Wall clock time and date at job start Mon Mar 30 2020 03:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36834 * 125.05939 * 2 1 4 4 C 1.34237 * 109.93018 * 180.02562 * 3 2 1 5 5 C 1.46486 * 106.99624 * 359.97438 * 4 3 2 6 6 C 1.39632 * 134.02860 * 180.02562 * 5 4 3 7 7 C 1.36628 * 119.76124 * 179.97438 * 6 5 4 8 8 C 1.38835 * 120.52963 * 0.02717 * 7 6 5 9 9 C 1.50701 * 119.66444 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.46309 * 160.00010 * 9 8 7 11 11 N 1.46893 * 109.47329 * 39.99623 * 9 8 7 12 12 C 1.50699 * 109.46833 * 279.99631 * 9 8 7 13 13 H 1.08002 * 120.00516 * 359.97438 * 12 9 8 14 14 C 1.37884 * 119.99783 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99707 * 0.02562 * 14 12 9 16 16 Si 1.86796 * 119.99956 * 180.27458 * 14 12 9 17 17 H 1.48497 * 109.47172 * 179.72730 * 16 14 12 18 18 H 1.48506 * 109.47132 * 299.72429 * 16 14 12 19 19 H 1.48501 * 109.47173 * 59.72550 * 16 14 12 20 20 C 1.37744 * 120.66153 * 0.22731 * 8 7 6 21 21 C 1.37685 * 125.06766 * 180.02562 * 2 1 3 22 22 H 1.09001 * 109.47007 * 90.03025 * 1 2 3 23 23 H 1.09003 * 109.47021 * 210.02682 * 1 2 3 24 24 H 1.08999 * 109.47432 * 330.02862 * 1 2 3 25 25 H 1.08001 * 125.03494 * 0.03455 * 3 2 1 26 26 H 1.08001 * 126.50122 * 179.97438 * 4 3 2 27 27 H 1.07995 * 120.11718 * 359.97438 * 6 5 4 28 28 H 1.08003 * 119.73133 * 179.97438 * 7 6 5 29 29 H 1.00899 * 111.00326 * 299.99840 * 11 9 8 30 30 H 1.00907 * 110.99912 * 63.95460 * 11 9 8 31 31 H 0.97005 * 119.99656 * 179.97438 * 15 14 12 32 32 H 1.08005 * 120.10517 * 179.72999 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1201 0.0000 4 6 3.5468 0.7697 -0.0006 5 6 3.5946 -0.6944 -0.0003 6 6 4.6296 -1.6316 -0.0002 7 6 4.3362 -2.9660 0.0005 8 6 3.0168 -3.3980 0.0006 9 6 2.7154 -4.8746 0.0009 10 1 1.6965 -5.0373 0.3524 11 7 3.6570 -5.5664 0.8911 12 6 2.8566 -5.4163 -1.3983 13 1 3.1362 -4.7572 -2.2069 14 6 2.6279 -6.7532 -1.6463 15 7 2.2860 -7.5554 -0.6619 16 14 2.8103 -7.4262 -3.3792 17 1 2.5180 -8.8821 -3.3782 18 1 1.8589 -6.7309 -4.2830 19 1 4.1991 -7.2005 -3.8542 20 6 1.9805 -2.4906 -0.0047 21 6 2.2560 -1.1269 -0.0005 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 -0.8898 0.5143 24 1 -0.3634 0.8902 0.5134 25 1 1.8833 2.1355 0.0005 26 1 4.3936 1.4401 -0.0011 27 1 5.6583 -1.3029 -0.0007 28 1 5.1371 -3.6905 0.0002 29 1 4.6092 -5.4307 0.5862 30 1 3.5373 -5.2668 1.8472 31 1 2.1247 -8.4959 -0.8364 32 1 0.9574 -2.8366 -0.0090 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261292766.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:09 Heat of formation + Delta-G solvation = 44.504020 kcal Electronic energy + Delta-G solvation = -15380.189928 eV Core-core repulsion = 12919.288996 eV Total energy + Delta-G solvation = -2460.900932 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.09001 -38.75168 -35.76703 -33.82560 -33.00100 -31.23448 -29.46549 -27.78706 -27.02801 -24.22376 -23.24593 -21.58705 -20.62171 -18.50752 -17.83459 -17.10563 -16.59586 -16.34273 -16.14011 -15.55001 -14.99630 -14.85168 -14.31740 -14.00127 -13.75995 -13.62130 -13.24044 -13.08519 -12.82053 -12.70530 -12.37265 -12.15713 -11.92269 -11.51623 -11.18087 -10.55534 -10.41297 -9.08327 -8.78854 -8.42349 -7.96954 -6.19480 0.33417 0.79325 1.42574 1.43903 1.51559 1.90571 2.03276 2.46773 3.07897 3.25581 3.85451 3.97533 4.08049 4.22127 4.37823 4.44183 4.47334 4.62353 4.66959 4.69874 4.87662 5.00855 5.08783 5.26865 5.34955 5.66570 5.75649 5.89401 5.93785 6.00319 6.19577 6.40816 6.55112 6.66506 7.11051 7.27582 7.52516 9.05413 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034394 B = 0.006839 C = 0.006525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.902749 B = 4092.968885 C = 4290.232353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.496 5.496 3 C 0.053 3.947 4 C -0.223 4.223 5 C -0.146 4.146 6 C -0.078 4.078 7 C -0.151 4.151 8 C -0.075 4.075 9 C 0.263 3.737 10 H 0.008 0.992 11 N -0.817 5.817 12 C -0.543 4.543 13 H 0.042 0.958 14 C 0.036 3.964 15 N -0.880 5.880 16 Si 0.948 3.052 17 H -0.282 1.282 18 H -0.275 1.275 19 H -0.273 1.273 20 C -0.149 4.149 21 C 0.079 3.921 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.115 0.885 25 H 0.210 0.790 26 H 0.166 0.834 27 H 0.140 0.860 28 H 0.117 0.883 29 H 0.324 0.676 30 H 0.310 0.690 31 H 0.256 0.744 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.931 17.438 1.944 17.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.180 5.180 3 C -0.072 4.072 4 C -0.248 4.248 5 C -0.151 4.151 6 C -0.097 4.097 7 C -0.171 4.171 8 C -0.079 4.079 9 C 0.153 3.847 10 H 0.026 0.974 11 N -0.344 5.344 12 C -0.582 4.582 13 H 0.060 0.940 14 C -0.168 4.168 15 N -0.516 5.516 16 Si 0.773 3.227 17 H -0.207 1.207 18 H -0.200 1.200 19 H -0.198 1.198 20 C -0.171 4.171 21 C -0.027 4.027 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.134 0.866 25 H 0.227 0.773 26 H 0.184 0.816 27 H 0.158 0.842 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.121 0.879 31 H 0.065 0.935 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.728 16.585 1.782 16.769 hybrid contribution 0.270 0.011 -0.672 0.724 sum -1.458 16.596 1.110 16.696 Atomic orbital electron populations 1.22147 0.75616 1.05262 1.03726 1.44123 1.07045 1.03836 1.62979 1.22434 0.89996 0.92029 1.02698 1.21948 0.97490 0.91488 1.13829 1.19610 0.92088 0.95189 1.08227 1.20442 0.98761 0.91440 0.99022 1.20530 0.95797 0.95873 1.04864 1.21091 0.93290 0.98119 0.95420 1.17794 0.91694 0.82892 0.92347 0.97431 1.59048 1.07597 1.64380 1.03392 1.21079 1.49948 0.94136 0.92988 0.93984 1.25674 0.94059 0.97234 0.99812 1.70223 1.44822 1.04308 1.32261 0.85814 0.78655 0.77234 0.80979 1.20700 1.20033 1.19806 1.19876 0.98891 0.89592 1.08731 1.18394 0.91336 0.88373 1.04625 0.90829 0.91030 0.86638 0.77289 0.81612 0.84206 0.86520 0.86286 0.87875 0.93481 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.40 11.03 127.77 1.41 2.80 16 2 N -0.50 -13.59 3.18 -539.28 -1.71 -15.31 16 3 C 0.05 1.17 11.29 83.00 0.94 2.11 16 4 C -0.22 -5.83 11.08 23.51 0.26 -5.57 16 5 C -0.15 -5.11 6.37 -20.20 -0.13 -5.24 16 6 C -0.08 -2.78 10.05 22.23 0.22 -2.55 16 7 C -0.15 -6.17 9.21 22.04 0.20 -5.97 16 8 C -0.08 -3.44 4.89 -19.84 -0.10 -3.54 16 9 C 0.26 13.83 2.84 43.42 0.12 13.95 16 10 H 0.01 0.46 7.98 -2.39 -0.02 0.44 16 11 N -0.82 -40.25 8.36 -174.97 -1.46 -41.71 16 12 C -0.54 -31.25 8.70 25.60 0.22 -31.03 16 13 H 0.04 2.45 7.74 -2.91 -0.02 2.43 16 14 C 0.04 2.05 5.39 84.66 0.46 2.51 16 15 N -0.88 -52.87 12.77 21.45 0.27 -52.60 16 16 Si 0.95 45.03 29.54 68.60 2.03 47.05 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 18 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 20 C -0.15 -6.31 9.57 22.37 0.21 -6.10 16 21 C 0.08 2.89 6.81 39.03 0.27 3.15 16 22 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.07 1.49 8.11 -2.39 -0.02 1.47 16 24 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.21 2.43 8.06 -2.91 -0.02 2.41 16 26 H 0.17 3.31 8.06 -2.91 -0.02 3.29 16 27 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 28 H 0.12 4.63 6.62 -2.91 -0.02 4.61 16 29 H 0.32 15.11 7.30 -89.69 -0.66 14.46 16 30 H 0.31 13.77 9.06 -89.69 -0.81 12.96 16 31 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 32 H 0.11 4.39 8.02 -2.91 -0.02 4.37 16 Total: -1.00 -70.37 275.99 2.88 -67.49 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: -0.33 Total: 30.55 kcal Atomic # 6 Polarization: -39.57 SS G_CDS: 4.09 Total: -35.48 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -2.90 Total: -109.61 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -70.37 2.88 -67.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261292766.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.991 kcal (2) G-P(sol) polarization free energy of solvation -70.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds