Wall clock time and date at job start Mon Mar 30 2020 03:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 120.00256 * 2 1 4 4 C 1.50697 * 109.46869 * 90.00138 * 3 2 1 5 5 H 1.08000 * 120.00325 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00249 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99686 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00300 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47298 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47188 * 120.00287 * 8 6 4 11 11 H 1.48502 * 109.47443 * 240.00312 * 8 6 4 12 12 C 1.34779 * 119.99826 * 180.28066 * 2 1 3 13 13 O 1.21279 * 119.99780 * 185.11957 * 12 2 1 14 14 C 1.50702 * 120.00149 * 5.12520 * 12 2 1 15 15 H 1.09003 * 109.46869 * 344.64380 * 14 12 2 16 16 F 1.39895 * 109.47134 * 104.64505 * 14 12 2 17 17 C 1.52995 * 109.46748 * 224.64785 * 14 12 2 18 18 C 1.53932 * 113.73407 * 276.72149 * 17 14 12 19 19 N 1.47961 * 86.18527 * 221.92206 * 18 17 14 20 20 C 1.47963 * 90.75913 * 24.68941 * 19 18 17 21 21 H 1.08997 * 109.47099 * 95.18205 * 1 2 3 22 22 H 1.09001 * 109.46891 * 215.18331 * 1 2 3 23 23 H 1.09000 * 109.46568 * 335.17793 * 1 2 3 24 24 H 1.08992 * 109.47332 * 210.00489 * 3 2 1 25 25 H 1.08999 * 109.46754 * 330.00736 * 3 2 1 26 26 H 0.97003 * 120.00178 * 179.97438 * 7 6 4 27 27 H 1.09003 * 112.94570 * 48.43236 * 17 14 12 28 28 H 1.09004 * 113.76280 * 336.24551 * 18 17 14 29 29 H 1.09006 * 113.75703 * 107.60295 * 18 17 14 30 30 H 1.00896 * 111.00082 * 271.80272 * 19 18 17 31 31 H 1.09000 * 113.75876 * 220.99055 * 20 19 18 32 32 H 1.09002 * 113.75535 * 89.62845 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 1.4208 5 1 2.0982 1.0957 2.2417 6 6 3.1261 2.8778 1.6729 7 7 3.5526 3.6185 0.6732 8 14 3.4381 3.4166 3.4340 9 1 2.8621 2.4155 4.3673 10 1 4.9008 3.5255 3.6666 11 1 2.8000 4.7369 3.6682 12 6 2.1389 -1.1672 -0.0057 13 8 3.3481 -1.1698 0.0880 14 6 1.3899 -2.4691 -0.1287 15 1 0.3318 -2.2998 0.0708 16 9 1.5451 -2.9759 -1.4234 17 6 1.9450 -3.4742 0.8824 18 6 3.2049 -4.2120 0.3948 19 7 2.5989 -5.4283 0.9801 20 6 1.2462 -4.8452 0.8408 21 1 -0.3633 -0.0928 -1.0234 22 1 -0.3633 -0.8399 0.5921 23 1 -0.3632 0.9328 0.4314 24 1 3.1499 1.1384 -0.5139 25 1 1.6085 2.0284 -0.5137 26 1 4.0289 4.4448 0.8505 27 1 2.0382 -3.0597 1.8863 28 1 3.3007 -4.2476 -0.6904 29 1 4.1206 -3.8941 0.8935 30 1 2.8519 -5.5267 1.9518 31 1 0.5968 -5.0333 1.6958 32 1 0.7690 -5.0660 -0.1140 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308483190.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:06 Heat of formation + Delta-G solvation = -67.286764 kcal Electronic energy + Delta-G solvation = -16535.688764 eV Core-core repulsion = 13639.170996 eV Total energy + Delta-G solvation = -2896.517769 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.00136 -40.83808 -39.91745 -36.73324 -34.80411 -31.82231 -29.67289 -27.51860 -26.99106 -26.25966 -24.29339 -21.17349 -20.39179 -18.79950 -18.50941 -17.95848 -17.30704 -17.23270 -16.69420 -16.17873 -15.60349 -15.12696 -14.49551 -14.23808 -13.93746 -13.83598 -13.65711 -13.57094 -13.56256 -13.23356 -13.06224 -12.81227 -12.59549 -12.25129 -11.95049 -11.75782 -11.70614 -10.68394 -10.57738 -9.57933 -9.50233 -8.26135 -6.41168 1.35100 1.37548 1.48032 1.51555 2.06949 2.37254 2.93284 3.04036 3.19067 3.40516 3.49939 3.68150 4.05363 4.17547 4.33912 4.51140 4.65797 4.68344 4.77188 4.77686 4.90318 4.93679 4.95836 5.14955 5.17641 5.48187 5.74278 5.99957 6.35115 6.55300 6.68500 7.15709 7.32313 8.81662 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.035431 B = 0.006941 C = 0.006431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.076846 B = 4032.885139 C = 4353.012117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.602 5.602 3 C 0.257 3.743 4 C -0.541 4.541 5 H 0.056 0.944 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.265 1.265 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.471 3.529 13 O -0.573 6.573 14 C 0.095 3.905 15 H 0.143 0.857 16 F -0.195 7.195 17 C -0.177 4.177 18 C 0.029 3.971 19 N -0.664 5.664 20 C 0.041 3.959 21 H 0.074 0.926 22 H 0.097 0.903 23 H 0.077 0.923 24 H -0.004 1.004 25 H 0.029 0.971 26 H 0.268 0.732 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.346 0.654 31 H 0.108 0.892 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.997 -13.293 1.868 16.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.333 5.333 3 C 0.135 3.865 4 C -0.580 4.580 5 H 0.075 0.925 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.189 1.189 10 H -0.209 1.209 11 H -0.194 1.194 12 C 0.257 3.743 13 O -0.452 6.452 14 C 0.055 3.945 15 H 0.161 0.839 16 F -0.176 7.176 17 C -0.198 4.198 18 C -0.101 4.101 19 N -0.291 5.291 20 C -0.088 4.088 21 H 0.093 0.907 22 H 0.115 0.885 23 H 0.095 0.905 24 H 0.014 0.986 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.127 0.873 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.161 0.839 31 H 0.126 0.874 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.224 -13.768 1.261 16.620 hybrid contribution 0.638 1.711 1.117 2.141 sum -8.586 -12.057 2.379 14.991 Atomic orbital electron populations 1.22113 0.77443 1.04658 1.03037 1.48290 1.08751 1.06286 1.70011 1.18851 0.91068 0.80144 0.96395 1.21696 1.36937 1.06530 0.92826 0.92539 1.25891 0.94859 0.96432 1.02086 1.70061 1.38932 1.14823 1.33100 0.85335 0.77833 0.78487 0.78956 1.18889 1.20903 1.19358 1.21605 0.88271 0.86711 0.77696 1.90662 1.16424 1.87698 1.50459 1.21678 1.03101 0.89708 0.79980 0.83937 1.92817 1.97350 1.87872 1.39580 1.24903 0.98843 0.96435 0.99579 1.23455 0.96340 0.88953 1.01368 1.65056 1.04812 1.36842 1.22405 1.23768 0.92712 0.87615 1.04724 0.90745 0.88461 0.90459 0.98590 0.95351 0.92337 0.87310 0.89264 0.91728 0.83853 0.87363 0.87659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.91 9.92 127.77 1.27 3.18 16 2 N -0.60 -25.04 2.86 -851.13 -2.43 -27.47 16 3 C 0.26 13.75 5.10 85.63 0.44 14.19 16 4 C -0.54 -30.75 9.39 25.60 0.24 -30.51 16 5 H 0.06 3.15 7.81 -2.91 -0.02 3.12 16 6 C 0.01 0.36 5.46 84.65 0.46 0.82 16 7 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 8 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 9 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 11 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 12 C 0.47 19.39 7.00 87.66 0.61 20.01 16 13 O -0.57 -29.48 15.88 -3.03 -0.05 -29.53 16 14 C 0.10 2.68 3.43 29.85 0.10 2.78 16 15 H 0.14 2.80 5.57 -2.39 -0.01 2.78 16 16 F -0.20 -5.99 15.51 44.97 0.70 -5.29 16 17 C -0.18 -4.43 3.53 -10.15 -0.04 -4.47 16 18 C 0.03 0.81 7.85 86.40 0.68 1.49 16 19 N -0.66 -14.82 8.56 -524.06 -4.48 -19.30 16 20 C 0.04 0.75 8.39 86.41 0.72 1.48 16 21 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.10 1.90 6.27 -2.39 -0.01 1.88 16 23 H 0.08 2.23 8.03 -2.39 -0.02 2.21 16 24 H 0.00 -0.25 7.49 -2.39 -0.02 -0.27 16 25 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 26 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 27 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.09 2.79 7.13 -2.38 -0.02 2.77 16 29 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.35 6.46 8.89 -89.70 -0.80 5.67 16 31 H 0.11 1.32 8.14 -2.39 -0.02 1.31 16 32 H 0.11 1.87 7.90 -2.39 -0.02 1.86 16 Total: -1.00 -73.34 275.06 0.87 -72.48 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.33 Total: 9.55 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 4.49 Total: 8.97 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -6.63 Total: -102.48 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.05 Total: -29.53 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 0.70 Total: -5.29 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -73.34 0.87 -72.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308483190.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.190 kcal (2) G-P(sol) polarization free energy of solvation -73.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds