 0.747 3.253
18 H -0.154 1.154
19 H -0.205 1.205
20 H -0.213 1.213
21 H 0.104 0.896
22 H 0.057 0.943
23 H 0.074 0.926
24 H 0.094 0.906
25 H 0.055 0.945
26 H 0.105 0.895
27 H 0.074 0.926
28 H 0.201 0.799
29 H 0.208 0.792
30 H 0.177 0.823
31 H 0.137 0.863
32 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -2.985 6.054 9.427 11.595
hybrid contribution 1.178 -0.691 -0.590 1.488
sum -1.807 5.363 8.838 10.495
Atomic orbital electron populations
1.21703 0.92872 1.01200 1.02720 1.19576 0.96565 0.95615 0.91354
1.21698 1.00048 0.94058 1.02763 1.22887 1.00577 0.94809 0.93374
1.76663 1.23403 1.15769 0.99728 1.45666 1.34746 1.20821 1.05639
1.22000 1.01878 1.01869 0.79141 1.21075 0.99983 0.94711 1.02099
1.21578 1.01368 1.00951 0.91830 1.20836 0.98788 0.97060 0.96127
1.19613 1.05802 0.96649 0.92476 1.17996 1.03347 0.96314 0.90842
1.18106 0.98922 1.31756 1.00349 0.92494 1.26214 1.00170 0.92852
0.95868 1.69916 1.22224 1.19622 1.38339 0.86252 0.78115 0.80079
0.80807 1.15418 1.20520 1.21331 0.89606 0.94320 0.92574 0.90609
0.94528 0.89471 0.92574 0.79944 0.79193 0.82344 0.86269 0.90624
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.17 9.18 71.98 0.66 -3.51 16
2 C -0.01 -0.41 3.29 -11.54 -0.04 -0.45 16
3 C -0.13 -4.27 9.18 71.98 0.66 -3.61 16
4 C 0.04 1.99 5.74 43.51 0.25 2.24 16
5 N -0.33 -15.31 12.55 -46.59 -0.58 -15.89 16
6 N -0.30 -13.26 3.87 -186.52 -0.72 -13.99 16
7 C 0.07 2.49 11.18 83.33 0.93 3.42 16
8 C -0.16 -4.37 9.98 22.04 0.22 -4.15 16
9 C -0.13 -4.45 10.15 22.63 0.23 -4.22 16
10 C -0.11 -4.77 7.05 22.50 0.16 -4.61 16
11 C -0.03 -1.54 5.58 39.52 0.22 -1.32 16
12 C -0.07 -4.01 4.89 -21.05 -0.10 -4.11 16
13 C -0.46 -26.57 9.15 23.20 0.21 -26.36 16
14 H 0.06 3.53 7.91 -2.91 -0.02 3.50 16
15 C 0.06 3.30 5.00 85.14 0.43 3.73 16
16 N -0.87 -49.71 13.94 21.79 0.30 -49.40 16
17 Si 0.92 44.56 24.34 68.60 1.67 46.23 16
18 H -0.23 -10.07 5.46 99.48 0.54 -9.52 16
19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16
20 H -0.29 -15.04 7.11 99.48 0.71 -14.33 16
21 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16
22 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16
23 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16
24 H 0.08 3.21 7.41 -2.38 -0.02 3.19 16
25 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16
26 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16
27 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16
28 H 0.18 4.63 8.06 -2.91 -0.02 4.60 16
29 H 0.19 3.22 8.06 -2.91 -0.02 3.20 16
30 H 0.16 4.00 8.06 -2.91 -0.02 3.98 16
31 H 0.12 5.51 5.75 -2.91 -0.02 5.50 16
32 H 0.28 14.77 8.30 -92.71 -0.77 14.00 16
Total: -1.00 -68.77 267.14 5.44 -63.33
By element:
Atomic # 1 Polarization: 11.73 SS G_CDS: 0.94 Total: 12.67 kcal
Atomic # 6 Polarization: -46.78 SS G_CDS: 3.83 Total: -42.95 kcal
Atomic # 7 Polarization: -78.28 SS G_CDS: -1.00 Total: -79.28 kcal
Atomic # 14 Polarization: 44.56 SS G_CDS: 1.67 Total: 46.23 kcal
Total: -68.77 5.44 -63.33 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261291410.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 133.533 kcal
(2) G-P(sol) polarization free energy of solvation -68.771 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.762 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.439 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.332 kcal
(6) G-S(sol) free energy of system = (1) + (5) 70.201 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds