Wall clock time and date at job start Mon Mar 30 2020 03:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42903 * 113.99823 * 2 1 4 4 C 1.53006 * 109.47256 * 180.02562 * 3 2 1 5 5 O 1.42906 * 109.46752 * 65.00003 * 4 3 2 6 6 C 1.42898 * 113.99824 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47174 * 180.02562 * 6 5 4 8 8 H 1.08998 * 110.27424 * 55.63711 * 7 6 5 9 9 C 1.54949 * 110.30825 * 177.83317 * 7 6 5 10 10 C 1.55309 * 100.93976 * 155.35881 * 9 7 6 11 11 C 1.54383 * 102.25017 * 325.86497 * 10 9 7 12 12 H 1.09007 * 109.82783 * 261.84351 * 11 10 9 13 13 C 1.50702 * 109.90487 * 140.91584 * 11 10 9 14 14 H 1.07998 * 120.00210 * 0.36693 * 13 11 10 15 15 C 1.37876 * 119.99885 * 180.36525 * 13 11 10 16 16 N 1.31511 * 120.00160 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99804 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47089 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47415 * 120.00073 * 17 15 13 20 20 H 1.48499 * 109.47047 * 240.00037 * 17 15 13 21 21 O 1.43235 * 107.59296 * 21.35933 * 11 10 9 22 22 H 1.08997 * 109.47704 * 59.99595 * 1 2 3 23 23 H 1.09003 * 109.46944 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47137 * 299.99376 * 1 2 3 25 25 H 1.09004 * 109.46868 * 60.00838 * 3 2 1 26 26 H 1.08992 * 109.47403 * 300.00259 * 3 2 1 27 27 H 1.08993 * 109.46955 * 185.00422 * 4 3 2 28 28 H 1.09000 * 109.47050 * 305.00250 * 4 3 2 29 29 H 1.09008 * 109.46688 * 300.00244 * 6 5 4 30 30 H 1.09002 * 109.47367 * 59.99723 * 6 5 4 31 31 H 1.08998 * 111.12167 * 273.27595 * 9 7 6 32 32 H 1.08994 * 111.12879 * 37.43837 * 9 7 6 33 33 H 1.09002 * 110.84336 * 207.67698 * 10 9 7 34 34 H 1.09000 * 110.84839 * 84.05445 * 10 9 7 35 35 H 0.97002 * 119.99985 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 8 3.9648 0.5798 -1.2221 6 6 5.3810 0.4193 -1.3247 7 6 5.7244 -0.2337 -2.6650 8 1 5.3090 0.3495 -3.4868 9 6 7.2603 -0.3674 -2.8202 10 6 7.3535 -1.5528 -3.8193 11 6 6.1450 -2.4220 -3.4101 12 1 6.4756 -3.2326 -2.7605 13 6 5.4818 -2.9896 -4.6386 14 1 5.8773 -2.7654 -5.6182 15 6 4.3701 -3.7952 -4.5118 16 7 3.8888 -4.0687 -3.3189 17 14 3.5485 -4.4994 -6.0345 18 1 4.2784 -4.0456 -7.2455 19 1 3.5721 -5.9827 -5.9686 20 1 2.1415 -4.0292 -6.1000 21 8 5.2246 -1.5798 -2.7063 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 1.6885 1.8463 0.8901 26 1 1.6885 1.8464 -0.8899 27 1 3.9784 2.1766 0.0890 28 1 3.8514 0.5683 0.8409 29 1 5.8626 1.3952 -1.2624 30 1 5.7350 -0.2132 -0.5106 31 1 7.6926 0.5388 -3.2444 32 1 7.7310 -0.6172 -1.8694 33 1 8.2872 -2.0995 -3.6866 34 1 7.2499 -1.2034 -4.8466 35 1 3.1068 -4.6358 -3.2298 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379584991.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:33 Heat of formation + Delta-G solvation = -165.795832 kcal Electronic energy + Delta-G solvation = -16582.608638 eV Core-core repulsion = 13772.986750 eV Total energy + Delta-G solvation = -2809.621889 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.11406 -39.15681 -37.93752 -34.71449 -32.65037 -32.08341 -30.53519 -27.81998 -27.09409 -24.89339 -23.48037 -22.00160 -21.80799 -18.58789 -18.00826 -17.65944 -17.35384 -16.84068 -16.44310 -16.19741 -15.94045 -15.63756 -14.95467 -14.44987 -13.93392 -13.70649 -13.46500 -13.23353 -12.93330 -12.81511 -12.41811 -12.32076 -12.19419 -12.07219 -11.96835 -11.69462 -11.43748 -11.07045 -10.68285 -10.61972 -10.48437 -9.75566 -8.09681 -6.32141 1.37379 1.39646 1.51730 2.41565 2.76105 2.91689 3.09489 3.58340 3.92286 3.99866 4.16102 4.23427 4.27703 4.36270 4.42639 4.47328 4.49272 4.55939 4.58841 4.73789 4.78803 4.82354 4.83182 4.96061 4.98035 5.16682 5.30461 5.63198 5.77593 6.21150 6.25136 6.43078 6.64584 7.12418 7.45501 8.97310 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.019489 B = 0.008223 C = 0.006050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.363149 B = 3404.199434 C = 4627.232659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.424 6.424 3 C 0.059 3.941 4 C 0.053 3.947 5 O -0.408 6.408 6 C 0.074 3.926 7 C 0.061 3.939 8 H 0.045 0.955 9 C -0.131 4.131 10 C -0.137 4.137 11 C 0.191 3.809 12 H 0.000 1.000 13 C -0.566 4.566 14 H 0.062 0.938 15 C 0.018 3.982 16 N -0.902 5.902 17 Si 0.960 3.040 18 H -0.259 1.259 19 H -0.273 1.273 20 H -0.284 1.284 21 O -0.388 6.388 22 H 0.044 0.956 23 H 0.081 0.919 24 H 0.066 0.934 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.043 0.957 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.070 13.252 6.684 14.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.343 6.343 3 C -0.017 4.017 4 C -0.023 4.023 5 O -0.328 6.328 6 C -0.003 4.003 7 C 0.003 3.997 8 H 0.063 0.937 9 C -0.168 4.168 10 C -0.175 4.175 11 C 0.136 3.864 12 H 0.017 0.983 13 C -0.603 4.603 14 H 0.080 0.920 15 C -0.184 4.184 16 N -0.540 5.540 17 Si 0.785 3.215 18 H -0.183 1.183 19 H -0.199 1.199 20 H -0.210 1.210 21 O -0.308 6.308 22 H 0.063 0.937 23 H 0.100 0.900 24 H 0.084 0.916 25 H 0.116 0.884 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.125 0.875 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.258 12.863 6.730 14.520 hybrid contribution -0.587 -0.460 -0.550 0.927 sum -0.845 12.404 6.180 13.884 Atomic orbital electron populations 1.22880 0.79759 1.03252 1.01000 1.88018 1.21474 1.29273 1.95570 1.22775 0.92180 0.84737 1.02002 1.22793 0.94174 0.98470 0.86882 1.88054 1.23138 1.82699 1.38908 1.22726 0.81415 0.99618 0.96494 1.23055 0.94211 0.86573 0.95870 0.93684 1.23147 0.93871 0.99544 1.00236 1.23079 0.98416 0.96533 0.99437 1.20264 0.86855 0.88928 0.90393 0.98270 1.21877 1.14385 1.30674 0.93394 0.91995 1.26014 0.97538 0.95952 0.98855 1.70222 1.23070 1.36339 1.24319 0.85502 0.78122 0.78177 0.79745 1.18323 1.19883 1.20990 1.88786 1.47645 1.17277 1.77120 0.93742 0.90034 0.91553 0.88414 0.92724 0.88462 0.93258 0.88973 0.93827 0.87455 0.89783 0.90109 0.91545 0.93257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.42 -15.03 10.67 -144.35 -1.54 -16.57 16 3 C 0.06 1.59 6.32 71.98 0.45 2.04 16 4 C 0.05 1.52 6.32 71.98 0.45 1.97 16 5 O -0.41 -16.52 10.30 -137.79 -1.42 -17.94 16 6 C 0.07 2.63 5.65 71.98 0.41 3.03 16 7 C 0.06 2.62 3.73 31.26 0.12 2.74 16 8 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 9 C -0.13 -4.41 6.57 32.05 0.21 -4.20 16 10 C -0.14 -5.68 6.53 31.86 0.21 -5.47 16 11 C 0.19 10.68 3.35 30.32 0.10 10.78 16 12 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 13 C -0.57 -34.07 8.75 25.60 0.22 -33.85 16 14 H 0.06 3.56 7.53 -2.91 -0.02 3.54 16 15 C 0.02 1.10 5.41 84.65 0.46 1.56 16 16 N -0.90 -59.08 12.91 21.45 0.28 -58.80 16 17 Si 0.96 46.90 29.54 68.60 2.03 48.92 16 18 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 21 O -0.39 -22.42 10.18 -147.42 -1.50 -23.92 16 22 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.08 2.56 8.06 -2.39 -0.02 2.54 16 33 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 34 H 0.07 2.72 7.66 -2.39 -0.02 2.70 16 35 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -80.59 295.97 2.76 -77.83 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 1.04 Total: 9.93 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 3.88 Total: -19.45 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: 0.28 Total: -58.80 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -4.46 Total: -58.43 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -80.59 2.76 -77.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379584991.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.970 kcal (2) G-P(sol) polarization free energy of solvation -80.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds