Wall clock time and date at job start Mon Mar 30 2020 03:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 120.00256 * 2 1 4 4 C 1.50697 * 109.46869 * 90.00138 * 3 2 1 5 5 H 1.08000 * 120.00325 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00249 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99686 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00300 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47298 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47188 * 120.00287 * 8 6 4 11 11 H 1.48502 * 109.47443 * 240.00312 * 8 6 4 12 12 C 1.34779 * 119.99826 * 180.28066 * 2 1 3 13 13 O 1.21279 * 119.99780 * 185.11957 * 12 2 1 14 14 C 1.50702 * 120.00149 * 5.12520 * 12 2 1 15 15 H 1.09003 * 109.46869 * 344.64380 * 14 12 2 16 16 F 1.39895 * 109.47134 * 104.64505 * 14 12 2 17 17 C 1.52995 * 109.46748 * 224.64785 * 14 12 2 18 18 C 1.53932 * 113.73407 * 276.72149 * 17 14 12 19 19 N 1.47961 * 86.18527 * 221.92206 * 18 17 14 20 20 C 1.47963 * 90.75913 * 24.68941 * 19 18 17 21 21 H 1.08997 * 109.47099 * 95.18205 * 1 2 3 22 22 H 1.09001 * 109.46891 * 215.18331 * 1 2 3 23 23 H 1.09000 * 109.46568 * 335.17793 * 1 2 3 24 24 H 1.08992 * 109.47332 * 210.00489 * 3 2 1 25 25 H 1.08999 * 109.46754 * 330.00736 * 3 2 1 26 26 H 0.97003 * 120.00178 * 179.97438 * 7 6 4 27 27 H 1.09003 * 112.94570 * 48.43236 * 17 14 12 28 28 H 1.09004 * 113.76280 * 336.24551 * 18 17 14 29 29 H 1.09006 * 113.75703 * 107.60295 * 18 17 14 30 30 H 1.00896 * 111.00082 * 271.80272 * 19 18 17 31 31 H 1.09000 * 113.75876 * 220.99055 * 20 19 18 32 32 H 1.09002 * 113.75535 * 89.62845 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 1.4208 5 1 2.0982 1.0957 2.2417 6 6 3.1261 2.8778 1.6729 7 7 3.5526 3.6185 0.6732 8 14 3.4381 3.4166 3.4340 9 1 2.8621 2.4155 4.3673 10 1 4.9008 3.5255 3.6666 11 1 2.8000 4.7369 3.6682 12 6 2.1389 -1.1672 -0.0057 13 8 3.3481 -1.1698 0.0880 14 6 1.3899 -2.4691 -0.1287 15 1 0.3318 -2.2998 0.0708 16 9 1.5451 -2.9759 -1.4234 17 6 1.9450 -3.4742 0.8824 18 6 3.2049 -4.2120 0.3948 19 7 2.5989 -5.4283 0.9801 20 6 1.2462 -4.8452 0.8408 21 1 -0.3633 -0.0928 -1.0234 22 1 -0.3633 -0.8399 0.5921 23 1 -0.3632 0.9328 0.4314 24 1 3.1499 1.1384 -0.5139 25 1 1.6085 2.0284 -0.5137 26 1 4.0289 4.4448 0.8505 27 1 2.0382 -3.0597 1.8863 28 1 3.3007 -4.2476 -0.6904 29 1 4.1206 -3.8941 0.8935 30 1 2.8519 -5.5267 1.9518 31 1 0.5968 -5.0333 1.6958 32 1 0.7690 -5.0660 -0.1140 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308483190.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:06 Heat of formation + Delta-G solvation = -42.184272 kcal Electronic energy + Delta-G solvation = -16534.600239 eV Core-core repulsion = 13639.170996 eV Total energy + Delta-G solvation = -2895.429243 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.73237 -39.52557 -38.55543 -34.98879 -32.73054 -30.45067 -27.88480 -26.12145 -25.98014 -24.74214 -22.52238 -20.07206 -18.87643 -17.15134 -16.79664 -16.59668 -16.04084 -15.87946 -15.03609 -14.42038 -14.06682 -13.53980 -13.43795 -12.80076 -12.58909 -12.48911 -12.35844 -12.22155 -12.10305 -11.70053 -11.31960 -11.00174 -10.90810 -10.72034 -10.55147 -10.23216 -9.69906 -9.00807 -8.53398 -8.49818 -7.79276 -6.11159 -4.16450 3.08745 3.25008 3.32816 3.35896 3.59358 3.93054 4.29795 4.39401 4.55172 4.75005 4.85040 5.14425 5.21962 5.23851 5.38832 5.50713 5.67731 5.76941 5.83327 5.89166 5.92362 6.09487 6.22663 6.90476 7.22703 7.32115 7.39402 7.83966 8.14045 8.20963 8.74745 8.90862 9.48682 10.97128 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.035431 B = 0.006941 C = 0.006431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.076846 B = 4032.885139 C = 4353.012117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.595 5.595 3 C 0.244 3.756 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.484 3.516 13 O -0.518 6.518 14 C 0.081 3.919 15 H 0.100 0.900 16 F -0.191 7.191 17 C -0.175 4.175 18 C 0.037 3.963 19 N -0.662 5.662 20 C 0.025 3.975 21 H 0.048 0.952 22 H 0.056 0.944 23 H 0.081 0.919 24 H 0.044 0.956 25 H 0.036 0.964 26 H 0.264 0.736 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.335 0.665 31 H 0.075 0.925 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.847 -12.086 0.423 14.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.327 5.327 3 C 0.125 3.875 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.209 1.209 12 C 0.267 3.733 13 O -0.394 6.394 14 C 0.041 3.959 15 H 0.118 0.882 16 F -0.172 7.172 17 C -0.195 4.195 18 C -0.092 4.092 19 N -0.288 5.288 20 C -0.105 4.105 21 H 0.067 0.933 22 H 0.075 0.925 23 H 0.100 0.900 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.098 0.902 30 H 0.149 0.851 31 H 0.094 0.906 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.017 -12.537 -0.181 14.368 hybrid contribution -0.039 1.343 1.627 2.110 sum -7.056 -11.194 1.445 13.311 Atomic orbital electron populations 1.21758 0.81234 1.03042 1.00547 1.48246 1.06356 1.07765 1.70346 1.19375 0.92557 0.77800 0.97761 1.21425 1.36750 1.06324 0.92120 0.92398 1.24948 0.95278 0.96353 0.97550 1.69941 1.38281 1.14298 1.30728 0.86422 0.78148 0.78332 0.84390 1.19842 1.20807 1.20875 1.20529 0.88474 0.85106 0.79200 1.90695 1.13746 1.86667 1.48251 1.21637 1.01758 0.92726 0.79804 0.88200 1.92818 1.97221 1.88137 1.39016 1.24796 0.98788 0.95675 1.00283 1.23565 0.96167 0.87213 1.02286 1.65090 1.04074 1.38043 1.21564 1.23715 0.93114 0.90692 1.03021 0.93301 0.92513 0.90012 0.93815 0.94644 0.92657 0.87318 0.87679 0.90154 0.85070 0.90641 0.88127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 9.92 59.85 0.59 1.78 16 2 N -0.59 -12.45 2.86 -182.95 -0.52 -12.98 16 3 C 0.24 6.32 5.10 -5.19 -0.03 6.29 16 4 C -0.53 -14.75 9.39 -34.44 -0.32 -15.08 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.48 9.97 7.00 -10.98 -0.08 9.89 16 13 O -0.52 -12.83 15.88 5.56 0.09 -12.74 16 14 C 0.08 1.24 3.43 -27.88 -0.10 1.14 16 15 H 0.10 1.22 5.57 -51.93 -0.29 0.93 16 16 F -0.19 -3.10 15.51 2.25 0.03 -3.06 16 17 C -0.18 -2.37 3.53 -89.69 -0.32 -2.69 16 18 C 0.04 0.53 7.85 -2.77 -0.02 0.51 16 19 N -0.66 -8.08 8.56 -116.99 -1.00 -9.08 16 20 C 0.02 0.27 8.39 -2.76 -0.02 0.25 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.68 6.27 -51.93 -0.33 0.36 16 23 H 0.08 1.26 8.03 -51.93 -0.42 0.84 16 24 H 0.04 1.28 7.49 -51.93 -0.39 0.89 16 25 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 26 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.11 1.62 7.13 -51.93 -0.37 1.25 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.34 3.50 8.89 -39.29 -0.35 3.16 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 1.10 7.90 -51.93 -0.41 0.69 16 LS Contribution 275.06 15.07 4.15 4.15 Total: -1.00 -32.47 275.06 -6.13 -38.61 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -4.21 Total: 0.43 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -0.39 Total: 3.72 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.79 Total: -47.67 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.03 Total: -3.06 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.47 -6.13 -38.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308483190.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.577 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds