Wall clock time and date at job start Mon Mar 30 2020 03:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53103 * 1 3 3 H 1.10993 * 106.69203 * 2 1 4 4 C 1.52569 * 109.95723 * 244.23946 * 2 1 3 5 5 C 1.52930 * 110.10265 * 281.05799 * 4 2 1 6 6 C 1.52901 * 108.58291 * 301.17215 * 5 4 2 7 7 H 1.09260 * 109.35417 * 299.29067 * 6 5 4 8 8 O 1.43054 * 109.46351 * 179.91874 * 6 5 4 9 9 C 1.52805 * 110.15020 * 59.50336 * 6 5 4 10 10 C 1.53337 * 109.43498 * 76.18796 * 9 6 5 11 11 C 1.54319 * 107.76272 * 192.76773 * 9 6 5 12 12 H 1.09002 * 109.47125 * 302.15089 * 11 9 6 13 13 O 1.42896 * 109.47404 * 62.15094 * 11 9 6 14 14 C 1.50703 * 109.47012 * 182.15117 * 11 9 6 15 15 H 1.07996 * 119.99751 * 359.97438 * 14 11 9 16 16 C 1.37877 * 120.00001 * 180.02562 * 14 11 9 17 17 N 1.31517 * 120.00094 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99955 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47171 * 89.99544 * 18 16 14 20 20 H 1.48500 * 109.46632 * 209.99795 * 18 16 14 21 21 H 1.48494 * 109.47053 * 329.99231 * 18 16 14 22 22 O 1.40623 * 111.65755 * 117.62023 * 2 1 3 23 23 H 1.08992 * 109.47633 * 175.75768 * 1 2 3 24 24 H 1.08999 * 109.46666 * 295.76336 * 1 2 3 25 25 H 1.09001 * 109.46574 * 55.75647 * 1 2 3 26 26 H 1.09226 * 109.57579 * 160.71627 * 4 2 1 27 27 H 1.09239 * 109.56364 * 41.38238 * 4 2 1 28 28 H 1.09409 * 109.16997 * 182.22112 * 5 4 2 29 29 H 1.08658 * 110.43470 * 62.52864 * 5 4 2 30 30 H 0.96696 * 114.00529 * 59.16859 * 8 6 5 31 31 H 1.09000 * 109.47472 * 176.75913 * 10 9 6 32 32 H 1.08995 * 109.47713 * 296.76161 * 10 9 6 33 33 H 1.09004 * 109.47102 * 56.75980 * 10 9 6 34 34 H 0.96708 * 114.00101 * 59.99355 * 13 11 9 35 35 H 0.97000 * 120.00333 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5310 0.0000 0.0000 3 1 1.8498 1.0632 0.0000 4 6 2.0518 -0.6233 -1.2916 5 6 1.9723 -2.1482 -1.2086 6 6 2.8039 -2.6153 -0.0136 7 1 3.8443 -2.3136 -0.1564 8 8 2.7410 -4.0412 0.0828 9 6 2.2686 -1.9935 1.2755 10 6 0.9843 -2.7179 1.6964 11 6 3.3175 -2.2287 2.3827 12 1 3.5005 -3.2980 2.4885 13 8 4.5359 -1.5694 2.0325 14 6 2.8039 -1.6755 3.6870 15 1 1.8330 -1.2042 3.7286 16 6 3.5738 -1.7700 4.8268 17 7 4.7563 -2.3434 4.7759 18 14 2.9368 -1.0848 6.4437 19 1 2.1818 -2.1404 7.1654 20 1 4.0817 -0.6374 7.2769 21 1 2.0407 0.0681 6.1739 22 8 2.0500 -0.6059 1.1580 23 1 -0.3634 -1.0247 -0.0760 24 1 -0.3632 0.4467 0.9255 25 1 -0.3632 0.5783 -0.8496 26 1 3.0897 -0.3226 -1.4505 27 1 1.4507 -0.2744 -2.1344 28 1 2.3855 -2.5799 -2.1251 29 1 0.9395 -2.4691 -1.1032 30 1 3.0657 -4.5032 -0.7021 31 1 0.6334 -2.3134 2.6458 32 1 0.2187 -2.5725 0.9344 33 1 1.1879 -3.7829 1.8082 34 1 4.4477 -0.6127 1.9215 35 1 5.2982 -2.4095 5.5777 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307297755.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:09 Heat of formation + Delta-G solvation = -179.318589 kcal Electronic energy + Delta-G solvation = -17950.687172 eV Core-core repulsion = 15140.478893 eV Total energy + Delta-G solvation = -2810.208279 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.14299 -37.57894 -37.28256 -34.36170 -34.18970 -32.99287 -30.74599 -28.26599 -26.70635 -25.42675 -23.85707 -22.48229 -19.36375 -19.02680 -18.30928 -17.47611 -16.94469 -16.61939 -15.85695 -15.66181 -15.36830 -14.84092 -14.48766 -14.31424 -13.96420 -13.56906 -13.36470 -13.10211 -13.08082 -12.82393 -12.75965 -12.62666 -12.30715 -12.10328 -12.01813 -11.66892 -11.08122 -11.00552 -10.70553 -10.63651 -10.06640 -9.81458 -8.05884 -6.26231 1.40448 1.41165 1.52465 2.43606 2.72726 3.20720 3.38475 3.81598 3.84874 3.96050 4.08933 4.18777 4.28570 4.40789 4.54473 4.64181 4.70868 4.79401 4.87604 4.94942 4.99158 5.06677 5.12319 5.17753 5.33321 5.45388 5.51698 5.75296 5.80427 6.18379 6.81091 6.90038 7.14707 7.39980 7.57541 8.99010 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.031853 B = 0.009906 C = 0.008800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.828220 B = 2825.780386 C = 3180.902328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.080 3.920 3 H 0.096 0.904 4 C -0.141 4.141 5 C -0.144 4.144 6 C 0.085 3.915 7 H 0.047 0.953 8 O -0.573 6.573 9 C 0.123 3.877 10 C -0.143 4.143 11 C 0.244 3.756 12 H 0.029 0.971 13 O -0.578 6.578 14 C -0.555 4.555 15 H 0.058 0.942 16 C 0.019 3.981 17 N -0.907 5.907 18 Si 0.955 3.045 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.266 1.266 22 O -0.380 6.380 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.389 0.611 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.356 0.644 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.509 3.069 -13.464 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.023 3.977 3 H 0.114 0.886 4 C -0.179 4.179 5 C -0.182 4.182 6 C 0.026 3.974 7 H 0.065 0.935 8 O -0.381 6.381 9 C 0.084 3.916 10 C -0.200 4.200 11 C 0.187 3.813 12 H 0.047 0.953 13 O -0.382 6.382 14 C -0.593 4.593 15 H 0.076 0.924 16 C -0.182 4.182 17 N -0.545 5.545 18 Si 0.780 3.220 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.191 1.191 22 O -0.300 6.300 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.107 0.893 26 H 0.087 0.913 27 H 0.122 0.878 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.238 0.762 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.200 0.800 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.330 2.644 -12.622 14.834 hybrid contribution -0.080 0.318 0.383 0.504 sum -7.410 2.962 -12.240 14.611 Atomic orbital electron populations 1.22448 0.95766 1.02151 1.02604 1.22127 0.93836 0.96756 0.84987 0.88641 1.22089 1.02760 0.94647 0.98362 1.22140 1.01120 0.96943 0.97980 1.22208 0.98387 0.81280 0.95530 0.93480 1.86556 1.88084 1.18023 1.45428 1.21695 0.95690 0.80255 0.93983 1.22116 0.96984 1.00110 1.00822 1.19635 0.80124 0.91679 0.89857 0.95339 1.86424 1.36693 1.22992 1.92107 1.21926 1.03607 1.39049 0.94691 0.92361 1.25890 0.94863 0.95047 1.02404 1.70222 1.11324 1.43834 1.29147 0.85631 0.77911 0.78916 0.79556 1.20028 1.20976 1.19077 1.86476 1.83650 1.21179 1.38682 0.93142 0.93209 0.89261 0.91323 0.87806 0.89268 0.90905 0.76205 0.93381 0.92182 0.92783 0.79952 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 9.29 72.02 0.67 -3.54 16 2 C 0.08 2.28 3.42 30.49 0.10 2.38 16 3 H 0.10 2.47 8.29 -1.31 -0.01 2.46 16 4 C -0.14 -3.24 5.51 30.43 0.17 -3.07 16 5 C -0.14 -3.63 5.39 30.54 0.16 -3.47 16 6 C 0.09 3.00 2.60 30.50 0.08 3.08 16 7 H 0.05 1.83 7.30 -2.25 -0.02 1.81 16 8 O -0.57 -19.93 11.69 -148.98 -1.74 -21.67 16 9 C 0.12 5.22 0.44 -10.30 0.00 5.21 16 10 C -0.14 -5.86 7.99 72.10 0.58 -5.29 16 11 C 0.24 13.20 2.06 30.30 0.06 13.26 16 12 H 0.03 1.78 7.92 -2.39 -0.02 1.76 16 13 O -0.58 -31.76 11.84 -138.32 -1.64 -33.40 16 14 C -0.55 -31.97 7.61 25.60 0.19 -31.77 16 15 H 0.06 3.33 6.59 -2.91 -0.02 3.31 16 16 C 0.02 1.09 5.40 84.65 0.46 1.55 16 17 N -0.91 -56.58 12.84 21.45 0.28 -56.31 16 18 Si 0.95 45.67 29.54 68.60 2.03 47.70 16 19 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 20 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 22 O -0.38 -15.16 8.27 -133.13 -1.10 -16.26 16 23 H 0.05 1.27 5.69 -2.39 -0.01 1.26 16 24 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.07 1.60 8.16 -2.27 -0.02 1.58 16 27 H 0.10 1.72 8.04 -2.26 -0.02 1.70 16 28 H 0.09 1.75 8.18 -2.17 -0.02 1.73 16 29 H 0.07 1.83 6.57 -2.57 -0.02 1.81 16 30 H 0.39 9.14 9.08 -74.06 -0.67 8.47 16 31 H 0.05 2.14 6.47 -2.39 -0.02 2.12 16 32 H 0.06 2.08 5.52 -2.39 -0.01 2.06 16 33 H 0.05 2.31 7.24 -2.38 -0.02 2.29 16 34 H 0.36 17.98 8.53 -74.05 -0.63 17.35 16 35 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -70.88 273.36 0.10 -70.78 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: -0.19 Total: 30.82 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 2.47 Total: -21.65 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.28 Total: -56.31 kcal Atomic # 8 Polarization: -66.85 SS G_CDS: -4.48 Total: -71.33 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -70.88 0.10 -70.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307297755.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.540 kcal (2) G-P(sol) polarization free energy of solvation -70.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds