Wall clock time and date at job start Mon Mar 30 2020 03:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47239 * 93.33529 * 3 2 1 5 5 C 1.46499 * 119.99490 * 269.99574 * 4 3 2 6 6 C 1.39844 * 120.00423 * 89.98963 * 4 3 2 7 7 C 1.39604 * 119.83781 * 0.02562 * 6 4 3 8 8 C 1.38063 * 120.54837 * 179.97438 * 7 6 4 9 9 C 1.38741 * 120.21833 * 0.25460 * 8 7 6 10 10 N 1.38861 * 120.15642 * 179.74557 * 9 8 7 11 11 C 1.41560 * 119.67215 * 359.52129 * 9 8 7 12 12 C 1.41034 * 120.26312 * 180.20817 * 11 9 8 13 13 H 1.07998 * 119.99622 * 333.96115 * 12 11 9 14 14 C 1.39880 * 120.00007 * 153.96418 * 12 11 9 15 15 N 1.30904 * 119.99789 * 343.92820 * 14 12 11 16 16 Si 1.86797 * 120.00089 * 163.93294 * 14 12 11 17 17 H 1.48499 * 109.46952 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47212 * 119.99800 * 16 14 12 19 19 H 1.48507 * 109.46917 * 239.99728 * 16 14 12 20 20 C 1.38006 * 119.84369 * 180.02562 * 6 4 3 21 21 H 4.40640 * 5.51365 * 180.02562 * 4 1 2 22 22 H 1.08994 * 109.47640 * 333.32771 * 3 2 1 23 23 H 1.09005 * 109.46533 * 213.32516 * 3 2 1 24 24 H 1.09000 * 109.47287 * 269.99401 * 5 4 3 25 25 H 1.09005 * 109.47293 * 30.00002 * 5 4 3 26 26 H 1.08998 * 109.47014 * 149.99932 * 5 4 3 27 27 H 1.07997 * 119.73067 * 359.97438 * 7 6 4 28 28 H 1.07995 * 119.88693 * 179.97438 * 8 7 6 29 29 H 0.96999 * 120.00951 * 353.92436 * 10 9 8 30 30 H 0.97011 * 119.99639 * 173.92053 * 10 9 8 31 31 H 0.97003 * 120.00189 * 185.03094 * 15 14 12 32 32 H 1.08009 * 120.11034 * 359.97438 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 0.0812 -1.3789 5 6 3.3791 -1.1451 -2.1420 6 6 3.3667 1.3287 -1.9667 7 6 3.1327 2.4951 -1.2362 8 6 3.3576 3.7343 -1.8019 9 6 3.8150 3.8331 -3.1080 10 7 4.0358 5.0802 -3.6774 11 6 4.0600 2.6562 -3.8556 12 6 4.5292 2.7420 -5.1828 13 1 4.3165 3.6197 -5.7750 14 6 5.2701 1.6903 -5.7321 15 7 5.7965 0.7822 -4.9499 16 14 5.5086 1.5820 -7.5816 17 1 4.8181 2.7215 -8.2373 18 1 6.9587 1.6331 -7.8976 19 1 4.9380 0.3048 -8.0802 20 6 3.8262 1.4007 -3.2660 21 1 -1.0499 0.0002 0.0000 22 1 3.0098 -0.9174 0.4613 23 1 3.0089 0.8596 0.5646 24 1 4.4088 -1.4687 -1.9893 25 1 2.6987 -1.9262 -1.8027 26 1 3.2121 -0.9530 -3.2018 27 1 2.7727 2.4277 -0.2203 28 1 3.1726 4.6298 -1.2272 29 1 3.7877 5.8844 -3.1952 30 1 4.4382 5.1471 -4.5576 31 1 6.3704 0.0947 -5.3226 32 1 4.0065 0.4961 -3.8279 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384621999.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:32 Heat of formation + Delta-G solvation = 72.197984 kcal Electronic energy + Delta-G solvation = -15450.542151 eV Core-core repulsion = 12990.842119 eV Total energy + Delta-G solvation = -2459.700031 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.95926 -37.72029 -35.34539 -34.38972 -33.22261 -31.38993 -29.29631 -28.69249 -26.74212 -24.83766 -22.77287 -21.14804 -19.39833 -18.64797 -17.84629 -17.25973 -16.61339 -16.43761 -15.87402 -15.66429 -14.92984 -14.33579 -14.03503 -13.83868 -13.69607 -13.45617 -13.09906 -12.85937 -12.83077 -12.56004 -12.12427 -11.75286 -11.49479 -11.34489 -11.08212 -10.95753 -10.87091 -9.32447 -9.13842 -8.46684 -7.31491 -5.99676 1.11680 1.41861 1.49736 1.54904 1.61575 1.76997 1.97703 2.27450 2.88142 2.93588 3.63520 3.77309 3.97193 4.35959 4.41153 4.55374 4.64545 4.79151 4.91298 4.97450 5.16204 5.25585 5.36989 5.46122 5.58465 5.89044 6.07214 6.11975 6.28102 6.57392 6.75928 6.84049 7.03883 7.06988 7.14455 7.46308 7.67019 8.52546 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025892 B = 0.008614 C = 0.006959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.146019 B = 3249.808023 C = 4022.689372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.228 4.228 3 C 0.232 3.768 4 N -0.643 5.643 5 C 0.112 3.888 6 C 0.167 3.833 7 C -0.255 4.255 8 C -0.158 4.158 9 C 0.071 3.929 10 N -0.879 5.879 11 C 0.057 3.943 12 C -0.491 4.491 13 H 0.074 0.926 14 C 0.034 3.966 15 N -0.831 5.831 16 Si 0.974 3.026 17 H -0.260 1.260 18 H -0.270 1.270 19 H -0.273 1.273 20 C -0.223 4.223 21 H 0.244 0.756 22 H 0.112 0.888 23 H 0.094 0.906 24 H 0.040 0.960 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.390 0.610 30 H 0.390 0.610 31 H 0.280 0.720 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.407 -1.826 4.752 6.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.230 4.230 3 C 0.109 3.891 4 N -0.358 5.358 5 C -0.032 4.032 6 C 0.069 3.931 7 C -0.278 4.278 8 C -0.183 4.183 9 C -0.032 4.032 10 N -0.423 5.423 11 C 0.051 3.949 12 C -0.522 4.522 13 H 0.092 0.908 14 C -0.179 4.179 15 N -0.459 5.459 16 Si 0.797 3.203 17 H -0.184 1.184 18 H -0.195 1.195 19 H -0.198 1.198 20 C -0.248 4.248 21 H 0.260 0.740 22 H 0.130 0.870 23 H 0.112 0.888 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.061 0.939 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.218 0.782 30 H 0.218 0.782 31 H 0.090 0.910 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.297 -2.279 4.810 6.840 hybrid contribution 0.168 0.217 -0.978 1.016 sum -4.129 -2.061 3.832 5.998 Atomic orbital electron populations 1.25686 0.96819 1.00926 0.98843 1.24613 0.96300 1.00658 1.01457 1.18304 0.82979 1.03948 0.83828 1.46220 1.73555 1.02986 1.13067 1.21376 0.99879 0.86076 0.95831 1.17680 0.97884 0.85026 0.92545 1.19963 1.17024 0.90959 0.99857 1.20053 1.07648 0.96785 0.93766 1.18046 1.05648 0.86706 0.92750 1.41680 1.74430 1.03599 1.22561 1.17425 0.93531 0.90283 0.93613 1.19409 1.31938 1.03203 0.97677 0.90831 1.26560 0.93687 0.93805 1.03861 1.69944 1.24111 1.13600 1.38201 0.85275 0.78467 0.78949 0.77626 1.18381 1.19476 1.19776 1.20677 1.11552 0.98000 0.94533 0.73992 0.86989 0.88767 0.94144 0.90622 0.93889 0.87460 0.87091 0.78209 0.78199 0.91001 0.87286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.67 19.25 74.32 1.43 -4.24 16 2 C -0.23 -7.26 13.68 31.12 0.43 -6.84 16 3 C 0.23 7.36 5.63 84.57 0.48 7.83 16 4 N -0.64 -25.67 2.97 -732.84 -2.18 -27.85 16 5 C 0.11 4.06 10.18 127.77 1.30 5.36 16 6 C 0.17 8.02 6.55 38.14 0.25 8.27 16 7 C -0.25 -11.62 9.20 22.56 0.21 -11.41 16 8 C -0.16 -7.23 9.87 22.35 0.22 -7.01 16 9 C 0.07 3.47 6.79 38.97 0.26 3.73 16 10 N -0.88 -35.91 8.97 -50.31 -0.45 -36.36 16 11 C 0.06 3.11 5.57 -21.18 -0.12 2.99 16 12 C -0.49 -26.47 8.44 23.35 0.20 -26.27 16 13 H 0.07 3.78 6.78 -2.91 -0.02 3.76 16 14 C 0.03 1.73 5.16 85.23 0.44 2.17 16 15 N -0.83 -44.31 10.96 21.82 0.24 -44.07 16 16 Si 0.97 39.30 29.59 68.60 2.03 41.33 16 17 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 18 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 19 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 20 C -0.22 -12.08 7.82 22.81 0.18 -11.90 16 21 H 0.24 4.59 7.80 -4.42 -0.03 4.56 16 22 H 0.11 2.82 8.07 -2.39 -0.02 2.80 16 23 H 0.09 2.94 6.18 -2.38 -0.01 2.92 16 24 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.08 2.23 8.07 -2.38 -0.02 2.21 16 26 H 0.04 1.77 6.18 -2.39 -0.01 1.75 16 27 H 0.11 4.35 6.11 -2.91 -0.02 4.34 16 28 H 0.11 4.38 8.06 -2.91 -0.02 4.35 16 29 H 0.39 13.14 8.84 -92.71 -0.82 12.32 16 30 H 0.39 15.78 7.11 -92.70 -0.66 15.12 16 31 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16 32 H 0.11 6.13 4.27 -2.91 -0.01 6.12 16 Total: -1.00 -63.64 275.87 4.59 -59.05 By element: Atomic # 1 Polarization: 45.52 SS G_CDS: -0.32 Total: 45.20 kcal Atomic # 6 Polarization: -42.58 SS G_CDS: 5.27 Total: -37.30 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -2.39 Total: -108.28 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -63.64 4.59 -59.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384621999.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.251 kcal (2) G-P(sol) polarization free energy of solvation -63.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds