Wall clock time and date at job start Mon Mar 30 2020 03:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 O 1.42894 * 109.47263 * 179.97438 * 9 7 2 11 11 C 1.42906 * 114.00137 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47212 * 179.97438 * 11 10 9 13 13 O 1.42903 * 109.46939 * 65.00063 * 12 11 10 14 14 C 1.42900 * 113.99643 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.47068 * 180.02562 * 14 13 12 16 16 H 1.09004 * 110.75221 * 54.29798 * 15 14 13 17 17 C 1.55296 * 110.85145 * 177.77134 * 15 14 13 18 18 C 1.55206 * 100.82978 * 152.17721 * 17 15 14 19 19 O 1.43645 * 105.25959 * 323.82035 * 18 17 15 20 20 C 1.43240 * 109.97452 * 24.28311 * 19 18 17 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 24 24 H 1.09001 * 109.46459 * 300.00527 * 11 10 9 25 25 H 1.09006 * 109.46659 * 59.99689 * 11 10 9 26 26 H 1.08996 * 109.47051 * 184.99803 * 12 11 10 27 27 H 1.08994 * 109.47050 * 304.99783 * 12 11 10 28 28 H 1.08997 * 109.47244 * 299.99681 * 14 13 12 29 29 H 1.08999 * 109.47076 * 60.00476 * 14 13 12 30 30 H 1.08998 * 111.12941 * 270.24252 * 17 15 14 31 31 H 1.09007 * 111.12394 * 34.40525 * 17 15 14 32 32 H 1.08997 * 110.37258 * 204.80098 * 18 17 15 33 33 H 1.09003 * 110.21133 * 82.75366 * 18 17 15 34 34 H 1.08997 * 109.82883 * 238.77674 * 20 19 18 35 35 H 1.08994 * 109.90924 * 117.84402 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6482 -5.9562 0.0004 13 8 3.3884 -5.8895 1.2209 14 6 4.4302 -6.8623 1.3227 15 6 5.1513 -6.6991 2.6622 16 1 4.4426 -6.7367 3.4895 17 6 6.2554 -7.7781 2.8307 18 6 7.2496 -7.0351 3.7625 19 8 7.2100 -5.6627 3.3402 20 6 5.9625 -5.3858 2.6930 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8897 24 1 0.9453 -4.9821 0.8913 25 1 0.9447 -4.9827 -0.8887 26 1 2.1822 -6.9374 -0.0887 27 1 3.3210 -5.7957 -0.8419 28 1 4.0008 -7.8623 1.2613 29 1 5.1402 -6.7210 0.5079 30 1 5.8593 -8.6743 3.3084 31 1 6.7198 -8.0177 1.8741 32 1 8.2551 -7.4387 3.6435 33 1 6.9286 -7.1208 4.8007 34 1 6.1428 -5.0386 1.6757 35 1 5.4153 -4.6262 3.2513 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385297492.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:59 Heat of formation + Delta-G solvation = -153.917965 kcal Electronic energy + Delta-G solvation = -15998.291028 eV Core-core repulsion = 13189.184203 eV Total energy + Delta-G solvation = -2809.106826 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.61171 -37.89933 -36.46653 -33.22075 -32.80980 -30.11007 -29.06981 -26.35023 -25.39990 -22.60653 -22.48717 -22.02209 -20.73364 -17.19888 -16.96118 -16.54839 -16.15528 -15.99719 -14.99501 -14.83395 -14.43500 -14.17597 -13.68667 -13.42649 -13.20635 -12.67228 -12.28136 -11.91847 -11.67847 -11.58161 -11.32160 -11.17283 -10.96915 -10.80826 -10.66579 -10.22605 -10.05752 -9.58406 -9.50416 -8.85744 -8.60929 -8.22762 -6.44314 -4.12501 3.45771 3.48800 3.58085 3.67412 3.82442 4.29926 4.44949 4.67042 4.71833 4.75726 5.02362 5.05746 5.16378 5.29415 5.33832 5.35907 5.46776 5.48471 5.51819 5.62104 5.71797 5.87277 5.88987 6.00101 6.06754 6.11778 6.76217 6.91609 7.14152 7.30066 7.90680 8.19794 8.66060 8.83039 9.57998 10.96064 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.028164 B = 0.005018 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.950526 B = 5578.775823 C = 6426.335716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.017 3.983 3 Si 1.079 2.921 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.595 4.595 8 H 0.061 0.939 9 C 0.185 3.815 10 O -0.380 6.380 11 C 0.061 3.939 12 C 0.070 3.930 13 O -0.374 6.374 14 C 0.071 3.929 15 C -0.120 4.120 16 H 0.093 0.907 17 C -0.150 4.150 18 C 0.052 3.948 19 O -0.387 6.387 20 C 0.059 3.941 21 H 0.266 0.734 22 H -0.004 1.004 23 H -0.006 1.006 24 H 0.045 0.955 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.645 -17.350 3.904 20.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.186 4.186 3 Si 0.906 3.094 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.633 4.633 8 H 0.079 0.921 9 C 0.111 3.889 10 O -0.299 6.299 11 C -0.017 4.017 12 C -0.007 4.007 13 O -0.293 6.293 14 C -0.006 4.006 15 C -0.139 4.139 16 H 0.111 0.889 17 C -0.187 4.187 18 C -0.025 4.025 19 O -0.307 6.307 20 C -0.018 4.018 21 H 0.076 0.924 22 H 0.014 0.986 23 H 0.012 0.988 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.766 -15.378 4.076 18.668 hybrid contribution -0.413 -2.236 -0.276 2.291 sum 9.353 -17.614 3.799 20.302 Atomic orbital electron populations 1.70806 1.06838 1.30373 1.46797 1.25942 0.96407 1.02691 0.93570 0.83405 0.74720 0.74465 0.76809 1.20633 1.21146 1.21212 1.21905 0.95481 0.90386 1.55550 0.92111 1.20302 0.89439 0.85122 0.94084 1.87947 1.34517 1.12414 1.95054 1.22307 0.93886 0.85712 0.99799 1.22550 0.93958 0.97124 0.87060 1.88028 1.47176 1.55523 1.38533 1.22379 0.90065 0.91917 0.96204 1.22705 0.97283 0.95353 0.98549 0.88869 1.23306 0.96010 0.98360 1.01050 1.23364 0.99623 0.81985 0.97500 1.88414 1.37320 1.27168 1.77789 1.23199 0.83525 0.96535 0.98508 0.92360 0.98634 0.98798 0.93647 0.92965 0.92711 0.92653 0.93326 0.93062 0.89692 0.90161 0.89830 0.92236 0.90652 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.46 13.65 55.43 0.76 -27.70 16 2 C 0.02 0.50 5.46 -17.82 -0.10 0.41 16 3 Si 1.08 26.02 29.90 -169.99 -5.08 20.94 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.60 -18.25 9.43 -34.44 -0.32 -18.58 16 8 H 0.06 1.88 7.81 -52.48 -0.41 1.47 16 9 C 0.19 5.22 5.00 36.01 0.18 5.40 16 10 O -0.38 -9.66 10.29 -40.08 -0.41 -10.07 16 11 C 0.06 1.16 6.32 37.16 0.23 1.39 16 12 C 0.07 1.07 6.32 37.16 0.23 1.31 16 13 O -0.37 -6.19 10.21 -40.08 -0.41 -6.60 16 14 C 0.07 0.86 5.26 37.16 0.20 1.06 16 15 C -0.12 -1.37 3.26 -88.67 -0.29 -1.66 16 16 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 17 C -0.15 -1.27 6.64 -24.35 -0.16 -1.44 16 18 C 0.05 0.50 7.78 38.33 0.30 0.80 16 19 O -0.39 -5.36 11.36 -35.23 -0.40 -5.76 16 20 C 0.06 0.81 7.32 37.89 0.28 1.09 16 21 H 0.27 8.25 7.22 -40.82 -0.29 7.95 16 22 H 0.00 -0.12 8.01 -51.93 -0.42 -0.53 16 23 H -0.01 -0.16 8.01 -51.93 -0.42 -0.57 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.59 8.01 -51.93 -0.42 0.18 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.63 8.04 -51.92 -0.42 0.22 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 1.10 7.72 -51.93 -0.40 0.70 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 295.76 15.07 4.46 4.46 Total: -1.00 -34.38 295.76 -6.34 -40.71 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: -5.79 Total: -5.75 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 0.55 Total: -10.23 kcal Atomic # 7 Polarization: -28.46 SS G_CDS: 0.76 Total: -27.70 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -1.22 Total: -22.43 kcal Atomic # 14 Polarization: 26.02 SS G_CDS: -5.08 Total: 20.94 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.38 -6.34 -40.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385297492.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.205 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds