Wall clock time and date at job start Mon Mar 30 2020 03:17:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42903 * 114.00144 * 2 1
4 4 C 1.52997 * 109.47001 * 179.97438 * 3 2 1
5 5 O 1.42903 * 109.47181 * 64.99965 * 4 3 2
6 6 C 1.42904 * 113.99958 * 179.97438 * 5 4 3
7 7 C 1.52995 * 109.47026 * 179.97438 * 6 5 4
8 8 H 1.09000 * 110.27855 * 304.36535 * 7 6 5
9 9 C 1.55503 * 110.28399 * 182.20315 * 7 6 5
10 10 C 1.55305 * 100.69731 * 204.65557 * 9 7 6
11 11 C 1.54382 * 102.43395 * 34.13038 * 10 9 7
12 12 H 1.09007 * 109.82575 * 98.14672 * 11 10 9
13 13 C 1.50699 * 109.83066 * 219.02306 * 11 10 9
14 14 H 1.08006 * 119.99747 * 0.02562 * 13 11 10
15 15 C 1.37876 * 120.00153 * 180.02562 * 13 11 10
16 16 N 1.31508 * 120.00014 * 0.02562 * 15 13 11
17 17 Si 1.86797 * 119.99940 * 180.02562 * 15 13 11
18 18 H 1.48498 * 109.47371 * 59.99693 * 17 15 13
19 19 H 1.48502 * 109.47081 * 179.97438 * 17 15 13
20 20 H 1.48498 * 109.47146 * 299.99363 * 17 15 13
21 21 O 1.43232 * 107.59109 * 338.54226 * 11 10 9
22 22 H 1.08998 * 109.47054 * 300.00462 * 1 2 3
23 23 H 1.08997 * 109.46613 * 60.00216 * 1 2 3
24 24 H 1.09001 * 109.47271 * 180.02562 * 1 2 3
25 25 H 1.08995 * 109.47264 * 60.00080 * 3 2 1
26 26 H 1.09001 * 109.46770 * 299.99726 * 3 2 1
27 27 H 1.09000 * 109.47306 * 304.99879 * 4 3 2
28 28 H 1.08999 * 109.47463 * 184.99641 * 4 3 2
29 29 H 1.09008 * 109.47001 * 60.00433 * 6 5 4
30 30 H 1.08996 * 109.47300 * 300.00378 * 6 5 4
31 31 H 1.08999 * 111.32643 * 86.78498 * 9 7 6
32 32 H 1.08995 * 111.14910 * 322.45919 * 9 7 6
33 33 H 1.09002 * 110.85041 * 275.83884 * 10 9 7
34 34 H 1.09001 * 110.84389 * 152.42021 * 10 9 7
35 35 H 0.97005 * 120.00196 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5355 1.1846 0.0006
5 8 3.9659 0.5791 -1.2201
6 6 5.3823 0.4195 -1.3220
7 6 5.7267 -0.2353 -2.6612
8 1 5.1908 -1.1782 -2.7695
9 6 7.2604 -0.4687 -2.7685
10 6 7.4411 -0.4925 -4.3108
11 6 6.3821 0.5256 -4.7854
12 1 6.8535 1.4914 -4.9681
13 6 5.7263 0.0300 -6.0484
14 1 6.0263 -0.9145 -6.4778
15 6 4.7433 0.7823 -6.6558
16 7 4.3784 1.9326 -6.1332
17 14 3.9300 0.1675 -8.2210
18 1 3.2717 -1.1372 -7.9573
19 1 2.9134 1.1524 -8.6703
20 1 4.9577 -0.0015 -9.2794
21 8 5.4041 0.6492 -3.7462
22 1 -0.3633 0.5139 0.8899
23 1 -0.3632 0.5138 -0.8900
24 1 -0.3634 -1.0277 0.0005
25 1 1.6887 1.8464 0.8899
26 1 1.6887 1.8463 -0.8900
27 1 3.8508 0.5685 0.8427
28 1 3.9786 2.1764 0.0901
29 1 5.7363 -0.2123 -0.5073
30 1 5.8633 1.3957 -1.2600
31 1 7.5483 -1.4216 -2.3245
32 1 7.8158 0.3551 -2.3205
33 1 7.2319 -1.4847 -4.7107
34 1 8.4437 -0.1676 -4.5889
35 1 3.6866 2.4617 -6.5603
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000379584992.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:17:34
Heat of formation + Delta-G solvation = -166.080404 kcal
Electronic energy + Delta-G solvation = -16494.662465 eV
Core-core repulsion = 13685.028236 eV
Total energy + Delta-G solvation = -2809.634229 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 230.135 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-40.10313 -39.16358 -37.93931 -34.71909 -32.65013 -32.08908 -30.53846 -27.82513
-27.08572 -24.89169 -23.49875 -22.00652 -21.81636 -18.59442 -17.93788 -17.83641
-17.21423 -16.85321 -16.47476 -16.23502 -15.98602 -15.59474 -14.90912 -14.54298
-13.92006 -13.71014 -13.40706 -13.23832 -12.99732 -12.76557 -12.42123 -12.30460
-12.28957 -12.10011 -11.96473 -11.71774 -11.44382 -11.08182 -10.66589 -10.65176
-10.48953 -9.77366 -8.11030 -6.32830 1.37658 1.41963 1.48928 2.41245
2.75076 2.86782 3.08193 3.57357 3.91923 3.98357 4.15641 4.21652
4.26779 4.38943 4.40868 4.47440 4.49350 4.56967 4.60246 4.72577
4.78661 4.81684 4.83562 4.95197 4.97737 5.16503 5.29641 5.62387
5.77272 6.19769 6.20755 6.40468 6.63328 7.10291 7.44366 8.95858
Molecular weight = 230.14amu
Principal moments of inertia in cm(-1)
A = 0.020929 B = 0.007299 C = 0.005811
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1337.540097 B = 3835.113623 C = 4817.519006
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.416 6.416
3 C 0.061 3.939
4 C 0.055 3.945
5 O -0.408 6.408
6 C 0.074 3.926
7 C 0.062 3.938
8 H 0.041 0.959
9 C -0.130 4.130
10 C -0.138 4.138
11 C 0.192 3.808
12 H 0.004 0.996
13 C -0.567 4.567
14 H 0.061 0.939
15 C 0.020 3.980
16 N -0.903 5.903
17 Si 0.959 3.041
18 H -0.273 1.273
19 H -0.283 1.283
20 H -0.261 1.261
21 O -0.388 6.388
22 H 0.063 0.937
23 H 0.036 0.964
24 H 0.094 0.906
25 H 0.098 0.902
26 H 0.041 0.959
27 H 0.070 0.930
28 H 0.078 0.922
29 H 0.085 0.915
30 H 0.052 0.948
31 H 0.105 0.895
32 H 0.086 0.914
33 H 0.064 0.936
34 H 0.081 0.919
35 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.155 -2.391 14.065 14.313
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.336 6.336
3 C -0.015 4.015
4 C -0.022 4.022
5 O -0.328 6.328
6 C -0.002 4.002
7 C 0.004 3.996
8 H 0.059 0.941
9 C -0.168 4.168
10 C -0.175 4.175
11 C 0.136 3.864
12 H 0.021 0.979
13 C -0.605 4.605
14 H 0.079 0.921
15 C -0.182 4.182
16 N -0.540 5.540
17 Si 0.783 3.217
18 H -0.198 1.198
19 H -0.208 1.208
20 H -0.185 1.185
21 O -0.308 6.308
22 H 0.082 0.918
23 H 0.055 0.945
24 H 0.112 0.888
25 H 0.116 0.884
26 H 0.059 0.941
27 H 0.088 0.912
28 H 0.096 0.904
29 H 0.103 0.897
30 H 0.070 0.930
31 H 0.123 0.877
32 H 0.105 0.895
33 H 0.083 0.917
34 H 0.100 0.900
35 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -1.451 -2.316 13.894 14.160
hybrid contribution -0.542 0.178 -0.892 1.059
sum -1.993 -2.138 13.001 13.326
Atomic orbital electron populations
1.22916 0.79677 1.03727 1.00741 1.87907 1.21440 1.28638 1.95567
1.22698 0.92336 0.84972 1.01535 1.22746 0.93869 0.98426 0.87115
1.88061 1.23000 1.82310 1.39464 1.22711 0.81279 0.99944 0.96277
1.23128 0.95420 0.93184 0.87891 0.94095 1.23236 0.93694 1.03791
0.96054 1.23078 0.99361 0.99807 0.95293 1.20256 0.86311 0.93349
0.86436 0.97866 1.21837 1.22822 1.06444 1.09386 0.92119 1.25979
0.96982 0.94720 1.00484 1.70187 1.29920 1.13450 1.40492 0.85627
0.78437 0.78083 0.79525 1.19820 1.20794 1.18507 1.88751 1.51799
1.61832 1.28391 0.91837 0.94486 0.88757 0.88373 0.94094 0.91177
0.90414 0.89665 0.93024 0.87691 0.89528 0.91738 0.90049 0.93171
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.56 11.01 113.37 1.25 1.81 16
2 O -0.42 -12.86 10.67 -144.34 -1.54 -14.40 16
3 C 0.06 1.65 6.32 71.98 0.45 2.11 16
4 C 0.05 1.57 6.32 71.98 0.45 2.02 16
5 O -0.41 -16.58 10.30 -137.79 -1.42 -18.00 16
6 C 0.07 2.64 5.65 71.98 0.41 3.05 16
7 C 0.06 2.67 3.74 31.45 0.12 2.79 16
8 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16
9 C -0.13 -4.41 6.61 32.25 0.21 -4.19 16
10 C -0.14 -5.68 6.51 31.86 0.21 -5.48 16
11 C 0.19 10.59 3.35 30.32 0.10 10.69 16
12 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16
13 C -0.57 -33.88 8.75 25.60 0.22 -33.66 16
14 H 0.06 3.46 7.52 -2.91 -0.02 3.44 16
15 C 0.02 1.21 5.41 84.66 0.46 1.66 16
16 N -0.90 -57.95 12.93 21.45 0.28 -57.67 16
17 Si 0.96 46.39 29.54 68.60 2.03 48.42 16
18 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16
19 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16
20 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16
21 O -0.39 -22.00 10.21 -147.42 -1.51 -23.51 16
22 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
23 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16
24 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16
25 H 0.10 1.83 8.14 -2.39 -0.02 1.82 16
26 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16
27 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16
28 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16
29 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16
30 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16
31 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16
32 H 0.09 2.60 8.06 -2.39 -0.02 2.58 16
33 H 0.06 2.65 7.65 -2.39 -0.02 2.63 16
34 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16
35 H 0.26 15.73 8.31 -92.70 -0.77 14.95 16
Total: -1.00 -77.42 296.04 2.76 -74.66
By element:
Atomic # 1 Polarization: 8.66 SS G_CDS: 1.04 Total: 9.70 kcal
Atomic # 6 Polarization: -23.08 SS G_CDS: 3.89 Total: -19.19 kcal
Atomic # 7 Polarization: -57.95 SS G_CDS: 0.28 Total: -57.67 kcal
Atomic # 8 Polarization: -51.44 SS G_CDS: -4.46 Total: -55.91 kcal
Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal
Total: -77.42 2.76 -74.66 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379584992.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -91.425 kcal
(2) G-P(sol) polarization free energy of solvation -77.420 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.845 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.655 kcal
(6) G-S(sol) free energy of system = (1) + (5) -166.080 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds