Wall clock time and date at job start Mon Mar 30 2020 03:02:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09005 * 109.46887 * 2 1
4 4 C 1.50697 * 109.47332 * 240.00187 * 2 1 3
5 5 H 1.08008 * 120.00029 * 239.99811 * 4 2 1
6 6 C 1.37879 * 120.00216 * 59.99853 * 4 2 1
7 7 N 1.31517 * 119.99844 * 359.97438 * 6 4 2
8 8 Si 1.86804 * 119.99990 * 180.02562 * 6 4 2
9 9 H 1.48501 * 109.47190 * 90.00137 * 8 6 4
10 10 H 1.48497 * 109.46895 * 209.99853 * 8 6 4
11 11 H 1.48503 * 109.47033 * 329.99829 * 8 6 4
12 12 N 1.46496 * 109.47054 * 119.99740 * 2 1 3
13 13 C 1.34774 * 120.00346 * 274.99816 * 12 2 1
14 14 O 1.21283 * 120.00059 * 0.02562 * 13 12 2
15 15 C 1.50703 * 120.00206 * 179.97438 * 13 12 2
16 16 H 1.09002 * 109.47152 * 15.00341 * 15 13 12
17 17 F 1.39904 * 109.46969 * 255.00270 * 15 13 12
18 18 C 1.53000 * 109.46912 * 135.00569 * 15 13 12
19 19 C 1.53935 * 113.73273 * 163.77164 * 18 15 13
20 20 N 1.48188 * 86.09935 * 221.95667 * 19 18 15
21 21 C 1.47960 * 90.80257 * 24.59580 * 20 19 18
22 22 H 1.09000 * 109.47639 * 300.00037 * 1 2 3
23 23 H 1.09000 * 109.47044 * 60.00194 * 1 2 3
24 24 H 1.08998 * 109.47247 * 180.02562 * 1 2 3
25 25 H 0.96998 * 119.99584 * 179.97438 * 7 6 4
26 26 H 0.97004 * 120.00234 * 95.00563 * 12 2 1
27 27 H 1.08997 * 112.93751 * 295.33043 * 18 15 13
28 28 H 1.09008 * 113.75899 * 336.23003 * 19 18 15
29 29 H 1.08998 * 113.76542 * 107.59833 * 19 18 15
30 30 H 1.00899 * 111.07769 * 137.52354 * 20 19 18
31 31 H 1.08993 * 113.76019 * 221.08866 * 21 20 19
32 32 H 1.09000 * 113.85529 * 89.73091 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0323 -0.7103 -1.2304
5 1 2.6533 -1.5885 -1.1314
6 6 1.6993 -0.2393 -2.4827
7 7 0.9427 0.8297 -2.6034
8 14 2.3214 -1.1203 -4.0080
9 1 1.3429 -2.1617 -4.4119
10 1 2.4866 -0.1413 -5.1122
11 1 3.6294 -1.7582 -3.7121
12 7 2.0182 -0.6905 1.1962
13 6 2.1470 -0.0182 2.3571
14 8 1.8582 1.1585 2.4117
15 6 2.6488 -0.7287 3.5878
16 1 3.1010 -1.6780 3.3003
17 9 1.5792 -0.9662 4.4578
18 6 3.6931 0.1421 4.2892
19 6 3.9829 -0.2851 5.7394
20 7 3.9763 1.1617 6.0599
21 6 3.1181 1.4388 4.8870
22 1 -0.3634 0.5138 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0276 0.0005
25 1 0.7087 1.1612 -3.4844
26 1 2.2490 -1.6317 1.1527
27 1 4.5902 0.2955 3.6896
28 1 3.1689 -0.8415 6.2044
29 1 4.9546 -0.7610 5.8713
30 1 3.4812 1.3404 6.9207
31 1 3.4002 2.3378 4.3390
32 1 2.0503 1.3883 5.1002
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000379526673.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:02:55
Heat of formation + Delta-G solvation = -59.325506 kcal
Electronic energy + Delta-G solvation = -16384.781104 eV
Core-core repulsion = 13488.608561 eV
Total energy + Delta-G solvation = -2896.172543 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 230.117 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-47.80397 -39.43119 -38.41585 -34.89907 -32.51227 -30.67004 -28.74249 -26.02006
-25.35967 -24.97023 -21.35586 -19.71823 -19.43772 -17.71643 -17.06091 -16.65836
-15.98879 -15.29426 -14.87832 -14.49100 -14.04761 -13.60185 -13.45814 -13.26877
-12.73422 -12.48382 -12.03864 -11.73348 -11.50589 -11.16727 -10.99542 -10.93574
-10.81419 -10.56399 -10.35815 -10.28311 -9.14692 -9.10614 -8.91253 -8.61678
-8.05153 -6.17471 -4.27502 3.06082 3.21504 3.28351 3.30226 3.65689
3.96985 4.28901 4.43116 4.61772 4.85036 4.93572 5.14804 5.27277
5.30344 5.40392 5.63351 5.66475 6.00336 6.04140 6.19210 6.75876
6.89824 7.07667 7.15953 7.32061 7.45148 7.61671 7.83148 8.07933
8.49738 8.67713 8.93154 9.39877 10.88491
Molecular weight = 230.12amu
Principal moments of inertia in cm(-1)
A = 0.050317 B = 0.005837 C = 0.005736
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 556.343712 B = 4796.027625 C = 4880.202760
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.263 3.737
3 H 0.051 0.949
4 C -0.536 4.536
5 H 0.062 0.938
6 C 0.067 3.933
7 N -0.883 5.883
8 Si 0.903 3.097
9 H -0.279 1.279
10 H -0.285 1.285
11 H -0.273 1.273
12 N -0.698 5.698
13 C 0.482 3.518
14 O -0.532 6.532
15 C 0.082 3.918
16 H 0.099 0.901
17 F -0.195 7.195
18 C -0.134 4.134
19 C 0.011 3.989
20 N -0.641 5.641
21 C 0.030 3.970
22 H 0.015 0.985
23 H 0.091 0.909
24 H 0.027 0.973
25 H 0.265 0.735
26 H 0.390 0.610
27 H 0.117 0.883
28 H 0.073 0.927
29 H 0.090 0.910
30 H 0.317 0.683
31 H 0.094 0.906
32 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.079 -4.534 11.923 13.392
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.161 3.839
3 H 0.069 0.931
4 C -0.575 4.575
5 H 0.080 0.920
6 C -0.137 4.137
7 N -0.520 5.520
8 Si 0.731 3.269
9 H -0.205 1.205
10 H -0.210 1.210
11 H -0.198 1.198
12 N -0.346 5.346
13 C 0.264 3.736
14 O -0.410 6.410
15 C 0.042 3.958
16 H 0.116 0.884
17 F -0.176 7.176
18 C -0.153 4.153
19 C -0.120 4.120
20 N -0.265 5.265
21 C -0.100 4.100
22 H 0.034 0.966
23 H 0.110 0.890
24 H 0.046 0.954
25 H 0.075 0.925
26 H 0.223 0.777
27 H 0.135 0.865
28 H 0.091 0.909
29 H 0.108 0.892
30 H 0.129 0.871
31 H 0.113 0.887
32 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 4.531 -3.238 11.618 12.884
hybrid contribution -0.638 -1.373 -0.678 1.658
sum 3.893 -4.611 10.940 12.494
Atomic orbital electron populations
1.22081 0.98251 0.99262 1.01020 1.18825 0.91194 0.94061 0.79778
0.93141 1.21194 1.32695 1.13327 0.90242 0.91997 1.24894 0.94746
0.94919 0.99112 1.69900 1.35711 1.22376 1.24005 0.86420 0.79163
0.79269 0.82089 1.20502 1.21018 1.19824 1.46638 1.63910 1.13570
1.10484 1.20567 0.80098 0.88035 0.84939 1.90678 1.49997 1.15604
1.84687 1.21588 0.85511 1.00517 0.88186 0.88360 1.92819 1.58404
1.95627 1.70733 1.23495 0.98783 0.96646 0.96403 1.23776 1.02158
0.91908 0.94120 1.66967 1.43915 1.10506 1.05140 1.23555 0.96620
0.98427 0.91371 0.96599 0.89000 0.95370 0.92482 0.77681 0.86537
0.90864 0.89200 0.87055 0.88726 0.90728
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.66 9.26 37.15 0.34 -3.31 16
2 C 0.26 6.57 2.56 -69.09 -0.18 6.40 16
3 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16
4 C -0.54 -13.93 8.73 -34.44 -0.30 -14.23 16
5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16
6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16
7 N -0.88 -24.58 11.32 55.43 0.63 -23.95 16
8 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16
9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16
12 N -0.70 -14.13 5.07 -54.94 -0.28 -14.41 16
13 C 0.48 9.32 7.13 -10.99 -0.08 9.24 16
14 O -0.53 -12.20 15.03 5.56 0.08 -12.12 16
15 C 0.08 1.19 3.88 -27.88 -0.11 1.08 16
16 H 0.10 1.10 7.99 -51.93 -0.42 0.69 16
17 F -0.19 -3.00 15.47 2.25 0.03 -2.97 16
18 C -0.13 -1.78 3.83 -89.69 -0.34 -2.12 16
19 C 0.01 0.12 8.37 -2.63 -0.02 0.10 16
20 N -0.64 -7.87 8.53 -116.84 -1.00 -8.86 16
21 C 0.03 0.43 6.83 -2.76 -0.02 0.41 16
22 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16
23 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16
24 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16
25 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16
26 H 0.39 6.71 8.43 -40.82 -0.34 6.36 16
27 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16
28 H 0.07 0.77 7.34 -51.92 -0.38 0.39 16
29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16
30 H 0.32 3.34 8.92 -39.29 -0.35 2.98 16
31 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16
32 H 0.07 1.13 7.66 -51.93 -0.40 0.73 16
LS Contribution 272.92 15.07 4.11 4.11
Total: -1.00 -29.74 272.92 -6.49 -36.23
By element:
Atomic # 1 Polarization: 11.71 SS G_CDS: -4.25 Total: 7.46 kcal
Atomic # 6 Polarization: 0.02 SS G_CDS: -0.80 Total: -0.78 kcal
Atomic # 7 Polarization: -46.58 SS G_CDS: -0.65 Total: -47.22 kcal
Atomic # 8 Polarization: -12.20 SS G_CDS: 0.08 Total: -12.12 kcal
Atomic # 9 Polarization: -3.00 SS G_CDS: 0.03 Total: -2.97 kcal
Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal
Total LS contribution 4.11 Total: 4.11 kcal
Total: -29.74 -6.49 -36.23 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379526673.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.099 kcal
(2) G-P(sol) polarization free energy of solvation -29.739 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.837 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.227 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.326 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds