Wall clock time and date at job start Mon Mar 30 2020 03:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99509 * 2 1 4 4 H 1.48496 * 109.47036 * 269.99939 * 3 2 1 5 5 H 1.48496 * 109.47080 * 30.00046 * 3 2 1 6 6 H 1.48498 * 109.46765 * 149.99843 * 3 2 1 7 7 C 1.37870 * 120.00434 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00161 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00029 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47196 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99869 * 66.04358 * 10 9 7 12 12 C 1.53000 * 109.46928 * 57.60657 * 11 10 9 13 13 O 1.42902 * 109.47437 * 66.29597 * 12 11 10 14 14 C 1.46899 * 111.00058 * 189.99593 * 10 9 7 15 15 H 1.09003 * 110.90875 * 305.69497 * 14 10 9 16 16 C 1.54912 * 110.99279 * 181.82977 * 14 10 9 17 17 N 1.47837 * 104.79621 * 204.83980 * 16 14 10 18 18 C 1.47442 * 108.57105 * 24.09280 * 17 16 14 19 19 C 1.54323 * 107.23158 * 359.01116 * 18 17 16 20 20 H 1.09000 * 110.70671 * 96.26972 * 19 18 17 21 21 O 1.42893 * 110.70476 * 219.33326 * 19 18 17 22 22 H 0.96996 * 120.00215 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47524 * 59.99695 * 9 7 2 24 24 H 1.09008 * 109.47091 * 299.99393 * 9 7 2 25 25 H 1.08999 * 109.46771 * 177.60262 * 11 10 9 26 26 H 1.08996 * 109.47027 * 297.60395 * 11 10 9 27 27 H 1.09004 * 109.46916 * 186.29728 * 12 11 10 28 28 H 1.08996 * 109.47187 * 306.29246 * 12 11 10 29 29 H 0.96701 * 114.00199 * 179.97438 * 13 12 11 30 30 H 1.09001 * 110.37027 * 86.00615 * 16 14 10 31 31 H 1.09000 * 110.37038 * 323.67115 * 16 14 10 32 32 H 1.00907 * 111.00207 * 261.82411 * 17 16 14 33 33 H 1.08995 * 109.89454 * 239.60853 * 18 17 16 34 34 H 1.09005 * 110.02419 * 118.49072 * 18 17 16 35 35 H 0.96703 * 114.00381 * 298.54012 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2059 -3.6156 -0.0027 11 6 2.9713 -3.6549 1.2506 12 6 2.0076 -3.7712 2.4332 13 8 1.3453 -5.0366 2.3855 14 6 1.5215 -4.8932 -0.2419 15 1 0.7114 -5.0402 0.4724 16 6 2.5217 -6.0753 -0.1975 17 7 1.8928 -7.1330 -1.0169 18 6 0.9594 -6.4990 -1.9660 19 6 0.9991 -4.9793 -1.7001 20 1 1.6855 -4.4856 -2.3880 21 8 -0.3093 -4.4142 -1.8023 22 1 -0.4850 0.8400 0.0004 23 1 0.6249 -2.5563 -0.8919 24 1 0.6243 -2.5575 0.8881 25 1 3.6401 -4.5155 1.2410 26 1 3.5568 -2.7407 1.3476 27 1 2.5654 -3.6879 3.3660 28 1 1.2683 -2.9720 2.3795 29 1 0.7179 -5.1797 3.1073 30 1 2.6569 -6.4196 0.8279 31 1 3.4781 -5.7795 -0.6286 32 1 1.4158 -7.8055 -0.4353 33 1 -0.0496 -6.8776 -1.8028 34 1 1.2713 -6.7045 -2.9900 35 1 -0.7123 -4.5105 -2.6761 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382426620.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:39 Heat of formation + Delta-G solvation = -112.558346 kcal Electronic energy + Delta-G solvation = -17494.498057 eV Core-core repulsion = 14719.477470 eV Total energy + Delta-G solvation = -2775.020587 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.62199 -38.39882 -36.46978 -36.26583 -34.47058 -30.41599 -29.95852 -28.90366 -27.02242 -24.81322 -22.84397 -22.06136 -20.53435 -18.64381 -18.31775 -18.21196 -17.38362 -17.08255 -16.64615 -16.13250 -15.45859 -14.79131 -14.43390 -14.20929 -14.06368 -13.89374 -13.57581 -13.22251 -13.03265 -12.89718 -12.79761 -12.45262 -12.39665 -12.11554 -11.80563 -11.55136 -11.24067 -10.94028 -10.69257 -10.51629 -9.43764 -8.87191 -8.15467 -6.25600 1.40121 1.41817 1.52365 2.40982 3.08722 3.13393 3.18972 3.45735 3.70934 3.90690 3.94759 4.20943 4.30625 4.37141 4.43956 4.57280 4.65768 4.76738 4.89516 4.93388 5.02971 5.11897 5.26682 5.41984 5.50209 5.71604 5.76368 6.14244 6.40375 6.45625 6.71785 6.82032 6.92206 6.94066 7.43376 8.94832 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.029426 B = 0.008784 C = 0.007661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.302454 B = 3186.966373 C = 3654.034197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.210 3.790 10 N -0.530 5.530 11 C 0.062 3.938 12 C 0.046 3.954 13 O -0.573 6.573 14 C 0.062 3.938 15 H 0.054 0.946 16 C 0.073 3.927 17 N -0.675 5.675 18 C 0.029 3.971 19 C 0.082 3.918 20 H 0.054 0.946 21 O -0.576 6.576 22 H 0.261 0.739 23 H 0.014 0.986 24 H -0.035 1.035 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.024 0.976 29 H 0.384 0.616 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.348 0.652 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.845 -12.018 1.296 12.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.560 4.560 8 H 0.079 0.921 9 C 0.083 3.917 10 N -0.253 5.253 11 C -0.066 4.066 12 C -0.034 4.034 13 O -0.380 6.380 14 C -0.048 4.048 15 H 0.072 0.928 16 C -0.057 4.057 17 N -0.304 5.304 18 C -0.101 4.101 19 C 0.022 3.978 20 H 0.072 0.928 21 O -0.382 6.382 22 H 0.070 0.930 23 H 0.032 0.968 24 H -0.018 1.018 25 H 0.106 0.894 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.042 0.958 29 H 0.233 0.767 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.164 0.836 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 4.059 -11.828 0.524 12.516 hybrid contribution -1.800 1.365 1.119 2.521 sum 2.259 -10.463 1.643 10.830 Atomic orbital electron populations 1.70130 1.07710 1.27498 1.52021 1.25885 0.95656 1.02995 0.95127 0.85448 0.78669 0.78575 0.78296 1.20194 1.20944 1.18607 1.21522 0.93477 0.91328 1.49670 0.92055 1.19404 0.90065 0.87977 0.94222 1.62236 1.27119 1.02515 1.33436 1.22219 0.95596 1.02296 0.86477 1.22811 0.95791 0.84943 0.99812 1.86483 1.60980 1.36333 1.54250 1.23227 0.96381 0.90948 0.94235 0.92839 1.22698 0.96793 0.88670 0.97508 1.61755 1.33382 1.15236 1.20077 1.23237 0.96383 0.91938 0.98541 1.23154 0.83931 0.93130 0.97584 0.92848 1.86653 1.31343 1.82070 1.38168 0.92998 0.96798 1.01758 0.89421 0.90265 0.91689 0.95777 0.76737 0.89824 0.90874 0.83585 0.91099 0.89239 0.76437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.49 13.29 21.45 0.28 -57.20 16 2 C 0.00 0.06 5.46 84.65 0.46 0.53 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.52 -29.97 8.55 25.60 0.22 -29.75 16 8 H 0.06 3.43 7.10 -2.91 -0.02 3.41 16 9 C 0.21 11.50 4.32 85.56 0.37 11.87 16 10 N -0.53 -23.52 4.60 -867.41 -3.99 -27.51 16 11 C 0.06 2.38 5.45 86.30 0.47 2.85 16 12 C 0.05 1.61 6.86 71.98 0.49 2.10 16 13 O -0.57 -17.77 9.56 -148.98 -1.42 -19.19 16 14 C 0.06 2.39 1.57 46.30 0.07 2.46 16 15 H 0.05 2.29 5.98 -2.39 -0.01 2.27 16 16 C 0.07 2.24 5.51 86.78 0.48 2.72 16 17 N -0.67 -17.89 7.39 -504.43 -3.73 -21.62 16 18 C 0.03 0.78 7.35 86.65 0.64 1.42 16 19 C 0.08 2.96 3.48 31.78 0.11 3.07 16 20 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 21 O -0.58 -22.20 11.86 -148.98 -1.77 -23.97 16 22 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 23 H 0.01 0.85 6.06 -2.39 -0.01 0.84 16 24 H -0.04 -2.10 5.81 -2.38 -0.01 -2.12 16 25 H 0.09 2.87 6.57 -2.39 -0.02 2.85 16 26 H 0.08 3.20 6.93 -2.39 -0.02 3.19 16 27 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.02 1.06 5.91 -2.39 -0.01 1.04 16 29 H 0.38 8.67 9.12 -74.06 -0.68 7.99 16 30 H 0.08 2.41 7.01 -2.39 -0.02 2.39 16 31 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 32 H 0.35 7.85 8.91 -89.69 -0.80 7.05 16 33 H 0.07 1.72 8.06 -2.39 -0.02 1.71 16 34 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.39 10.72 9.11 -74.06 -0.67 10.05 16 Total: -1.00 -70.44 273.45 -6.31 -76.75 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: -1.02 Total: 28.61 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 3.31 Total: -2.73 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -7.44 Total: -106.33 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -3.19 Total: -43.16 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -70.44 -6.31 -76.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382426620.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.812 kcal (2) G-P(sol) polarization free energy of solvation -70.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds