Wall clock time and date at job start Mon Mar 30 2020 03:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 114.00144 * 2 1 4 4 C 1.52997 * 109.47001 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.47181 * 64.99965 * 4 3 2 6 6 C 1.42904 * 113.99958 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47026 * 179.97438 * 6 5 4 8 8 H 1.09000 * 110.27855 * 304.36535 * 7 6 5 9 9 C 1.55503 * 110.28399 * 182.20315 * 7 6 5 10 10 C 1.55305 * 100.69731 * 204.65557 * 9 7 6 11 11 C 1.54382 * 102.43395 * 34.13038 * 10 9 7 12 12 H 1.09007 * 109.82575 * 98.14672 * 11 10 9 13 13 C 1.50699 * 109.83066 * 219.02306 * 11 10 9 14 14 H 1.08006 * 119.99747 * 0.02562 * 13 11 10 15 15 C 1.37876 * 120.00153 * 180.02562 * 13 11 10 16 16 N 1.31508 * 120.00014 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 119.99940 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47371 * 59.99693 * 17 15 13 19 19 H 1.48502 * 109.47081 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47146 * 299.99363 * 17 15 13 21 21 O 1.43232 * 107.59109 * 338.54226 * 11 10 9 22 22 H 1.08998 * 109.47054 * 300.00462 * 1 2 3 23 23 H 1.08997 * 109.46613 * 60.00216 * 1 2 3 24 24 H 1.09001 * 109.47271 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47264 * 60.00080 * 3 2 1 26 26 H 1.09001 * 109.46770 * 299.99726 * 3 2 1 27 27 H 1.09000 * 109.47306 * 304.99879 * 4 3 2 28 28 H 1.08999 * 109.47463 * 184.99641 * 4 3 2 29 29 H 1.09008 * 109.47001 * 60.00433 * 6 5 4 30 30 H 1.08996 * 109.47300 * 300.00378 * 6 5 4 31 31 H 1.08999 * 111.32643 * 86.78498 * 9 7 6 32 32 H 1.08995 * 111.14910 * 322.45919 * 9 7 6 33 33 H 1.09002 * 110.85041 * 275.83884 * 10 9 7 34 34 H 1.09001 * 110.84389 * 152.42021 * 10 9 7 35 35 H 0.97005 * 120.00196 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9659 0.5791 -1.2201 6 6 5.3823 0.4195 -1.3220 7 6 5.7267 -0.2353 -2.6612 8 1 5.1908 -1.1782 -2.7695 9 6 7.2604 -0.4687 -2.7685 10 6 7.4411 -0.4925 -4.3108 11 6 6.3821 0.5256 -4.7854 12 1 6.8535 1.4914 -4.9681 13 6 5.7263 0.0300 -6.0484 14 1 6.0263 -0.9145 -6.4778 15 6 4.7433 0.7823 -6.6558 16 7 4.3784 1.9326 -6.1332 17 14 3.9300 0.1675 -8.2210 18 1 3.2717 -1.1372 -7.9573 19 1 2.9134 1.1524 -8.6703 20 1 4.9577 -0.0015 -9.2794 21 8 5.4041 0.6492 -3.7462 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6887 1.8464 0.8899 26 1 1.6887 1.8463 -0.8900 27 1 3.8508 0.5685 0.8427 28 1 3.9786 2.1764 0.0901 29 1 5.7363 -0.2123 -0.5073 30 1 5.8633 1.3957 -1.2600 31 1 7.5483 -1.4216 -2.3245 32 1 7.8158 0.3551 -2.3205 33 1 7.2319 -1.4847 -4.7107 34 1 8.4437 -0.1676 -4.5889 35 1 3.6866 2.4617 -6.5603 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379584992.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:34 Heat of formation + Delta-G solvation = -166.080404 kcal Electronic energy + Delta-G solvation = -16494.662465 eV Core-core repulsion = 13685.028236 eV Total energy + Delta-G solvation = -2809.634229 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.10313 -39.16358 -37.93931 -34.71909 -32.65013 -32.08908 -30.53846 -27.82513 -27.08572 -24.89169 -23.49875 -22.00652 -21.81636 -18.59442 -17.93788 -17.83641 -17.21423 -16.85321 -16.47476 -16.23502 -15.98602 -15.59474 -14.90912 -14.54298 -13.92006 -13.71014 -13.40706 -13.23832 -12.99732 -12.76557 -12.42123 -12.30460 -12.28957 -12.10011 -11.96473 -11.71774 -11.44382 -11.08182 -10.66589 -10.65176 -10.48953 -9.77366 -8.11030 -6.32830 1.37658 1.41963 1.48928 2.41245 2.75076 2.86782 3.08193 3.57357 3.91923 3.98357 4.15641 4.21652 4.26779 4.38943 4.40868 4.47440 4.49350 4.56967 4.60246 4.72577 4.78661 4.81684 4.83562 4.95197 4.97737 5.16503 5.29641 5.62387 5.77272 6.19769 6.20755 6.40468 6.63328 7.10291 7.44366 8.95858 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.020929 B = 0.007299 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.540097 B = 3835.113623 C = 4817.519006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.061 3.939 4 C 0.055 3.945 5 O -0.408 6.408 6 C 0.074 3.926 7 C 0.062 3.938 8 H 0.041 0.959 9 C -0.130 4.130 10 C -0.138 4.138 11 C 0.192 3.808 12 H 0.004 0.996 13 C -0.567 4.567 14 H 0.061 0.939 15 C 0.020 3.980 16 N -0.903 5.903 17 Si 0.959 3.041 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.261 1.261 21 O -0.388 6.388 22 H 0.063 0.937 23 H 0.036 0.964 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.052 0.948 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.155 -2.391 14.065 14.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.015 4.015 4 C -0.022 4.022 5 O -0.328 6.328 6 C -0.002 4.002 7 C 0.004 3.996 8 H 0.059 0.941 9 C -0.168 4.168 10 C -0.175 4.175 11 C 0.136 3.864 12 H 0.021 0.979 13 C -0.605 4.605 14 H 0.079 0.921 15 C -0.182 4.182 16 N -0.540 5.540 17 Si 0.783 3.217 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.185 1.185 21 O -0.308 6.308 22 H 0.082 0.918 23 H 0.055 0.945 24 H 0.112 0.888 25 H 0.116 0.884 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.451 -2.316 13.894 14.160 hybrid contribution -0.542 0.178 -0.892 1.059 sum -1.993 -2.138 13.001 13.326 Atomic orbital electron populations 1.22916 0.79677 1.03727 1.00741 1.87907 1.21440 1.28638 1.95567 1.22698 0.92336 0.84972 1.01535 1.22746 0.93869 0.98426 0.87115 1.88061 1.23000 1.82310 1.39464 1.22711 0.81279 0.99944 0.96277 1.23128 0.95420 0.93184 0.87891 0.94095 1.23236 0.93694 1.03791 0.96054 1.23078 0.99361 0.99807 0.95293 1.20256 0.86311 0.93349 0.86436 0.97866 1.21837 1.22822 1.06444 1.09386 0.92119 1.25979 0.96982 0.94720 1.00484 1.70187 1.29920 1.13450 1.40492 0.85627 0.78437 0.78083 0.79525 1.19820 1.20794 1.18507 1.88751 1.51799 1.61832 1.28391 0.91837 0.94486 0.88757 0.88373 0.94094 0.91177 0.90414 0.89665 0.93024 0.87691 0.89528 0.91738 0.90049 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.81 16 2 O -0.42 -12.86 10.67 -144.34 -1.54 -14.40 16 3 C 0.06 1.65 6.32 71.98 0.45 2.11 16 4 C 0.05 1.57 6.32 71.98 0.45 2.02 16 5 O -0.41 -16.58 10.30 -137.79 -1.42 -18.00 16 6 C 0.07 2.64 5.65 71.98 0.41 3.05 16 7 C 0.06 2.67 3.74 31.45 0.12 2.79 16 8 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 9 C -0.13 -4.41 6.61 32.25 0.21 -4.19 16 10 C -0.14 -5.68 6.51 31.86 0.21 -5.48 16 11 C 0.19 10.59 3.35 30.32 0.10 10.69 16 12 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 13 C -0.57 -33.88 8.75 25.60 0.22 -33.66 16 14 H 0.06 3.46 7.52 -2.91 -0.02 3.44 16 15 C 0.02 1.21 5.41 84.66 0.46 1.66 16 16 N -0.90 -57.95 12.93 21.45 0.28 -57.67 16 17 Si 0.96 46.39 29.54 68.60 2.03 48.42 16 18 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 20 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 21 O -0.39 -22.00 10.21 -147.42 -1.51 -23.51 16 22 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.10 1.83 8.14 -2.39 -0.02 1.82 16 26 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 31 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.09 2.60 8.06 -2.39 -0.02 2.58 16 33 H 0.06 2.65 7.65 -2.39 -0.02 2.63 16 34 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 35 H 0.26 15.73 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -77.42 296.04 2.76 -74.66 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 1.04 Total: 9.70 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 3.89 Total: -19.19 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.28 Total: -57.67 kcal Atomic # 8 Polarization: -51.44 SS G_CDS: -4.46 Total: -55.91 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -77.42 2.76 -74.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379584992.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.425 kcal (2) G-P(sol) polarization free energy of solvation -77.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds