Wall clock time and date at job start Mon Mar 30 2020 03:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.48768 * 2 1 4 4 C 1.53091 * 109.48142 * 239.96966 * 2 1 3 5 5 C 1.53176 * 109.21206 * 182.43908 * 4 2 1 6 6 C 1.53174 * 109.03724 * 56.94941 * 5 4 2 7 7 H 1.09007 * 109.52410 * 62.92341 * 6 5 4 8 8 O 1.42902 * 109.52097 * 183.11156 * 6 5 4 9 9 C 1.53084 * 109.16456 * 303.01556 * 6 5 4 10 10 C 1.53004 * 109.48207 * 297.61742 * 9 6 5 11 11 C 1.52998 * 109.48368 * 177.59004 * 9 6 5 12 12 H 1.09010 * 109.46671 * 60.00379 * 11 9 6 13 13 O 1.42896 * 109.47257 * 300.00191 * 11 9 6 14 14 C 1.50702 * 109.47489 * 180.02562 * 11 9 6 15 15 H 1.08000 * 119.99814 * 359.97438 * 14 11 9 16 16 C 1.37877 * 119.99995 * 180.02562 * 14 11 9 17 17 N 1.31512 * 120.00200 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 119.99585 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47184 * 59.99846 * 18 16 14 20 20 H 1.48498 * 109.46785 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47210 * 299.99459 * 18 16 14 22 22 O 1.42906 * 109.41372 * 57.61236 * 9 6 5 23 23 H 1.09002 * 109.47135 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47302 * 300.03038 * 1 2 3 25 25 H 1.08994 * 109.47100 * 60.03421 * 1 2 3 26 26 H 1.09002 * 109.52401 * 62.50061 * 4 2 1 27 27 H 1.09004 * 109.52068 * 302.37706 * 4 2 1 28 28 H 1.09004 * 109.53956 * 176.81728 * 5 4 2 29 29 H 1.08997 * 109.54550 * 296.98990 * 5 4 2 30 30 H 0.96707 * 113.99863 * 299.99613 * 8 6 5 31 31 H 1.09001 * 109.46909 * 59.99654 * 10 9 6 32 32 H 1.08995 * 109.47076 * 179.97438 * 10 9 6 33 33 H 1.08997 * 109.46950 * 299.99526 * 10 9 6 34 34 H 0.96694 * 114.00447 * 300.00059 * 13 11 9 35 35 H 0.97002 * 119.99909 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7223 -1.2495 5 6 3.5711 -0.7722 -1.2129 6 6 4.0177 -1.4613 0.0802 7 1 3.6604 -2.4912 0.0863 8 8 5.4444 -1.4490 0.1596 9 6 3.4322 -0.7096 1.2783 10 6 3.9790 0.7192 1.3012 11 6 3.8241 -1.4267 2.5718 12 1 4.9105 -1.4552 2.6565 13 8 3.3128 -2.7609 2.5505 14 6 3.2471 -0.6869 3.7511 15 1 2.6599 0.2057 3.5938 16 6 3.4697 -1.1491 5.0309 17 7 4.1852 -2.2358 5.2224 18 14 2.7538 -0.2324 6.4926 19 1 1.2738 -0.1951 6.3770 20 1 3.1344 -0.9284 7.7480 21 1 3.2837 1.1546 6.5149 22 8 2.0079 -0.6733 1.1665 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5143 0.8897 25 1 -0.3633 0.5133 -0.8902 26 1 1.7149 -0.1844 -2.1399 27 1 1.6434 -1.7372 -1.2714 28 1 3.9382 -1.3346 -2.0714 29 1 3.9698 0.2417 -1.2437 30 1 5.8830 -1.9045 -0.5721 31 1 3.6992 1.2300 0.3798 32 1 3.5616 1.2543 2.1540 33 1 5.0653 0.6911 1.3856 34 1 2.3501 -2.8121 2.4764 35 1 4.3421 -2.5607 6.1228 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307751974.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:15 Heat of formation + Delta-G solvation = -181.397297 kcal Electronic energy + Delta-G solvation = -17886.869266 eV Core-core repulsion = 15076.570847 eV Total energy + Delta-G solvation = -2810.298419 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.22952 -37.53238 -37.27674 -34.21174 -34.15207 -33.08681 -30.74997 -28.23455 -27.02129 -25.18911 -23.36834 -22.24755 -20.18966 -18.99667 -18.30765 -17.36071 -17.09089 -16.61684 -15.90242 -15.49325 -15.20409 -14.85407 -14.52635 -14.26480 -13.99171 -13.60771 -13.24941 -13.09902 -12.89160 -12.79406 -12.75688 -12.67448 -12.57907 -12.08836 -12.01677 -11.66966 -11.36927 -11.12571 -10.66187 -10.63161 -10.18086 -9.85663 -8.07188 -6.28728 1.39505 1.42156 1.49834 2.42274 2.80446 3.19326 3.47899 3.80041 3.85490 3.89549 4.16005 4.25885 4.28153 4.37352 4.49703 4.65787 4.72910 4.78381 4.87748 4.88556 4.96255 5.06207 5.11522 5.22923 5.27884 5.38699 5.48862 5.71561 5.77838 6.14944 6.61841 6.78330 6.97274 7.38019 7.55669 8.97561 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.029615 B = 0.010137 C = 0.008651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.252597 B = 2761.485235 C = 3235.855355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.062 3.938 3 H 0.057 0.943 4 C -0.139 4.139 5 C -0.148 4.148 6 C 0.089 3.911 7 H 0.045 0.955 8 O -0.574 6.574 9 C 0.107 3.893 10 C -0.152 4.152 11 C 0.251 3.749 12 H 0.030 0.970 13 O -0.578 6.578 14 C -0.560 4.560 15 H 0.058 0.942 16 C 0.019 3.981 17 N -0.905 5.905 18 Si 0.956 3.044 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.268 1.268 22 O -0.375 6.375 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.389 0.611 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.354 0.646 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.611 4.818 -14.488 15.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.004 3.996 3 H 0.075 0.925 4 C -0.176 4.176 5 C -0.185 4.185 6 C 0.029 3.971 7 H 0.063 0.937 8 O -0.381 6.381 9 C 0.067 3.933 10 C -0.209 4.209 11 C 0.193 3.807 12 H 0.048 0.952 13 O -0.382 6.382 14 C -0.598 4.598 15 H 0.076 0.924 16 C -0.182 4.182 17 N -0.544 5.544 18 Si 0.781 3.219 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.193 1.193 22 O -0.295 6.295 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.115 0.885 26 H 0.120 0.880 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.238 0.762 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.199 0.801 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.139 4.808 -13.637 15.040 hybrid contribution -0.315 0.108 0.442 0.553 sum -4.454 4.916 -13.195 14.769 Atomic orbital electron populations 1.21736 0.91891 1.02849 1.02951 1.22429 0.96096 0.95601 0.85426 0.92469 1.22172 0.94641 1.02016 0.98791 1.22353 0.96997 1.02082 0.97081 1.22229 0.81079 0.98297 0.95451 0.93685 1.86536 1.18565 1.80415 1.52595 1.21940 0.80593 0.95442 0.95326 1.22113 1.01169 0.96176 1.01449 1.19172 0.92871 0.79366 0.89247 0.95201 1.86436 1.24377 1.30641 1.96699 1.21896 1.33902 1.11783 0.92194 0.92406 1.25902 0.94932 0.95414 1.01907 1.70221 1.39234 1.23096 1.21825 0.85673 0.79071 0.78838 0.78342 1.19477 1.21015 1.19340 1.88053 1.19915 1.77871 1.43648 0.92240 0.93002 0.88467 0.87969 0.91386 0.89247 0.90761 0.76226 0.91054 0.93071 0.92634 0.80103 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.57 71.98 0.69 -2.59 16 2 C 0.06 1.80 2.94 30.63 0.09 1.89 16 3 H 0.06 1.63 6.35 -2.39 -0.02 1.61 16 4 C -0.14 -3.25 5.42 30.68 0.17 -3.08 16 5 C -0.15 -3.75 5.34 30.71 0.16 -3.58 16 6 C 0.09 3.17 2.65 30.68 0.08 3.25 16 7 H 0.05 1.75 7.62 -2.38 -0.02 1.74 16 8 O -0.57 -20.52 11.99 -148.98 -1.79 -22.31 16 9 C 0.11 4.55 0.37 -10.76 0.00 4.55 16 10 C -0.15 -6.04 7.51 71.98 0.54 -5.50 16 11 C 0.25 13.68 2.11 29.85 0.06 13.75 16 12 H 0.03 1.88 7.76 -2.38 -0.02 1.87 16 13 O -0.58 -32.41 12.02 -139.74 -1.68 -34.09 16 14 C -0.56 -32.38 7.70 25.60 0.20 -32.18 16 15 H 0.06 3.29 6.66 -2.91 -0.02 3.27 16 16 C 0.02 1.14 5.40 84.65 0.46 1.60 16 17 N -0.91 -56.78 12.84 21.45 0.28 -56.51 16 18 Si 0.96 45.62 29.54 68.60 2.03 47.65 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 20 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 22 O -0.37 -15.16 8.96 -139.74 -1.25 -16.41 16 23 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.07 1.85 6.63 -2.39 -0.02 1.83 16 30 H 0.39 9.47 9.08 -74.05 -0.67 8.79 16 31 H 0.07 2.31 4.98 -2.39 -0.01 2.30 16 32 H 0.05 2.20 6.62 -2.39 -0.02 2.18 16 33 H 0.05 2.29 7.62 -2.39 -0.02 2.28 16 34 H 0.35 18.44 8.56 -74.06 -0.63 17.81 16 35 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -71.63 274.70 -0.18 -71.81 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: -0.21 Total: 31.75 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 2.44 Total: -21.90 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.28 Total: -56.51 kcal Atomic # 8 Polarization: -68.09 SS G_CDS: -4.72 Total: -72.80 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -71.63 -0.18 -71.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307751974.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.587 kcal (2) G-P(sol) polarization free energy of solvation -71.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds