Wall clock time and date at job start Mon Mar 30 2020 03:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 114.00144 * 2 1 4 4 C 1.52997 * 109.47001 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.47181 * 64.99965 * 4 3 2 6 6 C 1.42904 * 113.99958 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47026 * 179.97438 * 6 5 4 8 8 H 1.09000 * 110.27855 * 304.36535 * 7 6 5 9 9 C 1.55503 * 110.28399 * 182.20315 * 7 6 5 10 10 C 1.55305 * 100.69731 * 204.65557 * 9 7 6 11 11 C 1.54382 * 102.43395 * 34.13038 * 10 9 7 12 12 H 1.09007 * 109.82575 * 98.14672 * 11 10 9 13 13 C 1.50699 * 109.83066 * 219.02306 * 11 10 9 14 14 H 1.08006 * 119.99747 * 0.02562 * 13 11 10 15 15 C 1.37876 * 120.00153 * 180.02562 * 13 11 10 16 16 N 1.31508 * 120.00014 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 119.99940 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47371 * 59.99693 * 17 15 13 19 19 H 1.48502 * 109.47081 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47146 * 299.99363 * 17 15 13 21 21 O 1.43232 * 107.59109 * 338.54226 * 11 10 9 22 22 H 1.08998 * 109.47054 * 300.00462 * 1 2 3 23 23 H 1.08997 * 109.46613 * 60.00216 * 1 2 3 24 24 H 1.09001 * 109.47271 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47264 * 60.00080 * 3 2 1 26 26 H 1.09001 * 109.46770 * 299.99726 * 3 2 1 27 27 H 1.09000 * 109.47306 * 304.99879 * 4 3 2 28 28 H 1.08999 * 109.47463 * 184.99641 * 4 3 2 29 29 H 1.09008 * 109.47001 * 60.00433 * 6 5 4 30 30 H 1.08996 * 109.47300 * 300.00378 * 6 5 4 31 31 H 1.08999 * 111.32643 * 86.78498 * 9 7 6 32 32 H 1.08995 * 111.14910 * 322.45919 * 9 7 6 33 33 H 1.09002 * 110.85041 * 275.83884 * 10 9 7 34 34 H 1.09001 * 110.84389 * 152.42021 * 10 9 7 35 35 H 0.97005 * 120.00196 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9659 0.5791 -1.2201 6 6 5.3823 0.4195 -1.3220 7 6 5.7267 -0.2353 -2.6612 8 1 5.1908 -1.1782 -2.7695 9 6 7.2604 -0.4687 -2.7685 10 6 7.4411 -0.4925 -4.3108 11 6 6.3821 0.5256 -4.7854 12 1 6.8535 1.4914 -4.9681 13 6 5.7263 0.0300 -6.0484 14 1 6.0263 -0.9145 -6.4778 15 6 4.7433 0.7823 -6.6558 16 7 4.3784 1.9326 -6.1332 17 14 3.9300 0.1675 -8.2210 18 1 3.2717 -1.1372 -7.9573 19 1 2.9134 1.1524 -8.6703 20 1 4.9577 -0.0015 -9.2794 21 8 5.4041 0.6492 -3.7462 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6887 1.8464 0.8899 26 1 1.6887 1.8463 -0.8900 27 1 3.8508 0.5685 0.8427 28 1 3.9786 2.1764 0.0901 29 1 5.7363 -0.2123 -0.5073 30 1 5.8633 1.3957 -1.2600 31 1 7.5483 -1.4216 -2.3245 32 1 7.8158 0.3551 -2.3205 33 1 7.2319 -1.4847 -4.7107 34 1 8.4437 -0.1676 -4.5889 35 1 3.6866 2.4617 -6.5603 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379584992.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:34 Heat of formation + Delta-G solvation = -140.966996 kcal Electronic energy + Delta-G solvation = -16493.573466 eV Core-core repulsion = 13685.028236 eV Total energy + Delta-G solvation = -2808.545229 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.47443 -37.84439 -36.57449 -32.56470 -30.88589 -30.62269 -28.99611 -26.28516 -25.73746 -23.09390 -22.33979 -20.31735 -19.98943 -16.69311 -16.63316 -16.37878 -15.70167 -15.36047 -15.08541 -14.64574 -14.52333 -14.01406 -13.25996 -12.80048 -12.40889 -12.16701 -11.85652 -11.78627 -11.61645 -11.19004 -10.81228 -10.77508 -10.58574 -10.41679 -10.24806 -10.07798 -9.65504 -9.59159 -9.23263 -9.05423 -8.42419 -7.71980 -5.87773 -4.01532 3.38940 3.43219 3.45748 3.86293 4.03101 4.51700 5.01663 5.11291 5.28033 5.35042 5.40423 5.42370 5.49253 5.53574 5.62180 5.69624 5.71969 5.79756 5.87724 5.91912 5.96109 6.27577 6.49704 6.54554 6.70846 6.80072 6.91866 7.22426 7.68151 7.73375 7.98221 8.38441 8.72608 9.15756 9.69591 11.18909 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.020929 B = 0.007299 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.540097 B = 3835.113623 C = 4817.519006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.064 3.936 4 C 0.063 3.937 5 O -0.363 6.363 6 C 0.069 3.931 7 C 0.079 3.921 8 H 0.060 0.940 9 C -0.151 4.151 10 C -0.144 4.144 11 C 0.204 3.796 12 H 0.037 0.963 13 C -0.546 4.546 14 H 0.057 0.943 15 C 0.079 3.921 16 N -0.862 5.862 17 Si 0.889 3.111 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.277 1.277 21 O -0.347 6.347 22 H 0.036 0.964 23 H 0.042 0.958 24 H 0.083 0.917 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.599 -1.469 12.840 13.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.013 4.013 4 C -0.015 4.015 5 O -0.281 6.281 6 C -0.007 4.007 7 C 0.020 3.980 8 H 0.077 0.923 9 C -0.188 4.188 10 C -0.182 4.182 11 C 0.148 3.852 12 H 0.055 0.945 13 C -0.583 4.583 14 H 0.076 0.924 15 C -0.126 4.126 16 N -0.498 5.498 17 Si 0.716 3.284 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 O -0.266 6.266 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.102 0.898 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.906 -1.383 12.659 12.876 hybrid contribution -0.377 -0.107 -0.587 0.705 sum -2.282 -1.490 12.072 12.376 Atomic orbital electron populations 1.22718 0.81476 1.02604 0.99706 1.87964 1.19281 1.27573 1.95333 1.22566 0.92783 0.85290 1.00660 1.22433 0.93168 0.97431 0.88428 1.88120 1.22055 1.81435 1.36529 1.22736 0.81585 0.99263 0.97159 1.22786 0.92902 0.94435 0.87858 0.92254 1.23290 0.96405 1.00913 0.98233 1.23195 1.00212 1.01779 0.92981 1.20308 0.84998 0.93431 0.86445 0.94493 1.21347 1.22608 1.06380 1.08009 0.92436 1.25045 0.96196 0.94576 0.96815 1.70030 1.29121 1.12003 1.38647 0.86743 0.79264 0.78782 0.83610 1.20155 1.21255 1.20227 1.88841 1.50861 1.60255 1.26648 0.94556 0.93900 0.89798 0.92358 0.92007 0.93221 0.92159 0.93630 0.93342 0.91584 0.91554 0.91545 0.92230 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -6.06 10.67 -40.08 -0.43 -6.49 16 3 C 0.06 0.90 6.32 37.16 0.23 1.13 16 4 C 0.06 0.94 6.32 37.16 0.23 1.18 16 5 O -0.36 -7.39 10.30 -46.94 -0.48 -7.88 16 6 C 0.07 1.28 5.65 37.15 0.21 1.49 16 7 C 0.08 1.72 3.74 -25.40 -0.09 1.63 16 8 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 9 C -0.15 -2.74 6.61 -24.18 -0.16 -2.90 16 10 C -0.14 -3.05 6.51 -24.78 -0.16 -3.21 16 11 C 0.20 5.47 3.35 -27.16 -0.09 5.38 16 12 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 13 C -0.55 -15.96 8.75 -34.44 -0.30 -16.26 16 14 H 0.06 1.62 7.52 -52.48 -0.39 1.23 16 15 C 0.08 2.35 5.41 -17.82 -0.10 2.26 16 16 N -0.86 -26.75 12.93 55.43 0.72 -26.04 16 17 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 O -0.35 -9.57 10.21 -36.86 -0.38 -9.95 16 22 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 23 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 33 H 0.07 1.40 7.65 -51.93 -0.40 1.01 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 296.04 15.07 4.46 4.46 Total: -1.00 -34.34 296.04 -6.08 -40.43 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -5.84 Total: -3.93 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 0.89 Total: -7.82 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.72 Total: -26.04 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -1.29 Total: -24.31 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.34 -6.08 -40.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379584992.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.541 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds