Wall clock time and date at job start Mon Mar 30 2020 03:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47268 * 2 1 4 4 C 1.53002 * 109.46821 * 119.99738 * 2 1 3 5 5 C 1.47201 * 109.47088 * 184.99429 * 4 2 1 6 6 N 3.43548 * 154.82359 * 111.57121 * 2 1 3 7 7 N 1.46504 * 109.46734 * 239.99369 * 2 1 3 8 8 C 1.39680 * 119.99387 * 85.00868 * 7 2 1 9 9 C 1.39329 * 119.95543 * 359.97438 * 8 7 2 10 10 C 1.38484 * 120.42635 * 180.02562 * 9 8 7 11 11 C 1.37691 * 120.32447 * 0.25938 * 10 9 8 12 12 C 1.40752 * 119.88707 * 359.45163 * 11 10 9 13 13 C 1.41412 * 120.20478 * 180.27345 * 12 11 10 14 14 H 1.08000 * 120.00187 * 204.64344 * 13 12 11 15 15 C 1.39926 * 120.00070 * 24.63317 * 13 12 11 16 16 N 1.30828 * 120.00037 * 17.72791 * 15 13 12 17 17 Si 1.86798 * 120.00135 * 197.71845 * 15 13 12 18 18 H 1.48509 * 109.46976 * 90.00467 * 17 15 13 19 19 H 1.48495 * 109.47411 * 210.00234 * 17 15 13 20 20 H 1.48503 * 109.47283 * 330.00668 * 17 15 13 21 21 C 1.38281 * 119.94907 * 180.02562 * 8 7 2 22 22 H 1.09001 * 109.47795 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47245 * 300.00398 * 1 2 3 24 24 H 1.09002 * 109.47198 * 60.00039 * 1 2 3 25 25 H 1.08994 * 109.47401 * 304.99779 * 4 2 1 26 26 H 1.09008 * 109.47326 * 65.00006 * 4 2 1 27 27 H 0.96996 * 119.99929 * 264.99818 * 7 2 1 28 28 H 1.08000 * 119.79248 * 0.03185 * 9 8 7 29 29 H 1.07993 * 119.84157 * 179.97438 * 10 9 8 30 30 H 1.07991 * 120.05580 * 179.71947 * 11 10 9 31 31 H 0.97001 * 120.00359 * 179.97438 * 16 15 13 32 32 H 1.08004 * 120.16173 * 359.94475 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5070 -0.6175 1.3113 6 7 4.6391 -0.5373 1.3591 7 7 2.0182 -0.6908 -1.1961 8 6 2.1517 0.0061 -2.3993 9 6 1.8197 1.3578 -2.4609 10 6 1.9478 2.0580 -3.6488 11 6 2.4000 1.4239 -4.7843 12 6 2.7450 0.0602 -4.7358 13 6 3.2156 -0.5963 -5.8965 14 1 3.1057 -1.6663 -5.9939 15 6 3.8236 0.1404 -6.9191 16 7 4.2711 1.3462 -6.6794 17 14 3.9965 -0.5978 -8.6263 18 1 2.7975 -0.2607 -9.4351 19 1 5.2082 -0.0461 -9.2838 20 1 4.1210 -2.0736 -8.5172 21 6 2.6121 -0.6470 -3.5279 22 1 -0.3635 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.6053 -0.2617 2.1370 26 1 1.7515 -1.7715 1.2057 27 1 2.2489 -1.6319 -1.1525 28 1 1.4603 1.8630 -1.5766 29 1 1.6874 3.1054 -3.6860 30 1 2.4939 1.9730 -5.7094 31 1 4.6929 1.8568 -7.3882 32 1 2.8698 -1.6948 -3.4814 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313428044.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:06 Heat of formation + Delta-G solvation = 17.951081 kcal Electronic energy + Delta-G solvation = -15015.623518 eV Core-core repulsion = 12553.571165 eV Total energy + Delta-G solvation = -2462.052354 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.89926 -38.23853 -36.83067 -35.26296 -32.83609 -31.65170 -28.99326 -28.57580 -27.08789 -23.26403 -22.56355 -21.40716 -19.23165 -18.63444 -17.43327 -16.80011 -16.56563 -16.24230 -15.22737 -14.92104 -14.72739 -14.40986 -14.25644 -13.92847 -13.78856 -13.36498 -13.09840 -12.84829 -12.77779 -12.62957 -12.46542 -12.34142 -12.09723 -11.71786 -11.56688 -11.15994 -11.05038 -10.46007 -9.32105 -8.60834 -7.90367 -6.32381 1.05853 1.35695 1.38330 1.51139 1.60266 1.84036 1.89649 2.22082 2.80849 2.81800 3.17055 3.86813 3.97568 4.30388 4.51820 4.54670 4.75299 4.78398 4.89519 5.03055 5.13326 5.17190 5.20642 5.31559 5.44527 5.58814 5.62469 5.97118 6.03946 6.22179 6.33310 6.63257 6.69676 6.91663 7.03068 7.09505 7.27642 8.37552 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037178 B = 0.005862 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.944465 B = 4775.415377 C = 5011.446336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.152 3.848 3 H 0.068 0.932 4 C -0.024 4.024 5 C 0.231 3.769 6 N -0.511 5.511 7 N -0.751 5.751 8 C 0.238 3.762 9 C -0.299 4.299 10 C -0.078 4.078 11 C -0.235 4.235 12 C 0.109 3.891 13 C -0.505 4.505 14 H 0.071 0.929 15 C 0.034 3.966 16 N -0.827 5.827 17 Si 0.983 3.017 18 H -0.260 1.260 19 H -0.268 1.268 20 H -0.259 1.259 21 C -0.314 4.314 22 H 0.071 0.929 23 H 0.095 0.905 24 H 0.039 0.961 25 H 0.168 0.832 26 H 0.143 0.857 27 H 0.395 0.605 28 H 0.120 0.880 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.286 0.714 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.835 -2.917 11.604 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.086 0.914 4 C -0.064 4.064 5 C -0.086 4.086 6 N -0.189 5.189 7 N -0.384 5.384 8 C 0.137 3.863 9 C -0.322 4.322 10 C -0.097 4.097 11 C -0.256 4.256 12 C 0.107 3.893 13 C -0.534 4.534 14 H 0.089 0.911 15 C -0.180 4.180 16 N -0.453 5.453 17 Si 0.803 3.197 18 H -0.185 1.185 19 H -0.193 1.193 20 H -0.183 1.183 21 C -0.338 4.338 22 H 0.090 0.910 23 H 0.114 0.886 24 H 0.059 0.941 25 H 0.185 0.815 26 H 0.160 0.840 27 H 0.230 0.770 28 H 0.138 0.862 29 H 0.125 0.875 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.070 -2.463 11.736 13.920 hybrid contribution 0.253 -0.438 -1.182 1.285 sum -6.817 -2.902 10.554 12.895 Atomic orbital electron populations 1.22199 0.93161 1.03412 1.02875 1.20928 0.95273 0.96462 0.82780 0.91407 1.20037 0.78887 1.06557 1.00892 1.29998 0.96159 0.91375 0.91057 1.81248 1.15644 1.10947 1.11046 1.44678 1.75045 1.11841 1.06824 1.17453 0.91954 0.91253 0.85638 1.20225 1.20064 0.93492 0.98449 1.20758 0.97533 0.98142 0.93243 1.21097 1.10025 0.96364 0.98106 1.17725 0.87161 0.92443 0.92017 1.19812 1.36054 0.95426 1.02157 0.91094 1.26777 0.92044 0.94808 1.04375 1.69929 1.27844 1.12086 1.35469 0.85207 0.78764 0.79466 0.76226 1.18480 1.19307 1.18289 1.20529 1.20687 0.99318 0.93275 0.91013 0.88584 0.94134 0.81480 0.83971 0.77048 0.86223 0.87537 0.88886 0.90368 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.42 71.98 0.68 -1.83 16 2 C 0.15 3.06 2.24 44.99 0.10 3.16 16 3 H 0.07 1.62 6.47 -2.39 -0.02 1.60 16 4 C -0.02 -0.28 5.25 28.79 0.15 -0.13 16 5 C 0.23 5.50 15.14 89.44 1.35 6.85 16 6 N -0.51 -16.91 18.54 20.01 0.37 -16.54 16 7 N -0.75 -22.78 4.95 -319.12 -1.58 -24.36 16 8 C 0.24 10.22 6.63 38.16 0.25 10.47 16 9 C -0.30 -12.87 8.85 22.59 0.20 -12.67 16 10 C -0.08 -3.75 10.02 22.20 0.22 -3.52 16 11 C -0.24 -13.09 8.69 22.75 0.20 -12.89 16 12 C 0.11 6.25 5.57 -21.31 -0.12 6.13 16 13 C -0.50 -28.81 9.05 23.46 0.21 -28.60 16 14 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 15 C 0.03 1.83 5.14 85.25 0.44 2.27 16 16 N -0.83 -45.85 10.96 21.82 0.24 -45.61 16 17 Si 0.98 40.10 29.59 68.60 2.03 42.13 16 18 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 19 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 20 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 21 C -0.31 -15.99 9.63 22.86 0.22 -15.77 16 22 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 23 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 24 H 0.04 0.91 7.69 -2.39 -0.02 0.90 16 25 H 0.17 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.14 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.40 10.93 8.61 -92.71 -0.80 10.13 16 28 H 0.12 4.31 6.07 -2.91 -0.02 4.29 16 29 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 30 H 0.09 5.44 6.16 -2.92 -0.02 5.43 16 31 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 32 H 0.09 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -73.27 280.88 5.31 -67.96 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.34 Total: 22.95 kcal Atomic # 6 Polarization: -50.44 SS G_CDS: 3.91 Total: -46.53 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -0.97 Total: -86.51 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -73.27 5.31 -67.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313428044.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.911 kcal (2) G-P(sol) polarization free energy of solvation -73.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds