Wall clock time and date at job start Mon Mar 30 2020 03:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46887 * 2 1 4 4 C 1.50697 * 109.47332 * 240.00187 * 2 1 3 5 5 H 1.08008 * 120.00029 * 239.99811 * 4 2 1 6 6 C 1.37879 * 120.00216 * 59.99853 * 4 2 1 7 7 N 1.31517 * 119.99844 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99990 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47190 * 90.00137 * 8 6 4 10 10 H 1.48497 * 109.46895 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47033 * 329.99829 * 8 6 4 12 12 N 1.46496 * 109.47054 * 119.99740 * 2 1 3 13 13 C 1.34774 * 120.00346 * 274.99816 * 12 2 1 14 14 O 1.21283 * 120.00059 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00206 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.47152 * 15.00341 * 15 13 12 17 17 F 1.39904 * 109.46969 * 255.00270 * 15 13 12 18 18 C 1.53000 * 109.46912 * 135.00569 * 15 13 12 19 19 C 1.53935 * 113.73273 * 163.77164 * 18 15 13 20 20 N 1.48188 * 86.09935 * 221.95667 * 19 18 15 21 21 C 1.47960 * 90.80257 * 24.59580 * 20 19 18 22 22 H 1.09000 * 109.47639 * 300.00037 * 1 2 3 23 23 H 1.09000 * 109.47044 * 60.00194 * 1 2 3 24 24 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 25 25 H 0.96998 * 119.99584 * 179.97438 * 7 6 4 26 26 H 0.97004 * 120.00234 * 95.00563 * 12 2 1 27 27 H 1.08997 * 112.93751 * 295.33043 * 18 15 13 28 28 H 1.09008 * 113.75899 * 336.23003 * 19 18 15 29 29 H 1.08998 * 113.76542 * 107.59833 * 19 18 15 30 30 H 1.00899 * 111.07769 * 137.52354 * 20 19 18 31 31 H 1.08993 * 113.76019 * 221.08866 * 21 20 19 32 32 H 1.09000 * 113.85529 * 89.73091 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.3429 -2.1617 -4.4119 10 1 2.4866 -0.1413 -5.1122 11 1 3.6294 -1.7582 -3.7121 12 7 2.0182 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8582 1.1585 2.4117 15 6 2.6488 -0.7287 3.5878 16 1 3.1010 -1.6780 3.3003 17 9 1.5792 -0.9662 4.4578 18 6 3.6931 0.1421 4.2892 19 6 3.9829 -0.2851 5.7394 20 7 3.9763 1.1617 6.0599 21 6 3.1181 1.4388 4.8870 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 0.7087 1.1612 -3.4844 26 1 2.2490 -1.6317 1.1527 27 1 4.5902 0.2955 3.6896 28 1 3.1689 -0.8415 6.2044 29 1 4.9546 -0.7610 5.8713 30 1 3.4812 1.3404 6.9207 31 1 3.4002 2.3378 4.3390 32 1 2.0503 1.3883 5.1002 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379526673.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:55 Heat of formation + Delta-G solvation = -59.325506 kcal Electronic energy + Delta-G solvation = -16384.781104 eV Core-core repulsion = 13488.608561 eV Total energy + Delta-G solvation = -2896.172543 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.80397 -39.43119 -38.41585 -34.89907 -32.51227 -30.67004 -28.74249 -26.02006 -25.35967 -24.97023 -21.35586 -19.71823 -19.43772 -17.71643 -17.06091 -16.65836 -15.98879 -15.29426 -14.87832 -14.49100 -14.04761 -13.60185 -13.45814 -13.26877 -12.73422 -12.48382 -12.03864 -11.73348 -11.50589 -11.16727 -10.99542 -10.93574 -10.81419 -10.56399 -10.35815 -10.28311 -9.14692 -9.10614 -8.91253 -8.61678 -8.05153 -6.17471 -4.27502 3.06082 3.21504 3.28351 3.30226 3.65689 3.96985 4.28901 4.43116 4.61772 4.85036 4.93572 5.14804 5.27277 5.30344 5.40392 5.63351 5.66475 6.00336 6.04140 6.19210 6.75876 6.89824 7.07667 7.15953 7.32061 7.45148 7.61671 7.83148 8.07933 8.49738 8.67713 8.93154 9.39877 10.88491 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.050317 B = 0.005837 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.343712 B = 4796.027625 C = 4880.202760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.698 5.698 13 C 0.482 3.518 14 O -0.532 6.532 15 C 0.082 3.918 16 H 0.099 0.901 17 F -0.195 7.195 18 C -0.134 4.134 19 C 0.011 3.989 20 N -0.641 5.641 21 C 0.030 3.970 22 H 0.015 0.985 23 H 0.091 0.909 24 H 0.027 0.973 25 H 0.265 0.735 26 H 0.390 0.610 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.317 0.683 31 H 0.094 0.906 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.079 -4.534 11.923 13.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.069 0.931 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.346 5.346 13 C 0.264 3.736 14 O -0.410 6.410 15 C 0.042 3.958 16 H 0.116 0.884 17 F -0.176 7.176 18 C -0.153 4.153 19 C -0.120 4.120 20 N -0.265 5.265 21 C -0.100 4.100 22 H 0.034 0.966 23 H 0.110 0.890 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.223 0.777 27 H 0.135 0.865 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.129 0.871 31 H 0.113 0.887 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.531 -3.238 11.618 12.884 hybrid contribution -0.638 -1.373 -0.678 1.658 sum 3.893 -4.611 10.940 12.494 Atomic orbital electron populations 1.22081 0.98251 0.99262 1.01020 1.18825 0.91194 0.94061 0.79778 0.93141 1.21194 1.32695 1.13327 0.90242 0.91997 1.24894 0.94746 0.94919 0.99112 1.69900 1.35711 1.22376 1.24005 0.86420 0.79163 0.79269 0.82089 1.20502 1.21018 1.19824 1.46638 1.63910 1.13570 1.10484 1.20567 0.80098 0.88035 0.84939 1.90678 1.49997 1.15604 1.84687 1.21588 0.85511 1.00517 0.88186 0.88360 1.92819 1.58404 1.95627 1.70733 1.23495 0.98783 0.96646 0.96403 1.23776 1.02158 0.91908 0.94120 1.66967 1.43915 1.10506 1.05140 1.23555 0.96620 0.98427 0.91371 0.96599 0.89000 0.95370 0.92482 0.77681 0.86537 0.90864 0.89200 0.87055 0.88726 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.15 0.34 -3.31 16 2 C 0.26 6.57 2.56 -69.09 -0.18 6.40 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 4 C -0.54 -13.93 8.73 -34.44 -0.30 -14.23 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.58 11.32 55.43 0.63 -23.95 16 8 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 12 N -0.70 -14.13 5.07 -54.94 -0.28 -14.41 16 13 C 0.48 9.32 7.13 -10.99 -0.08 9.24 16 14 O -0.53 -12.20 15.03 5.56 0.08 -12.12 16 15 C 0.08 1.19 3.88 -27.88 -0.11 1.08 16 16 H 0.10 1.10 7.99 -51.93 -0.42 0.69 16 17 F -0.19 -3.00 15.47 2.25 0.03 -2.97 16 18 C -0.13 -1.78 3.83 -89.69 -0.34 -2.12 16 19 C 0.01 0.12 8.37 -2.63 -0.02 0.10 16 20 N -0.64 -7.87 8.53 -116.84 -1.00 -8.86 16 21 C 0.03 0.43 6.83 -2.76 -0.02 0.41 16 22 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.39 6.71 8.43 -40.82 -0.34 6.36 16 27 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.07 0.77 7.34 -51.92 -0.38 0.39 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.32 3.34 8.92 -39.29 -0.35 2.98 16 31 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.07 1.13 7.66 -51.93 -0.40 0.73 16 LS Contribution 272.92 15.07 4.11 4.11 Total: -1.00 -29.74 272.92 -6.49 -36.23 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -4.25 Total: 7.46 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -0.80 Total: -0.78 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: -0.65 Total: -47.22 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.08 Total: -12.12 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.03 Total: -2.97 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.74 -6.49 -36.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379526673.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.099 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds