Wall clock time and date at job start Mon Mar 30 2020 03:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47239 * 93.33529 * 3 2 1 5 5 C 1.46499 * 119.99490 * 269.99574 * 4 3 2 6 6 C 1.39844 * 120.00423 * 89.98963 * 4 3 2 7 7 C 1.39604 * 119.83781 * 0.02562 * 6 4 3 8 8 C 1.38063 * 120.54837 * 179.97438 * 7 6 4 9 9 C 1.38741 * 120.21833 * 0.25460 * 8 7 6 10 10 N 1.38861 * 120.15642 * 179.74557 * 9 8 7 11 11 C 1.41560 * 119.67215 * 359.52129 * 9 8 7 12 12 C 1.41034 * 120.26312 * 180.20817 * 11 9 8 13 13 H 1.07998 * 119.99622 * 333.96115 * 12 11 9 14 14 C 1.39880 * 120.00007 * 153.96418 * 12 11 9 15 15 N 1.30904 * 119.99789 * 343.92820 * 14 12 11 16 16 Si 1.86797 * 120.00089 * 163.93294 * 14 12 11 17 17 H 1.48499 * 109.46952 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47212 * 119.99800 * 16 14 12 19 19 H 1.48507 * 109.46917 * 239.99728 * 16 14 12 20 20 C 1.38006 * 119.84369 * 180.02562 * 6 4 3 21 21 H 4.40640 * 5.51365 * 180.02562 * 4 1 2 22 22 H 1.08994 * 109.47640 * 333.32771 * 3 2 1 23 23 H 1.09005 * 109.46533 * 213.32516 * 3 2 1 24 24 H 1.09000 * 109.47287 * 269.99401 * 5 4 3 25 25 H 1.09005 * 109.47293 * 30.00002 * 5 4 3 26 26 H 1.08998 * 109.47014 * 149.99932 * 5 4 3 27 27 H 1.07997 * 119.73067 * 359.97438 * 7 6 4 28 28 H 1.07995 * 119.88693 * 179.97438 * 8 7 6 29 29 H 0.96999 * 120.00951 * 353.92436 * 10 9 8 30 30 H 0.97011 * 119.99639 * 173.92053 * 10 9 8 31 31 H 0.97003 * 120.00189 * 185.03094 * 15 14 12 32 32 H 1.08009 * 120.11034 * 359.97438 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 0.0812 -1.3789 5 6 3.3791 -1.1451 -2.1420 6 6 3.3667 1.3287 -1.9667 7 6 3.1327 2.4951 -1.2362 8 6 3.3576 3.7343 -1.8019 9 6 3.8150 3.8331 -3.1080 10 7 4.0358 5.0802 -3.6774 11 6 4.0600 2.6562 -3.8556 12 6 4.5292 2.7420 -5.1828 13 1 4.3165 3.6197 -5.7750 14 6 5.2701 1.6903 -5.7321 15 7 5.7965 0.7822 -4.9499 16 14 5.5086 1.5820 -7.5816 17 1 4.8181 2.7215 -8.2373 18 1 6.9587 1.6331 -7.8976 19 1 4.9380 0.3048 -8.0802 20 6 3.8262 1.4007 -3.2660 21 1 -1.0499 0.0002 0.0000 22 1 3.0098 -0.9174 0.4613 23 1 3.0089 0.8596 0.5646 24 1 4.4088 -1.4687 -1.9893 25 1 2.6987 -1.9262 -1.8027 26 1 3.2121 -0.9530 -3.2018 27 1 2.7727 2.4277 -0.2203 28 1 3.1726 4.6298 -1.2272 29 1 3.7877 5.8844 -3.1952 30 1 4.4382 5.1471 -4.5576 31 1 6.3704 0.0947 -5.3226 32 1 4.0065 0.4961 -3.8279 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384621999.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:32 Heat of formation + Delta-G solvation = 89.643611 kcal Electronic energy + Delta-G solvation = -15449.785651 eV Core-core repulsion = 12990.842119 eV Total energy + Delta-G solvation = -2458.943532 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.21409 -36.10317 -33.46980 -32.92513 -31.68523 -29.53613 -27.79948 -27.02092 -24.91490 -23.22848 -20.92043 -19.41554 -17.94840 -17.04428 -16.07088 -15.52044 -14.92708 -14.70518 -14.45684 -14.20422 -13.24223 -12.59352 -12.55923 -12.20816 -12.07430 -11.67617 -11.37255 -11.21109 -11.08512 -10.93129 -10.43349 -10.12514 -9.90804 -9.72776 -9.65009 -9.20861 -9.05614 -7.67360 -7.22296 -6.58962 -5.55169 -4.06295 2.89233 3.03658 3.13795 3.18159 3.19739 3.31110 3.46011 4.03076 4.35235 4.74100 4.85438 5.42901 5.66224 5.80952 5.87429 5.89934 6.18361 6.33871 6.37999 6.50308 6.64687 7.08431 7.16808 7.33024 7.37547 7.71054 7.88835 7.89977 7.98300 8.13490 8.46444 8.54890 8.82348 8.92841 9.00534 9.26099 9.34023 10.38132 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025892 B = 0.008614 C = 0.006959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.146019 B = 3249.808023 C = 4022.689372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.184 4.184 3 C 0.235 3.765 4 N -0.638 5.638 5 C 0.109 3.891 6 C 0.173 3.827 7 C -0.251 4.251 8 C -0.152 4.152 9 C 0.086 3.914 10 N -0.889 5.889 11 C 0.092 3.908 12 C -0.463 4.463 13 H 0.072 0.928 14 C 0.076 3.924 15 N -0.801 5.801 16 Si 0.902 3.098 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.275 1.275 20 C -0.198 4.198 21 H 0.210 0.790 22 H 0.083 0.917 23 H 0.094 0.906 24 H 0.039 0.961 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.374 0.626 30 H 0.389 0.611 31 H 0.274 0.726 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.574 -1.780 4.248 5.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.186 4.186 3 C 0.110 3.890 4 N -0.354 5.354 5 C -0.035 4.035 6 C 0.077 3.923 7 C -0.274 4.274 8 C -0.176 4.176 9 C -0.015 4.015 10 N -0.431 5.431 11 C 0.087 3.913 12 C -0.495 4.495 13 H 0.090 0.910 14 C -0.140 4.140 15 N -0.427 5.427 16 Si 0.728 3.272 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.200 1.200 20 C -0.222 4.222 21 H 0.227 0.773 22 H 0.101 0.899 23 H 0.112 0.888 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.199 0.801 30 H 0.217 0.783 31 H 0.085 0.915 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.451 -2.241 4.273 5.932 hybrid contribution -0.011 0.219 -0.948 0.973 sum -3.462 -2.022 3.325 5.209 Atomic orbital electron populations 1.24805 0.95854 1.02686 1.00952 1.24443 0.95709 0.98919 0.99573 1.18119 0.82620 1.02392 0.85838 1.46030 1.73834 1.03855 1.11652 1.21373 0.98953 0.85876 0.97261 1.17538 0.98679 0.83076 0.93045 1.19655 1.17659 0.91146 0.98988 1.19705 1.08351 0.95601 0.93948 1.17867 1.05424 0.86020 0.92172 1.41807 1.74809 1.04044 1.22479 1.17014 0.92437 0.89114 0.92711 1.19178 1.30813 1.02282 0.97182 0.90980 1.25766 0.94317 0.94472 0.99442 1.69866 1.23583 1.13017 1.36279 0.86369 0.78342 0.79071 0.83456 1.18757 1.20307 1.20035 1.20659 1.09830 0.98471 0.93234 0.77285 0.89939 0.88776 0.94294 0.93739 0.91345 0.89549 0.89691 0.80115 0.78320 0.91472 0.85733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.43 19.25 29.55 0.57 -2.86 16 2 C -0.18 -3.13 13.68 -37.12 -0.51 -3.64 16 3 C 0.23 3.92 5.63 -6.83 -0.04 3.88 16 4 N -0.64 -12.92 2.97 -182.98 -0.54 -13.47 16 5 C 0.11 1.99 10.18 59.85 0.61 2.60 16 6 C 0.17 4.14 6.55 -83.78 -0.55 3.59 16 7 C -0.25 -5.83 9.20 -39.14 -0.36 -6.20 16 8 C -0.15 -3.54 9.87 -39.46 -0.39 -3.93 16 9 C 0.09 2.11 6.79 -83.23 -0.56 1.55 16 10 N -0.89 -18.39 8.97 32.75 0.29 -18.10 16 11 C 0.09 2.48 5.57 -106.66 -0.59 1.88 16 12 C -0.46 -12.21 8.44 -37.91 -0.32 -12.53 16 13 H 0.07 1.82 6.78 -52.49 -0.36 1.46 16 14 C 0.08 1.91 5.16 -17.33 -0.09 1.83 16 15 N -0.80 -20.80 10.96 55.54 0.61 -20.19 16 16 Si 0.90 18.95 29.59 -169.99 -5.03 13.92 16 17 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 18 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 C -0.20 -5.20 7.82 -38.75 -0.30 -5.50 16 21 H 0.21 2.39 7.80 -54.09 -0.42 1.97 16 22 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 23 H 0.09 1.55 6.18 -51.93 -0.32 1.22 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 26 H 0.07 1.37 6.18 -51.93 -0.32 1.05 16 27 H 0.09 1.83 6.11 -52.49 -0.32 1.51 16 28 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.37 6.55 8.84 -40.82 -0.36 6.19 16 30 H 0.39 7.89 7.11 -40.82 -0.29 7.60 16 31 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 32 H 0.13 3.35 4.27 -52.48 -0.22 3.12 16 LS Contribution 275.87 15.07 4.16 4.16 Total: -1.00 -29.38 275.87 -6.49 -35.86 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -3.43 Total: 17.15 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -2.54 Total: -19.33 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 0.36 Total: -51.76 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.38 -6.49 -35.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384621999.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.508 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds