Wall clock time and date at job start Mon Mar 30 2020 03:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42903 * 113.99823 * 2 1 4 4 C 1.53006 * 109.47256 * 180.02562 * 3 2 1 5 5 O 1.42906 * 109.46752 * 65.00003 * 4 3 2 6 6 C 1.42898 * 113.99824 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47174 * 180.02562 * 6 5 4 8 8 H 1.08998 * 110.27424 * 55.63711 * 7 6 5 9 9 C 1.54949 * 110.30825 * 177.83317 * 7 6 5 10 10 C 1.55309 * 100.93976 * 155.35881 * 9 7 6 11 11 C 1.54383 * 102.25017 * 325.86497 * 10 9 7 12 12 H 1.09007 * 109.82783 * 261.84351 * 11 10 9 13 13 C 1.50702 * 109.90487 * 140.91584 * 11 10 9 14 14 H 1.07998 * 120.00210 * 0.36693 * 13 11 10 15 15 C 1.37876 * 119.99885 * 180.36525 * 13 11 10 16 16 N 1.31511 * 120.00160 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99804 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47089 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47415 * 120.00073 * 17 15 13 20 20 H 1.48499 * 109.47047 * 240.00037 * 17 15 13 21 21 O 1.43235 * 107.59296 * 21.35933 * 11 10 9 22 22 H 1.08997 * 109.47704 * 59.99595 * 1 2 3 23 23 H 1.09003 * 109.46944 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47137 * 299.99376 * 1 2 3 25 25 H 1.09004 * 109.46868 * 60.00838 * 3 2 1 26 26 H 1.08992 * 109.47403 * 300.00259 * 3 2 1 27 27 H 1.08993 * 109.46955 * 185.00422 * 4 3 2 28 28 H 1.09000 * 109.47050 * 305.00250 * 4 3 2 29 29 H 1.09008 * 109.46688 * 300.00244 * 6 5 4 30 30 H 1.09002 * 109.47367 * 59.99723 * 6 5 4 31 31 H 1.08998 * 111.12167 * 273.27595 * 9 7 6 32 32 H 1.08994 * 111.12879 * 37.43837 * 9 7 6 33 33 H 1.09002 * 110.84336 * 207.67698 * 10 9 7 34 34 H 1.09000 * 110.84839 * 84.05445 * 10 9 7 35 35 H 0.97002 * 119.99985 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 8 3.9648 0.5798 -1.2221 6 6 5.3810 0.4193 -1.3247 7 6 5.7244 -0.2337 -2.6650 8 1 5.3090 0.3495 -3.4868 9 6 7.2603 -0.3674 -2.8202 10 6 7.3535 -1.5528 -3.8193 11 6 6.1450 -2.4220 -3.4101 12 1 6.4756 -3.2326 -2.7605 13 6 5.4818 -2.9896 -4.6386 14 1 5.8773 -2.7654 -5.6182 15 6 4.3701 -3.7952 -4.5118 16 7 3.8888 -4.0687 -3.3189 17 14 3.5485 -4.4994 -6.0345 18 1 4.2784 -4.0456 -7.2455 19 1 3.5721 -5.9827 -5.9686 20 1 2.1415 -4.0292 -6.1000 21 8 5.2246 -1.5798 -2.7063 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 1.6885 1.8463 0.8901 26 1 1.6885 1.8464 -0.8899 27 1 3.9784 2.1766 0.0890 28 1 3.8514 0.5683 0.8409 29 1 5.8626 1.3952 -1.2624 30 1 5.7350 -0.2132 -0.5106 31 1 7.6926 0.5388 -3.2444 32 1 7.7310 -0.6172 -1.8694 33 1 8.2872 -2.0995 -3.6866 34 1 7.2499 -1.2034 -4.8466 35 1 3.1068 -4.6358 -3.2298 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379584991.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:33 Heat of formation + Delta-G solvation = -139.578454 kcal Electronic energy + Delta-G solvation = -16581.471768 eV Core-core repulsion = 13772.986750 eV Total energy + Delta-G solvation = -2808.485018 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.46700 -37.79778 -36.54481 -32.53979 -30.87244 -30.60078 -28.98257 -26.20701 -25.70652 -23.08566 -22.32129 -20.29956 -19.97783 -16.74558 -16.46436 -16.35747 -15.78286 -15.30865 -14.99945 -14.57174 -14.46711 -14.03831 -13.22388 -12.70711 -12.43886 -12.23846 -11.85057 -11.69260 -11.55073 -11.12843 -10.83896 -10.74926 -10.55331 -10.37876 -10.22170 -10.05514 -9.62737 -9.50881 -9.22256 -9.03891 -8.40119 -7.68481 -5.83907 -3.98178 3.38504 3.45993 3.49294 3.94444 4.03923 4.54178 5.03237 5.13447 5.30411 5.35561 5.42719 5.48259 5.50073 5.56087 5.58663 5.69566 5.82177 5.85045 5.86820 5.91404 5.97872 6.28185 6.50385 6.55844 6.72147 6.80606 6.92066 7.33419 7.68991 7.75965 8.01502 8.41259 8.75612 9.19440 9.72931 11.22551 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.019489 B = 0.008223 C = 0.006050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.363149 B = 3404.199434 C = 4627.232659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.374 6.374 3 C 0.065 3.935 4 C 0.061 3.939 5 O -0.363 6.363 6 C 0.069 3.931 7 C 0.079 3.921 8 H 0.058 0.942 9 C -0.151 4.151 10 C -0.144 4.144 11 C 0.203 3.797 12 H 0.037 0.963 13 C -0.547 4.547 14 H 0.058 0.942 15 C 0.079 3.921 16 N -0.857 5.857 17 Si 0.887 3.113 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 O -0.344 6.344 22 H 0.039 0.961 23 H 0.086 0.914 24 H 0.034 0.966 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.576 11.349 6.842 13.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.012 4.012 4 C -0.016 4.016 5 O -0.281 6.281 6 C -0.008 4.008 7 C 0.020 3.980 8 H 0.076 0.924 9 C -0.189 4.189 10 C -0.181 4.181 11 C 0.147 3.853 12 H 0.054 0.946 13 C -0.584 4.584 14 H 0.076 0.924 15 C -0.127 4.127 16 N -0.493 5.493 17 Si 0.715 3.285 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 O -0.263 6.263 22 H 0.058 0.942 23 H 0.104 0.896 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.918 10.942 6.890 12.964 hybrid contribution -0.376 0.068 -0.654 0.758 sum -1.294 11.010 6.236 12.720 Atomic orbital electron populations 1.22720 0.81572 1.02877 0.99261 1.88090 1.19131 1.26808 1.95187 1.22520 0.92828 0.85718 1.00138 1.22441 0.93246 0.96876 0.89028 1.88114 1.22160 1.81600 1.36247 1.22742 0.81466 0.97730 0.98837 1.22673 0.91750 0.89408 0.94159 0.92435 1.23205 0.96381 0.99220 1.00050 1.23199 1.00258 0.96029 0.98646 1.20324 0.84694 0.88411 0.91839 0.94558 1.21395 1.14134 1.30582 0.92319 0.92379 1.25056 0.96669 0.95426 0.95531 1.70055 1.22419 1.35140 1.21724 0.86644 0.79626 0.78634 0.83636 1.19788 1.21010 1.20922 1.88880 1.46173 1.14224 1.77015 0.94192 0.89560 0.94700 0.92482 0.92658 0.92591 0.92794 0.93780 0.93213 0.91677 0.91534 0.92208 0.91545 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.60 10.67 -40.08 -0.43 -7.03 16 3 C 0.06 0.91 6.32 37.16 0.23 1.15 16 4 C 0.06 0.93 6.32 37.16 0.23 1.16 16 5 O -0.36 -7.40 10.30 -46.94 -0.48 -7.88 16 6 C 0.07 1.28 5.65 37.16 0.21 1.49 16 7 C 0.08 1.72 3.73 -25.70 -0.10 1.63 16 8 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 9 C -0.15 -2.75 6.57 -24.48 -0.16 -2.91 16 10 C -0.14 -3.06 6.53 -24.78 -0.16 -3.22 16 11 C 0.20 5.51 3.35 -27.16 -0.09 5.41 16 12 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 13 C -0.55 -16.10 8.75 -34.44 -0.30 -16.40 16 14 H 0.06 1.66 7.53 -52.49 -0.40 1.26 16 15 C 0.08 2.37 5.41 -17.82 -0.10 2.27 16 16 N -0.86 -27.03 12.91 55.43 0.72 -26.31 16 17 Si 0.89 22.39 29.54 -169.99 -5.02 17.37 16 18 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 21 O -0.34 -9.62 10.18 -36.86 -0.38 -10.00 16 22 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.41 7.66 -51.93 -0.40 1.01 16 35 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 295.97 15.07 4.46 4.46 Total: -1.00 -35.23 295.97 -6.09 -41.32 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -5.84 Total: -4.04 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 0.88 Total: -7.88 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.72 Total: -26.31 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -1.29 Total: -24.91 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -35.23 -6.09 -41.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379584991.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.262 kcal (2) G-P(sol) polarization free energy of solvation -35.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds