Wall clock time and date at job start Mon Mar 30 2020 03:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.48768 * 2 1 4 4 C 1.53091 * 109.48142 * 239.96966 * 2 1 3 5 5 C 1.53176 * 109.21206 * 182.43908 * 4 2 1 6 6 C 1.53174 * 109.03724 * 56.94941 * 5 4 2 7 7 H 1.09007 * 109.52410 * 62.92341 * 6 5 4 8 8 O 1.42902 * 109.52097 * 183.11156 * 6 5 4 9 9 C 1.53084 * 109.16456 * 303.01556 * 6 5 4 10 10 C 1.53004 * 109.48207 * 297.61742 * 9 6 5 11 11 C 1.52998 * 109.48368 * 177.59004 * 9 6 5 12 12 H 1.09010 * 109.46671 * 60.00379 * 11 9 6 13 13 O 1.42896 * 109.47257 * 300.00191 * 11 9 6 14 14 C 1.50702 * 109.47489 * 180.02562 * 11 9 6 15 15 H 1.08000 * 119.99814 * 359.97438 * 14 11 9 16 16 C 1.37877 * 119.99995 * 180.02562 * 14 11 9 17 17 N 1.31512 * 120.00200 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 119.99585 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47184 * 59.99846 * 18 16 14 20 20 H 1.48498 * 109.46785 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47210 * 299.99459 * 18 16 14 22 22 O 1.42906 * 109.41372 * 57.61236 * 9 6 5 23 23 H 1.09002 * 109.47135 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47302 * 300.03038 * 1 2 3 25 25 H 1.08994 * 109.47100 * 60.03421 * 1 2 3 26 26 H 1.09002 * 109.52401 * 62.50061 * 4 2 1 27 27 H 1.09004 * 109.52068 * 302.37706 * 4 2 1 28 28 H 1.09004 * 109.53956 * 176.81728 * 5 4 2 29 29 H 1.08997 * 109.54550 * 296.98990 * 5 4 2 30 30 H 0.96707 * 113.99863 * 299.99613 * 8 6 5 31 31 H 1.09001 * 109.46909 * 59.99654 * 10 9 6 32 32 H 1.08995 * 109.47076 * 179.97438 * 10 9 6 33 33 H 1.08997 * 109.46950 * 299.99526 * 10 9 6 34 34 H 0.96694 * 114.00447 * 300.00059 * 13 11 9 35 35 H 0.97002 * 119.99909 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7223 -1.2495 5 6 3.5711 -0.7722 -1.2129 6 6 4.0177 -1.4613 0.0802 7 1 3.6604 -2.4912 0.0863 8 8 5.4444 -1.4490 0.1596 9 6 3.4322 -0.7096 1.2783 10 6 3.9790 0.7192 1.3012 11 6 3.8241 -1.4267 2.5718 12 1 4.9105 -1.4552 2.6565 13 8 3.3128 -2.7609 2.5505 14 6 3.2471 -0.6869 3.7511 15 1 2.6599 0.2057 3.5938 16 6 3.4697 -1.1491 5.0309 17 7 4.1852 -2.2358 5.2224 18 14 2.7538 -0.2324 6.4926 19 1 1.2738 -0.1951 6.3770 20 1 3.1344 -0.9284 7.7480 21 1 3.2837 1.1546 6.5149 22 8 2.0079 -0.6733 1.1665 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5143 0.8897 25 1 -0.3633 0.5133 -0.8902 26 1 1.7149 -0.1844 -2.1399 27 1 1.6434 -1.7372 -1.2714 28 1 3.9382 -1.3346 -2.0714 29 1 3.9698 0.2417 -1.2437 30 1 5.8830 -1.9045 -0.5721 31 1 3.6992 1.2300 0.3798 32 1 3.5616 1.2543 2.1540 33 1 5.0653 0.6911 1.3856 34 1 2.3501 -2.8121 2.4764 35 1 4.3421 -2.5607 6.1228 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307751974.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:15 Heat of formation + Delta-G solvation = -155.034895 kcal Electronic energy + Delta-G solvation = -17885.726106 eV Core-core repulsion = 15076.570847 eV Total energy + Delta-G solvation = -2809.155259 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.76525 -36.10049 -35.37517 -32.74475 -31.98846 -31.63274 -29.31808 -26.19814 -25.63180 -23.53113 -21.97968 -20.65634 -18.77144 -16.98890 -16.79686 -15.89280 -15.36961 -14.50024 -14.46052 -14.02865 -13.47766 -13.37103 -13.02182 -12.79565 -12.46096 -12.04548 -11.78369 -11.70864 -11.49313 -11.35040 -10.97427 -10.80144 -10.77594 -10.62632 -10.34827 -10.01186 -9.95015 -9.47307 -8.87587 -8.66760 -8.42001 -7.90399 -5.86261 -4.00419 3.38095 3.42471 3.45088 4.19856 4.50443 4.77634 4.95960 5.06656 5.15491 5.41062 5.46128 5.53599 5.62027 5.78685 5.83325 5.92697 5.99948 6.03707 6.06678 6.17141 6.29644 6.38503 6.47296 6.60933 6.70068 6.92031 7.10267 7.72976 7.96780 8.05972 8.16808 8.38400 8.99922 9.53183 9.72859 11.18429 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.029615 B = 0.010137 C = 0.008651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.252597 B = 2761.485235 C = 3235.855355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.075 3.925 3 H 0.055 0.945 4 C -0.144 4.144 5 C -0.158 4.158 6 C 0.086 3.914 7 H 0.064 0.936 8 O -0.552 6.552 9 C 0.102 3.898 10 C -0.160 4.160 11 C 0.253 3.747 12 H 0.074 0.926 13 O -0.564 6.564 14 C -0.553 4.553 15 H 0.059 0.941 16 C 0.075 3.925 17 N -0.865 5.865 18 Si 0.887 3.113 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 O -0.347 6.347 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.366 0.634 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.349 0.651 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.422 3.571 -12.694 13.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.016 3.984 3 H 0.073 0.927 4 C -0.182 4.182 5 C -0.195 4.195 6 C 0.027 3.973 7 H 0.082 0.918 8 O -0.355 6.355 9 C 0.062 3.938 10 C -0.217 4.217 11 C 0.196 3.804 12 H 0.092 0.908 13 O -0.367 6.367 14 C -0.591 4.591 15 H 0.077 0.923 16 C -0.130 4.130 17 N -0.501 5.501 18 Si 0.715 3.285 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.203 1.203 22 O -0.266 6.266 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.212 0.788 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.193 0.807 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.947 3.551 -11.813 12.683 hybrid contribution -0.690 0.514 -0.071 0.863 sum -3.637 4.065 -11.884 13.076 Atomic orbital electron populations 1.21712 0.93733 1.02612 1.01789 1.22042 0.94600 0.95671 0.86047 0.92696 1.22180 0.95444 1.01834 0.98705 1.22431 0.96359 1.02040 0.98706 1.22393 0.81074 0.99303 0.94555 0.91847 1.86585 1.18369 1.79872 1.50722 1.22409 0.79388 0.95354 0.96632 1.22212 1.02182 0.96629 1.00672 1.19422 0.95335 0.79287 0.86399 0.90833 1.86495 1.23905 1.29872 1.96386 1.21596 1.34449 1.11886 0.91148 0.92267 1.25035 0.94541 0.94571 0.98807 1.70073 1.37565 1.21272 1.21239 0.86768 0.79702 0.79945 0.82106 1.20241 1.21410 1.20327 1.88124 1.20851 1.76907 1.40755 0.92013 0.91797 0.91994 0.91607 0.91250 0.92244 0.91205 0.78812 0.94365 0.91027 0.91479 0.80720 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.57 37.16 0.36 -1.52 16 2 C 0.07 1.18 2.94 -26.68 -0.08 1.10 16 3 H 0.06 0.86 6.35 -51.93 -0.33 0.53 16 4 C -0.14 -1.96 5.42 -26.59 -0.14 -2.10 16 5 C -0.16 -2.27 5.34 -26.55 -0.14 -2.41 16 6 C 0.09 1.57 2.65 -26.60 -0.07 1.50 16 7 H 0.06 1.23 7.62 -51.93 -0.40 0.84 16 8 O -0.55 -9.96 11.99 -35.23 -0.42 -10.38 16 9 C 0.10 2.16 0.37 -90.58 -0.03 2.13 16 10 C -0.16 -3.20 7.51 37.16 0.28 -2.92 16 11 C 0.25 6.66 2.11 -27.88 -0.06 6.60 16 12 H 0.07 2.18 7.76 -51.92 -0.40 1.77 16 13 O -0.56 -15.24 12.02 -44.89 -0.54 -15.78 16 14 C -0.55 -15.60 7.70 -34.44 -0.27 -15.86 16 15 H 0.06 1.66 6.66 -52.49 -0.35 1.31 16 16 C 0.08 2.17 5.40 -17.82 -0.10 2.08 16 17 N -0.86 -26.35 12.84 55.43 0.71 -25.64 16 18 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 O -0.35 -7.11 8.96 -44.89 -0.40 -7.51 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.01 6.63 -51.93 -0.34 0.66 16 30 H 0.37 4.68 9.08 45.56 0.41 5.10 16 31 H 0.04 0.65 4.98 -51.93 -0.26 0.40 16 32 H 0.07 1.53 6.62 -51.93 -0.34 1.19 16 33 H 0.07 1.37 7.62 -51.93 -0.40 0.98 16 34 H 0.35 8.76 8.56 45.56 0.39 9.15 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 274.70 15.07 4.14 4.14 Total: -1.00 -32.26 274.70 -5.47 -37.74 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -3.69 Total: 11.93 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -0.25 Total: -11.40 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.71 Total: -25.64 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -1.36 Total: -33.67 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.26 -5.47 -37.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307751974.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.297 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds