Wall clock time and date at job start Mon Mar 30 2020 03:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53103 * 1 3 3 H 1.10993 * 106.69203 * 2 1 4 4 C 1.52569 * 109.95723 * 244.23946 * 2 1 3 5 5 C 1.52930 * 110.10265 * 281.05799 * 4 2 1 6 6 C 1.52901 * 108.58291 * 301.17215 * 5 4 2 7 7 H 1.09260 * 109.35417 * 299.29067 * 6 5 4 8 8 O 1.43054 * 109.46351 * 179.91874 * 6 5 4 9 9 C 1.52805 * 110.15020 * 59.50336 * 6 5 4 10 10 C 1.53337 * 109.43498 * 76.18796 * 9 6 5 11 11 C 1.54319 * 107.76272 * 192.76773 * 9 6 5 12 12 H 1.09002 * 109.47125 * 302.15089 * 11 9 6 13 13 O 1.42896 * 109.47404 * 62.15094 * 11 9 6 14 14 C 1.50703 * 109.47012 * 182.15117 * 11 9 6 15 15 H 1.07996 * 119.99751 * 359.97438 * 14 11 9 16 16 C 1.37877 * 120.00001 * 180.02562 * 14 11 9 17 17 N 1.31517 * 120.00094 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99955 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47171 * 89.99544 * 18 16 14 20 20 H 1.48500 * 109.46632 * 209.99795 * 18 16 14 21 21 H 1.48494 * 109.47053 * 329.99231 * 18 16 14 22 22 O 1.40623 * 111.65755 * 117.62023 * 2 1 3 23 23 H 1.08992 * 109.47633 * 175.75768 * 1 2 3 24 24 H 1.08999 * 109.46666 * 295.76336 * 1 2 3 25 25 H 1.09001 * 109.46574 * 55.75647 * 1 2 3 26 26 H 1.09226 * 109.57579 * 160.71627 * 4 2 1 27 27 H 1.09239 * 109.56364 * 41.38238 * 4 2 1 28 28 H 1.09409 * 109.16997 * 182.22112 * 5 4 2 29 29 H 1.08658 * 110.43470 * 62.52864 * 5 4 2 30 30 H 0.96696 * 114.00529 * 59.16859 * 8 6 5 31 31 H 1.09000 * 109.47472 * 176.75913 * 10 9 6 32 32 H 1.08995 * 109.47713 * 296.76161 * 10 9 6 33 33 H 1.09004 * 109.47102 * 56.75980 * 10 9 6 34 34 H 0.96708 * 114.00101 * 59.99355 * 13 11 9 35 35 H 0.97000 * 120.00333 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5310 0.0000 0.0000 3 1 1.8498 1.0632 0.0000 4 6 2.0518 -0.6233 -1.2916 5 6 1.9723 -2.1482 -1.2086 6 6 2.8039 -2.6153 -0.0136 7 1 3.8443 -2.3136 -0.1564 8 8 2.7410 -4.0412 0.0828 9 6 2.2686 -1.9935 1.2755 10 6 0.9843 -2.7179 1.6964 11 6 3.3175 -2.2287 2.3827 12 1 3.5005 -3.2980 2.4885 13 8 4.5359 -1.5694 2.0325 14 6 2.8039 -1.6755 3.6870 15 1 1.8330 -1.2042 3.7286 16 6 3.5738 -1.7700 4.8268 17 7 4.7563 -2.3434 4.7759 18 14 2.9368 -1.0848 6.4437 19 1 2.1818 -2.1404 7.1654 20 1 4.0817 -0.6374 7.2769 21 1 2.0407 0.0681 6.1739 22 8 2.0500 -0.6059 1.1580 23 1 -0.3634 -1.0247 -0.0760 24 1 -0.3632 0.4467 0.9255 25 1 -0.3632 0.5783 -0.8496 26 1 3.0897 -0.3226 -1.4505 27 1 1.4507 -0.2744 -2.1344 28 1 2.3855 -2.5799 -2.1251 29 1 0.9395 -2.4691 -1.1032 30 1 3.0657 -4.5032 -0.7021 31 1 0.6334 -2.3134 2.6458 32 1 0.2187 -2.5725 0.9344 33 1 1.1879 -3.7829 1.8082 34 1 4.4477 -0.6127 1.9215 35 1 5.2982 -2.4095 5.5777 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307297755.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:09 Heat of formation + Delta-G solvation = -153.462018 kcal Electronic energy + Delta-G solvation = -17949.565947 eV Core-core repulsion = 15140.478893 eV Total energy + Delta-G solvation = -2809.087054 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.69206 -36.16913 -35.41998 -32.95076 -31.98635 -31.46579 -29.39492 -26.26458 -25.31406 -23.82050 -22.41081 -20.80164 -18.02725 -17.04998 -16.84227 -15.87174 -15.45237 -14.52040 -14.41712 -14.15697 -13.71554 -13.39920 -12.88007 -12.79510 -12.44077 -12.08525 -11.94026 -11.73220 -11.44650 -11.24538 -10.92257 -10.84941 -10.74053 -10.52881 -10.31062 -9.96866 -9.70657 -9.46662 -9.04366 -8.50007 -8.38607 -7.87167 -5.85696 -3.98905 3.37302 3.43825 3.48012 4.13954 4.51380 4.65669 4.99716 5.01863 5.14676 5.34662 5.41889 5.47877 5.61285 5.73137 5.88660 5.92189 5.96292 6.07011 6.09823 6.24516 6.31777 6.36236 6.53333 6.68915 6.75332 6.93733 7.21516 7.81163 8.01343 8.03575 8.30918 8.61063 9.01666 9.51869 9.73662 11.19138 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.031853 B = 0.009906 C = 0.008800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.828220 B = 2825.780386 C = 3180.902328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.097 3.903 3 H 0.083 0.917 4 C -0.145 4.145 5 C -0.154 4.154 6 C 0.082 3.918 7 H 0.067 0.933 8 O -0.553 6.553 9 C 0.112 3.888 10 C -0.151 4.151 11 C 0.247 3.753 12 H 0.073 0.927 13 O -0.566 6.566 14 C -0.549 4.549 15 H 0.061 0.939 16 C 0.074 3.926 17 N -0.866 5.866 18 Si 0.886 3.114 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.274 1.274 22 O -0.353 6.353 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.367 0.633 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.066 0.934 34 H 0.349 0.651 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.037 2.055 -11.866 13.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.038 3.962 3 H 0.101 0.899 4 C -0.183 4.183 5 C -0.191 4.191 6 C 0.023 3.977 7 H 0.084 0.916 8 O -0.357 6.357 9 C 0.073 3.927 10 C -0.209 4.209 11 C 0.190 3.810 12 H 0.090 0.910 13 O -0.369 6.369 14 C -0.587 4.587 15 H 0.080 0.920 16 C -0.131 4.131 17 N -0.504 5.504 18 Si 0.714 3.286 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.198 1.198 22 O -0.271 6.271 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.212 0.788 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.193 0.807 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.844 1.630 -10.998 12.560 hybrid contribution -0.549 0.622 -0.060 0.832 sum -6.393 2.252 -11.058 12.970 Atomic orbital electron populations 1.22507 0.97298 1.01999 1.01786 1.21742 0.92582 0.96431 0.85404 0.89903 1.22096 1.02104 0.95554 0.98580 1.22217 1.01756 0.96219 0.98954 1.22391 0.98831 0.81121 0.95335 0.91552 1.86607 1.87820 1.17946 1.43365 1.22227 0.97376 0.79056 0.94060 1.22234 0.96356 1.01230 1.01053 1.19870 0.78874 0.94242 0.88022 0.90972 1.86483 1.35939 1.22457 1.91973 1.21640 1.03883 1.39692 0.93447 0.92037 1.25045 0.94671 0.94658 0.98689 1.70081 1.09914 1.42203 1.28162 0.86709 0.78422 0.79426 0.84025 1.20775 1.21369 1.19844 1.86576 1.82853 1.22040 1.35676 0.92633 0.91876 0.92595 0.91307 0.91349 0.92286 0.91205 0.78793 0.91186 0.94981 0.91494 0.80664 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 9.29 37.21 0.35 -2.11 16 2 C 0.10 1.50 3.42 -26.90 -0.09 1.41 16 3 H 0.08 1.18 8.29 -50.78 -0.42 0.76 16 4 C -0.15 -1.95 5.51 -26.99 -0.15 -2.10 16 5 C -0.15 -2.19 5.39 -26.82 -0.14 -2.34 16 6 C 0.08 1.49 2.60 -26.88 -0.07 1.42 16 7 H 0.07 1.29 7.30 -51.78 -0.38 0.91 16 8 O -0.55 -9.75 11.69 -35.23 -0.41 -10.16 16 9 C 0.11 2.36 0.44 -89.85 -0.04 2.33 16 10 C -0.15 -3.10 7.99 37.33 0.30 -2.80 16 11 C 0.25 6.45 2.06 -27.19 -0.06 6.39 16 12 H 0.07 2.12 7.92 -51.93 -0.41 1.70 16 13 O -0.57 -15.02 11.84 -46.38 -0.55 -15.57 16 14 C -0.55 -15.41 7.61 -34.44 -0.26 -15.68 16 15 H 0.06 1.72 6.59 -52.49 -0.35 1.38 16 16 C 0.07 2.13 5.40 -17.82 -0.10 2.03 16 17 N -0.87 -26.30 12.84 55.43 0.71 -25.59 16 18 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 O -0.35 -7.14 8.27 -44.93 -0.37 -7.51 16 23 H 0.05 0.79 5.69 -51.93 -0.30 0.50 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.91 8.16 -51.80 -0.42 0.49 16 27 H 0.07 0.75 8.04 -51.79 -0.42 0.34 16 28 H 0.06 0.71 8.18 -51.70 -0.42 0.29 16 29 H 0.07 1.01 6.57 -52.12 -0.34 0.67 16 30 H 0.37 4.56 9.08 45.56 0.41 4.97 16 31 H 0.07 1.54 6.47 -51.93 -0.34 1.20 16 32 H 0.03 0.57 5.52 -51.93 -0.29 0.28 16 33 H 0.07 1.41 7.24 -51.93 -0.38 1.03 16 34 H 0.35 8.57 8.53 45.56 0.39 8.96 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 273.36 15.07 4.12 4.12 Total: -1.00 -32.02 273.36 -5.42 -37.44 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -3.63 Total: 11.83 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -0.26 Total: -11.45 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.71 Total: -25.59 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -1.33 Total: -33.24 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.02 -5.42 -37.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307297755.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.025 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds