Wall clock time and date at job start Mon Mar 30 2020 03:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21280 * 119.99396 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00292 * 180.02562 * 13 12 2 16 16 H 1.08998 * 109.47236 * 15.00383 * 15 13 12 17 17 F 1.39898 * 109.46915 * 255.00044 * 15 13 12 18 18 C 1.53002 * 109.46818 * 135.00275 * 15 13 12 19 19 C 1.53939 * 113.72962 * 163.76717 * 18 15 13 20 20 N 1.48189 * 86.10044 * 221.95331 * 19 18 15 21 21 C 1.47968 * 90.79818 * 24.60145 * 20 19 18 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 26 26 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 27 27 H 1.08998 * 112.93506 * 295.32752 * 18 15 13 28 28 H 1.08996 * 113.75961 * 336.23639 * 19 18 15 29 29 H 1.09000 * 113.76152 * 107.60309 * 19 18 15 30 30 H 1.00895 * 111.07012 * 137.52069 * 20 19 18 31 31 H 1.09003 * 113.75903 * 221.08506 * 21 20 19 32 32 H 1.08997 * 113.86041 * 89.73337 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 1 2.6013 -1.8064 -3.4299 17 9 3.9729 -0.3520 -3.8365 18 6 1.7769 -0.3501 -4.7865 19 6 2.4131 -0.6884 -6.1469 20 7 1.9094 0.6307 -6.5965 21 6 1.9030 1.1266 -5.2024 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7082 1.1609 3.4844 26 1 2.2490 -1.6318 -1.1526 27 1 0.7465 -0.6915 -4.6871 28 1 3.5006 -0.7567 -6.1182 29 1 1.9459 -1.5336 -6.6522 30 1 2.6014 1.1142 -7.1490 31 1 1.0290 1.7289 -4.9544 32 1 2.8402 1.5909 -4.8953 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379526691.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:57 Heat of formation + Delta-G solvation = -82.743419 kcal Electronic energy + Delta-G solvation = -16387.758349 eV Core-core repulsion = 13490.570330 eV Total energy + Delta-G solvation = -2897.188020 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.01140 -40.76863 -39.75041 -36.76600 -34.40425 -32.07966 -30.42841 -27.36827 -27.01368 -26.24492 -23.08498 -21.42633 -20.53998 -19.32157 -18.24484 -17.85616 -17.70260 -16.99534 -16.19680 -16.14028 -15.51413 -15.15564 -14.65547 -14.50290 -14.38565 -13.87567 -13.74188 -13.26182 -13.03608 -12.88949 -12.78750 -12.50545 -12.29699 -12.13169 -11.99424 -11.61591 -11.12233 -10.69974 -10.56924 -9.95857 -9.85291 -8.19558 -6.37317 1.44146 1.45451 1.52222 1.57607 2.17601 2.44498 2.96184 3.11275 3.33113 3.51302 3.71816 3.77189 4.03436 4.30450 4.41345 4.55023 4.73036 4.80573 4.88892 4.90937 5.04861 5.06480 5.12018 5.39123 5.54953 5.64615 5.85366 6.06999 6.25201 6.69632 6.80650 7.26830 7.41886 8.86938 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.057228 B = 0.005847 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.149431 B = 4787.601622 C = 5023.170388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H -0.002 1.002 4 C -0.547 4.547 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.259 1.259 10 H -0.285 1.285 11 H -0.278 1.278 12 N -0.694 5.694 13 C 0.475 3.525 14 O -0.575 6.575 15 C 0.095 3.905 16 H 0.144 0.856 17 F -0.199 7.199 18 C -0.136 4.136 19 C 0.025 3.975 20 N -0.643 5.643 21 C 0.023 3.977 22 H 0.014 0.986 23 H 0.066 0.934 24 H 0.044 0.956 25 H 0.266 0.734 26 H 0.408 0.592 27 H 0.122 0.878 28 H 0.082 0.918 29 H 0.114 0.886 30 H 0.328 0.672 31 H 0.072 0.928 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.183 -7.435 -13.139 15.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.165 3.835 3 H 0.016 0.984 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.183 1.183 10 H -0.211 1.211 11 H -0.204 1.204 12 N -0.343 5.343 13 C 0.259 3.741 14 O -0.454 6.454 15 C 0.055 3.945 16 H 0.161 0.839 17 F -0.180 7.180 18 C -0.156 4.156 19 C -0.105 4.105 20 N -0.269 5.269 21 C -0.107 4.107 22 H 0.033 0.967 23 H 0.084 0.916 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.244 0.756 27 H 0.140 0.860 28 H 0.100 0.900 29 H 0.132 0.868 30 H 0.141 0.859 31 H 0.091 0.909 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.108 -6.581 -13.273 14.965 hybrid contribution 1.230 0.019 1.420 1.879 sum 3.338 -6.563 -11.853 13.954 Atomic orbital electron populations 1.21887 0.97866 0.99739 0.99717 1.18417 0.91419 0.91929 0.81784 0.98376 1.21574 1.32632 1.13625 0.90711 0.90694 1.25805 0.94831 0.95559 1.02384 1.70056 1.36970 1.23961 1.24622 0.85277 0.78097 0.78505 0.78328 1.18273 1.21111 1.20366 1.46380 1.64030 1.14462 1.09477 1.21521 0.78977 0.87715 0.85869 1.90664 1.51552 1.17722 1.85492 1.21613 0.78083 1.01980 0.92776 0.83862 1.92820 1.36558 1.93693 1.94917 1.23590 1.01074 0.97858 0.93033 1.23817 0.99787 0.94810 0.92037 1.66943 1.45726 1.04598 1.09620 1.23428 1.01550 0.96291 0.89471 0.96660 0.91556 0.93716 0.92514 0.75577 0.85970 0.89955 0.86770 0.85872 0.90896 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.58 9.26 71.98 0.67 -5.91 16 2 C 0.27 13.60 2.56 44.25 0.11 13.72 16 3 H 0.00 -0.10 7.58 -2.39 -0.02 -0.12 16 4 C -0.55 -28.41 8.73 25.60 0.22 -28.19 16 5 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -52.17 11.32 21.45 0.24 -51.93 16 8 Si 0.97 41.39 29.54 68.60 2.03 43.41 16 9 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 10 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 12 N -0.69 -27.54 5.07 -446.09 -2.26 -29.81 16 13 C 0.48 18.12 7.13 87.66 0.63 18.74 16 14 O -0.57 -27.06 15.03 -3.03 -0.05 -27.11 16 15 C 0.10 2.51 3.88 29.85 0.12 2.62 16 16 H 0.14 2.55 7.99 -2.39 -0.02 2.53 16 17 F -0.20 -5.77 15.47 44.97 0.70 -5.08 16 18 C -0.14 -3.29 3.83 -10.15 -0.04 -3.32 16 19 C 0.03 0.47 8.37 86.37 0.72 1.19 16 20 N -0.64 -14.50 8.53 -523.51 -4.47 -18.97 16 21 C 0.02 0.65 6.83 86.41 0.59 1.24 16 22 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 24 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 25 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 26 H 0.41 13.13 8.43 -92.71 -0.78 12.35 16 27 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 28 H 0.08 1.42 7.34 -2.39 -0.02 1.40 16 29 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.33 6.30 8.92 -89.70 -0.80 5.50 16 31 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.06 1.85 7.66 -2.39 -0.02 1.83 16 Total: -1.00 -65.80 272.92 -0.78 -66.58 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -0.44 Total: 21.60 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 3.47 Total: 1.29 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -6.49 Total: -100.70 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.05 Total: -27.11 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.70 Total: -5.08 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Total: -65.80 -0.78 -66.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379526691.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.163 kcal (2) G-P(sol) polarization free energy of solvation -65.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds