Wall clock time and date at job start Mon Mar 30 2020 03:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21280 * 119.99396 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00292 * 180.02562 * 13 12 2 16 16 H 1.09001 * 109.47053 * 345.00002 * 15 13 12 17 17 F 1.39899 * 109.46963 * 105.00201 * 15 13 12 18 18 C 1.52998 * 109.46890 * 224.99834 * 15 13 12 19 19 C 1.53932 * 113.73996 * 276.72618 * 18 15 13 20 20 N 1.47950 * 86.18494 * 221.92346 * 19 18 15 21 21 C 1.47961 * 90.76268 * 24.68861 * 20 19 18 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 26 26 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 27 27 H 1.09004 * 112.93841 * 48.43881 * 18 15 13 28 28 H 1.08995 * 113.75493 * 336.24444 * 19 18 15 29 29 H 1.09005 * 113.75634 * 107.60076 * 19 18 15 30 30 H 1.00901 * 111.00051 * 271.79432 * 20 19 18 31 31 H 1.09002 * 113.75555 * 220.99147 * 21 20 19 32 32 H 1.08998 * 113.75860 * 89.62870 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 1 3.1010 -1.6781 -3.3002 17 9 1.5793 -0.9665 -4.4578 18 6 3.6932 0.1418 -4.2892 19 6 3.0870 1.2109 -5.2161 20 7 4.1612 0.8526 -6.1683 21 6 4.2737 -0.4939 -5.5653 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.9026 -0.5284 4.4375 26 1 2.2490 -1.6318 -1.1526 27 1 4.4511 0.5282 -3.6077 28 1 2.0858 0.9674 -5.5715 29 1 3.1661 2.2259 -4.8264 30 1 4.9934 1.3966 -5.9962 31 1 5.3010 -0.8411 -5.4548 32 1 3.6196 -1.2360 -6.0229 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379526694.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:00 Heat of formation + Delta-G solvation = -47.171089 kcal Electronic energy + Delta-G solvation = -16411.782399 eV Core-core repulsion = 13516.136911 eV Total energy + Delta-G solvation = -2895.645488 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.85066 -39.63319 -38.71006 -35.14284 -32.53708 -30.95619 -29.39964 -26.11372 -25.35703 -24.87805 -21.46824 -20.07878 -19.85290 -17.86933 -16.90851 -16.40036 -16.14359 -16.12213 -15.19530 -14.69515 -13.91665 -13.58342 -13.49530 -12.95911 -12.86361 -12.76091 -12.59188 -12.26600 -11.98507 -11.88533 -11.39037 -11.06809 -10.91008 -10.75384 -10.25909 -9.76697 -9.32398 -9.25837 -8.84054 -8.62726 -8.31859 -6.27830 -4.31280 2.88308 3.18895 3.30811 3.34360 3.49032 3.83936 4.23471 4.25630 4.42860 4.69071 4.92899 5.06680 5.11704 5.14285 5.32654 5.59303 5.69816 5.74676 5.83688 6.11995 6.23334 6.30000 6.48033 6.76437 7.06135 7.14175 7.14639 7.40642 7.99202 8.37863 8.61734 8.73588 9.32169 10.84175 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.049583 B = 0.006220 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.571825 B = 4500.318325 C = 4574.318516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.235 3.765 3 H 0.050 0.950 4 C -0.538 4.538 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.262 1.262 12 N -0.691 5.691 13 C 0.482 3.518 14 O -0.535 6.535 15 C 0.088 3.912 16 H 0.100 0.900 17 F -0.190 7.190 18 C -0.175 4.175 19 C 0.037 3.963 20 N -0.662 5.662 21 C 0.025 3.975 22 H 0.036 0.964 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.268 0.732 26 H 0.397 0.603 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.336 0.664 31 H 0.077 0.923 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.061 -0.330 -13.882 14.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.132 3.868 3 H 0.068 0.932 4 C -0.576 4.576 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.527 5.527 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.339 5.339 13 C 0.265 3.735 14 O -0.413 6.413 15 C 0.047 3.953 16 H 0.117 0.883 17 F -0.171 7.171 18 C -0.196 4.196 19 C -0.092 4.092 20 N -0.288 5.288 21 C -0.105 4.105 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.231 0.769 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.098 0.902 30 H 0.150 0.850 31 H 0.095 0.905 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.472 0.424 -14.486 14.702 hybrid contribution -0.123 0.268 1.394 1.425 sum 2.350 0.692 -13.093 13.320 Atomic orbital electron populations 1.22451 0.99051 1.01051 0.99450 1.19174 0.90353 0.94688 0.82594 0.93232 1.21011 1.33553 1.14542 0.88474 0.90128 1.24827 0.95429 0.96729 0.95489 1.69865 1.44722 1.40036 0.98090 0.86870 0.80600 0.83506 0.77492 1.20202 1.22051 1.18706 1.46307 1.63983 1.13867 1.09762 1.20727 0.79770 0.88017 0.85035 1.90677 1.50071 1.15687 1.84852 1.21475 0.85690 1.00467 0.87663 0.88251 1.92837 1.58078 1.95554 1.70591 1.24817 0.98386 0.98101 0.98267 1.23565 0.97508 0.98453 0.89720 1.65083 1.09680 1.03511 1.50507 1.23717 1.01289 0.94068 0.91414 0.94457 0.93305 0.92669 0.92185 0.76891 0.87211 0.87674 0.90245 0.85018 0.90489 0.88044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 8.96 37.16 0.33 -3.27 16 2 C 0.24 5.49 2.15 -69.08 -0.15 5.34 16 3 H 0.05 1.27 6.64 -51.93 -0.34 0.93 16 4 C -0.54 -14.22 9.31 -34.44 -0.32 -14.54 16 5 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -25.96 13.96 55.43 0.77 -25.18 16 8 Si 0.89 21.46 24.37 -169.99 -4.14 17.32 16 9 H -0.28 -6.47 6.87 56.52 0.39 -6.09 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 12 N -0.69 -13.25 5.07 -54.93 -0.28 -13.53 16 13 C 0.48 8.77 7.13 -10.98 -0.08 8.69 16 14 O -0.54 -11.56 15.92 5.56 0.09 -11.47 16 15 C 0.09 1.19 3.78 -27.88 -0.11 1.08 16 16 H 0.10 1.05 7.99 -51.93 -0.42 0.63 16 17 F -0.19 -2.81 15.51 2.25 0.03 -2.78 16 18 C -0.18 -2.11 3.54 -89.69 -0.32 -2.42 16 19 C 0.04 0.47 7.85 -2.77 -0.02 0.45 16 20 N -0.66 -7.37 8.55 -117.03 -1.00 -8.37 16 21 C 0.03 0.25 8.39 -2.77 -0.02 0.23 16 22 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 24 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 26 H 0.40 6.57 8.43 -40.82 -0.34 6.23 16 27 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.11 1.48 7.13 -51.93 -0.37 1.11 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.34 3.14 8.89 -39.29 -0.35 2.79 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.10 1.02 7.90 -51.93 -0.41 0.61 16 LS Contribution 267.70 15.07 4.03 4.03 Total: -1.00 -30.80 267.70 -5.39 -36.19 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.12 Total: 6.13 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -0.78 Total: -2.35 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.51 Total: -47.08 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.03 Total: -2.78 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.14 Total: 17.32 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.80 -5.39 -36.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379526694.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.979 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds