Wall clock time and date at job start Mon Mar 30 2020 03:17:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42903 * 114.00144 * 2 1
4 4 C 1.52997 * 109.47001 * 179.97438 * 3 2 1
5 5 O 1.42903 * 109.47181 * 64.99965 * 4 3 2
6 6 C 1.42904 * 113.99958 * 179.97438 * 5 4 3
7 7 C 1.52995 * 109.47026 * 179.97438 * 6 5 4
8 8 H 1.09000 * 110.27855 * 304.36535 * 7 6 5
9 9 C 1.55503 * 110.28399 * 182.20315 * 7 6 5
10 10 C 1.55305 * 100.69731 * 204.65557 * 9 7 6
11 11 C 1.54382 * 102.43395 * 34.13038 * 10 9 7
12 12 H 1.09007 * 109.82575 * 98.14672 * 11 10 9
13 13 C 1.50699 * 109.83066 * 219.02306 * 11 10 9
14 14 H 1.08006 * 119.99747 * 0.02562 * 13 11 10
15 15 C 1.37876 * 120.00153 * 180.02562 * 13 11 10
16 16 N 1.31508 * 120.00014 * 0.02562 * 15 13 11
17 17 Si 1.86797 * 119.99940 * 180.02562 * 15 13 11
18 18 H 1.48498 * 109.47371 * 59.99693 * 17 15 13
19 19 H 1.48502 * 109.47081 * 179.97438 * 17 15 13
20 20 H 1.48498 * 109.47146 * 299.99363 * 17 15 13
21 21 O 1.43232 * 107.59109 * 338.54226 * 11 10 9
22 22 H 1.08998 * 109.47054 * 300.00462 * 1 2 3
23 23 H 1.08997 * 109.46613 * 60.00216 * 1 2 3
24 24 H 1.09001 * 109.47271 * 180.02562 * 1 2 3
25 25 H 1.08995 * 109.47264 * 60.00080 * 3 2 1
26 26 H 1.09001 * 109.46770 * 299.99726 * 3 2 1
27 27 H 1.09000 * 109.47306 * 304.99879 * 4 3 2
28 28 H 1.08999 * 109.47463 * 184.99641 * 4 3 2
29 29 H 1.09008 * 109.47001 * 60.00433 * 6 5 4
30 30 H 1.08996 * 109.47300 * 300.00378 * 6 5 4
31 31 H 1.08999 * 111.32643 * 86.78498 * 9 7 6
32 32 H 1.08995 * 111.14910 * 322.45919 * 9 7 6
33 33 H 1.09002 * 110.85041 * 275.83884 * 10 9 7
34 34 H 1.09001 * 110.84389 * 152.42021 * 10 9 7
35 35 H 0.97005 * 120.00196 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5355 1.1846 0.0006
5 8 3.9659 0.5791 -1.2201
6 6 5.3823 0.4195 -1.3220
7 6 5.7267 -0.2353 -2.6612
8 1 5.1908 -1.1782 -2.7695
9 6 7.2604 -0.4687 -2.7685
10 6 7.4411 -0.4925 -4.3108
11 6 6.3821 0.5256 -4.7854
12 1 6.8535 1.4914 -4.9681
13 6 5.7263 0.0300 -6.0484
14 1 6.0263 -0.9145 -6.4778
15 6 4.7433 0.7823 -6.6558
16 7 4.3784 1.9326 -6.1332
17 14 3.9300 0.1675 -8.2210
18 1 3.2717 -1.1372 -7.9573
19 1 2.9134 1.1524 -8.6703
20 1 4.9577 -0.0015 -9.2794
21 8 5.4041 0.6492 -3.7462
22 1 -0.3633 0.5139 0.8899
23 1 -0.3632 0.5138 -0.8900
24 1 -0.3634 -1.0277 0.0005
25 1 1.6887 1.8464 0.8899
26 1 1.6887 1.8463 -0.8900
27 1 3.8508 0.5685 0.8427
28 1 3.9786 2.1764 0.0901
29 1 5.7363 -0.2123 -0.5073
30 1 5.8633 1.3957 -1.2600
31 1 7.5483 -1.4216 -2.3245
32 1 7.8158 0.3551 -2.3205
33 1 7.2319 -1.4847 -4.7107
34 1 8.4437 -0.1676 -4.5889
35 1 3.6866 2.4617 -6.5603
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000379584992.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:17:34
Heat of formation + Delta-G solvation = -140.966996 kcal
Electronic energy + Delta-G solvation = -16493.573466 eV
Core-core repulsion = 13685.028236 eV
Total energy + Delta-G solvation = -2808.545229 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 230.135 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-38.47443 -37.84439 -36.57449 -32.56470 -30.88589 -30.62269 -28.99611 -26.28516
-25.73746 -23.09390 -22.33979 -20.31735 -19.98943 -16.69311 -16.63316 -16.37878
-15.70167 -15.36047 -15.08541 -14.64574 -14.52333 -14.01406 -13.25996 -12.80048
-12.40889 -12.16701 -11.85652 -11.78627 -11.61645 -11.19004 -10.81228 -10.77508
-10.58574 -10.41679 -10.24806 -10.07798 -9.65504 -9.59159 -9.23263 -9.05423
-8.42419 -7.71980 -5.87773 -4.01532 3.38940 3.43219 3.45748 3.86293
4.03101 4.51700 5.01663 5.11291 5.28033 5.35042 5.40423 5.42370
5.49253 5.53574 5.62180 5.69624 5.71969 5.79756 5.87724 5.91912
5.96109 6.27577 6.49704 6.54554 6.70846 6.80072 6.91866 7.22426
7.68151 7.73375 7.98221 8.38441 8.72608 9.15756 9.69591 11.18909
Molecular weight = 230.14amu
Principal moments of inertia in cm(-1)
A = 0.020929 B = 0.007299 C = 0.005811
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1337.540097 B = 3835.113623 C = 4817.519006
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.383 6.383
3 C 0.064 3.936
4 C 0.063 3.937
5 O -0.363 6.363
6 C 0.069 3.931
7 C 0.079 3.921
8 H 0.060 0.940
9 C -0.151 4.151
10 C -0.144 4.144
11 C 0.204 3.796
12 H 0.037 0.963
13 C -0.546 4.546
14 H 0.057 0.943
15 C 0.079 3.921
16 N -0.862 5.862
17 Si 0.889 3.111
18 H -0.276 1.276
19 H -0.287 1.287
20 H -0.277 1.277
21 O -0.347 6.347
22 H 0.036 0.964
23 H 0.042 0.958
24 H 0.083 0.917
25 H 0.058 0.942
26 H 0.062 0.938
27 H 0.050 0.950
28 H 0.060 0.940
29 H 0.046 0.954
30 H 0.048 0.952
31 H 0.065 0.935
32 H 0.066 0.934
33 H 0.066 0.934
34 H 0.059 0.941
35 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.599 -1.469 12.840 13.022
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.302 6.302
3 C -0.013 4.013
4 C -0.015 4.015
5 O -0.281 6.281
6 C -0.007 4.007
7 C 0.020 3.980
8 H 0.077 0.923
9 C -0.188 4.188
10 C -0.182 4.182
11 C 0.148 3.852
12 H 0.055 0.945
13 C -0.583 4.583
14 H 0.076 0.924
15 C -0.126 4.126
16 N -0.498 5.498
17 Si 0.716 3.284
18 H -0.202 1.202
19 H -0.213 1.213
20 H -0.202 1.202
21 O -0.266 6.266
22 H 0.054 0.946
23 H 0.061 0.939
24 H 0.102 0.898
25 H 0.076 0.924
26 H 0.080 0.920
27 H 0.068 0.932
28 H 0.078 0.922
29 H 0.064 0.936
30 H 0.067 0.933
31 H 0.084 0.916
32 H 0.084 0.916
33 H 0.085 0.915
34 H 0.078 0.922
35 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -1.906 -1.383 12.659 12.876
hybrid contribution -0.377 -0.107 -0.587 0.705
sum -2.282 -1.490 12.072 12.376
Atomic orbital electron populations
1.22718 0.81476 1.02604 0.99706 1.87964 1.19281 1.27573 1.95333
1.22566 0.92783 0.85290 1.00660 1.22433 0.93168 0.97431 0.88428
1.88120 1.22055 1.81435 1.36529 1.22736 0.81585 0.99263 0.97159
1.22786 0.92902 0.94435 0.87858 0.92254 1.23290 0.96405 1.00913
0.98233 1.23195 1.00212 1.01779 0.92981 1.20308 0.84998 0.93431
0.86445 0.94493 1.21347 1.22608 1.06380 1.08009 0.92436 1.25045
0.96196 0.94576 0.96815 1.70030 1.29121 1.12003 1.38647 0.86743
0.79264 0.78782 0.83610 1.20155 1.21255 1.20227 1.88841 1.50861
1.60255 1.26648 0.94556 0.93900 0.89798 0.92358 0.92007 0.93221
0.92159 0.93630 0.93342 0.91584 0.91554 0.91545 0.92230 0.93049
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.37 11.01 101.05 1.11 1.48 16
2 O -0.38 -6.06 10.67 -40.08 -0.43 -6.49 16
3 C 0.06 0.90 6.32 37.16 0.23 1.13 16
4 C 0.06 0.94 6.32 37.16 0.23 1.18 16
5 O -0.36 -7.39 10.30 -46.94 -0.48 -7.88 16
6 C 0.07 1.28 5.65 37.15 0.21 1.49 16
7 C 0.08 1.72 3.74 -25.40 -0.09 1.63 16
8 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16
9 C -0.15 -2.74 6.61 -24.18 -0.16 -2.90 16
10 C -0.14 -3.05 6.51 -24.78 -0.16 -3.21 16
11 C 0.20 5.47 3.35 -27.16 -0.09 5.38 16
12 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16
13 C -0.55 -15.96 8.75 -34.44 -0.30 -16.26 16
14 H 0.06 1.62 7.52 -52.48 -0.39 1.23 16
15 C 0.08 2.35 5.41 -17.82 -0.10 2.26 16
16 N -0.86 -26.75 12.93 55.43 0.72 -26.04 16
17 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16
18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16
19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
21 O -0.35 -9.57 10.21 -36.86 -0.38 -9.95 16
22 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16
23 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16
24 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16
25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16
28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
29 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16
30 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16
31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16
32 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16
33 H 0.07 1.40 7.65 -51.93 -0.40 1.01 16
34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16
35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16
LS Contribution 296.04 15.07 4.46 4.46
Total: -1.00 -34.34 296.04 -6.08 -40.43
By element:
Atomic # 1 Polarization: 1.92 SS G_CDS: -5.84 Total: -3.93 kcal
Atomic # 6 Polarization: -8.71 SS G_CDS: 0.89 Total: -7.82 kcal
Atomic # 7 Polarization: -26.75 SS G_CDS: 0.72 Total: -26.04 kcal
Atomic # 8 Polarization: -23.02 SS G_CDS: -1.29 Total: -24.31 kcal
Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal
Total LS contribution 4.46 Total: 4.46 kcal
Total: -34.34 -6.08 -40.43 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379584992.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -100.541 kcal
(2) G-P(sol) polarization free energy of solvation -34.342 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.883 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.084 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal
(6) G-S(sol) free energy of system = (1) + (5) -140.967 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds