Wall clock time and date at job start Mon Mar 30 2020 02:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46917 * 2 1 4 4 C 1.50695 * 109.47342 * 120.00344 * 2 1 3 5 5 N 1.30575 * 125.62544 * 300.02384 * 4 2 1 6 6 N 1.40017 * 109.92226 * 180.02562 * 5 4 2 7 7 C 1.36365 * 131.89302 * 180.02562 * 6 5 4 8 8 C 1.35399 * 120.80991 * 179.97438 * 7 6 5 9 9 C 1.39994 * 120.29368 * 359.97438 * 8 7 6 10 10 C 1.37960 * 119.27835 * 0.02562 * 9 8 7 11 11 C 1.36938 * 107.99808 * 0.02562 * 6 5 4 12 12 C 1.41335 * 125.62775 * 119.72359 * 4 2 1 13 13 C 1.40662 * 126.71573 * 359.97423 * 12 4 2 14 14 H 1.07996 * 119.99837 * 321.02989 * 13 12 4 15 15 C 1.39651 * 119.99891 * 141.03293 * 13 12 4 16 16 N 1.31138 * 120.00006 * 156.05150 * 15 13 12 17 17 Si 1.86799 * 119.99783 * 336.04536 * 15 13 12 18 18 H 1.48505 * 109.47170 * 95.40643 * 17 15 13 19 19 H 1.48502 * 109.47090 * 215.40330 * 17 15 13 20 20 H 1.48496 * 109.47387 * 335.40781 * 17 15 13 21 21 H 1.09003 * 109.47397 * 59.99883 * 1 2 3 22 22 H 1.09004 * 109.47103 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47205 * 299.99645 * 1 2 3 24 24 H 1.09004 * 109.47018 * 240.00742 * 2 1 3 25 25 H 1.08998 * 109.47467 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47758 * 300.00522 * 3 2 1 27 27 H 1.09004 * 109.46670 * 60.00529 * 3 2 1 28 28 H 1.08000 * 119.60172 * 359.95375 * 7 6 5 29 29 H 1.07994 * 119.85222 * 180.02562 * 8 7 6 30 30 H 1.08006 * 120.36018 * 180.02562 * 9 8 7 31 31 H 1.07998 * 120.41637 * 180.02562 * 10 9 8 32 32 H 0.97001 * 119.99600 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7852 -0.3617 2.4642 6 7 2.4138 -1.2494 3.3459 7 6 2.4527 -1.3054 4.7078 8 6 3.1437 -2.2817 5.3423 9 6 3.8313 -3.2533 4.6054 10 6 3.7973 -3.2042 3.2271 11 6 3.0784 -2.1865 2.6006 12 6 2.8438 -1.8676 1.2392 13 6 3.3277 -2.5640 0.1170 14 1 2.6976 -2.6948 -0.7503 15 6 4.6229 -3.0862 0.1244 16 7 4.9274 -4.0955 -0.6556 17 14 5.9216 -2.3469 1.2451 18 1 5.9897 -3.1277 2.5065 19 1 7.2419 -2.3868 0.5665 20 1 5.5659 -0.9385 1.5535 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5137 -0.8901 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9565 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 1.9263 -0.5616 5.2876 29 1 3.1637 -2.3115 6.4217 30 1 4.3825 -4.0328 5.1105 31 1 4.3208 -3.9446 2.6405 32 1 5.8271 -4.4579 -0.6507 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261291410.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:02 Heat of formation + Delta-G solvation = 70.201426 kcal Electronic energy + Delta-G solvation = -15977.617651 eV Core-core repulsion = 13517.831042 eV Total energy + Delta-G solvation = -2459.786609 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.41882 -38.32538 -35.61490 -35.51475 -33.27972 -30.85762 -30.39673 -27.95831 -26.34714 -24.61869 -23.95161 -22.04717 -20.32859 -19.30493 -17.79362 -17.13477 -16.59866 -16.45399 -16.09760 -15.45322 -15.32768 -14.80823 -14.47360 -14.06840 -13.80208 -13.22413 -13.04884 -12.93492 -12.84541 -12.37316 -12.22412 -12.03580 -11.98473 -11.81875 -11.63839 -11.44435 -10.97796 -10.48874 -9.81841 -8.70088 -8.42953 -6.04820 0.08785 0.45798 1.18359 1.27270 1.41397 1.77052 1.97007 2.19095 2.61319 3.12820 3.64676 3.86736 4.09761 4.19535 4.33439 4.36282 4.39188 4.52829 4.72713 4.83206 4.84334 4.98661 5.06798 5.10218 5.14730 5.29116 5.42056 5.42573 5.49065 5.59229 5.83041 5.85398 6.29381 6.47328 6.74301 6.97856 7.10914 8.41619 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.018521 B = 0.015164 C = 0.009636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.455358 B = 1846.080621 C = 2905.021987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.010 4.010 3 C -0.128 4.128 4 C 0.041 3.959 5 N -0.330 5.330 6 N -0.296 5.296 7 C 0.075 3.925 8 C -0.157 4.157 9 C -0.135 4.135 10 C -0.108 4.108 11 C -0.031 4.031 12 C -0.074 4.074 13 C -0.457 4.457 14 H 0.057 0.943 15 C 0.059 3.941 16 N -0.870 5.870 17 Si 0.923 3.077 18 H -0.230 1.230 19 H -0.279 1.279 20 H -0.288 1.288 21 H 0.085 0.915 22 H 0.038 0.962 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.035 0.965 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.183 0.817 29 H 0.191 0.809 30 H 0.159 0.841 31 H 0.119 0.881 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.490 5.333 8.907 10.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.031 4.031 3 C -0.186 4.186 4 C -0.116 4.116 5 N -0.156 5.156 6 N -0.069 5.069 7 C -0.049 4.049 8 C -0.179 4.179 9 C -0.157 4.157 10 C -0.128 4.128 11 C -0.145 4.145 12 C -0.085 4.085 13 C -0.491 4.491 14 H 0.075 0.925 15 C -0.151 4.151 16 N -0.501 5.501 17 Si 0.747 3.253 18 H -0.154 1.154 19 H -0.205 1.205 20 H -0.213 1.213 21 H 0.104 0.896 22 H 0.057 0.943 23 H 0.074 0.926 24 H 0.094 0.906 25 H 0.055 0.945 26 H 0.105 0.895 27 H 0.074 0.926 28 H 0.201 0.799 29 H 0.208 0.792 30 H 0.177 0.823 31 H 0.137 0.863 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.985 6.054 9.427 11.595 hybrid contribution 1.178 -0.691 -0.590 1.488 sum -1.807 5.363 8.838 10.495 Atomic orbital electron populations 1.21703 0.92872 1.01200 1.02720 1.19576 0.96565 0.95615 0.91354 1.21698 1.00048 0.94058 1.02763 1.22887 1.00577 0.94809 0.93374 1.76663 1.23403 1.15769 0.99728 1.45666 1.34746 1.20821 1.05639 1.22000 1.01878 1.01869 0.79141 1.21075 0.99983 0.94711 1.02099 1.21578 1.01368 1.00951 0.91830 1.20836 0.98788 0.97060 0.96127 1.19613 1.05802 0.96649 0.92476 1.17996 1.03347 0.96314 0.90842 1.18106 0.98922 1.31756 1.00349 0.92494 1.26214 1.00170 0.92852 0.95868 1.69916 1.22224 1.19622 1.38339 0.86252 0.78115 0.80079 0.80807 1.15418 1.20520 1.21331 0.89606 0.94320 0.92574 0.90609 0.94528 0.89471 0.92574 0.79944 0.79193 0.82344 0.86269 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 9.18 71.98 0.66 -3.51 16 2 C -0.01 -0.41 3.29 -11.54 -0.04 -0.45 16 3 C -0.13 -4.27 9.18 71.98 0.66 -3.61 16 4 C 0.04 1.99 5.74 43.51 0.25 2.24 16 5 N -0.33 -15.31 12.55 -46.59 -0.58 -15.89 16 6 N -0.30 -13.26 3.87 -186.52 -0.72 -13.99 16 7 C 0.07 2.49 11.18 83.33 0.93 3.42 16 8 C -0.16 -4.37 9.98 22.04 0.22 -4.15 16 9 C -0.13 -4.45 10.15 22.63 0.23 -4.22 16 10 C -0.11 -4.77 7.05 22.50 0.16 -4.61 16 11 C -0.03 -1.54 5.58 39.52 0.22 -1.32 16 12 C -0.07 -4.01 4.89 -21.05 -0.10 -4.11 16 13 C -0.46 -26.57 9.15 23.20 0.21 -26.36 16 14 H 0.06 3.53 7.91 -2.91 -0.02 3.50 16 15 C 0.06 3.30 5.00 85.14 0.43 3.73 16 16 N -0.87 -49.71 13.94 21.79 0.30 -49.40 16 17 Si 0.92 44.56 24.34 68.60 1.67 46.23 16 18 H -0.23 -10.07 5.46 99.48 0.54 -9.52 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.29 -15.04 7.11 99.48 0.71 -14.33 16 21 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 22 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 23 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.08 3.21 7.41 -2.38 -0.02 3.19 16 25 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.18 4.63 8.06 -2.91 -0.02 4.60 16 29 H 0.19 3.22 8.06 -2.91 -0.02 3.20 16 30 H 0.16 4.00 8.06 -2.91 -0.02 3.98 16 31 H 0.12 5.51 5.75 -2.91 -0.02 5.50 16 32 H 0.28 14.77 8.30 -92.71 -0.77 14.00 16 Total: -1.00 -68.77 267.14 5.44 -63.33 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.94 Total: 12.67 kcal Atomic # 6 Polarization: -46.78 SS G_CDS: 3.83 Total: -42.95 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -1.00 Total: -79.28 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.67 Total: 46.23 kcal Total: -68.77 5.44 -63.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261291410.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.533 kcal (2) G-P(sol) polarization free energy of solvation -68.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds