Wall clock time and date at job start Mon Mar 30 2020 03:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 O 1.42894 * 109.47263 * 179.97438 * 9 7 2 11 11 C 1.42906 * 114.00137 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47212 * 179.97438 * 11 10 9 13 13 O 1.42903 * 109.46939 * 65.00063 * 12 11 10 14 14 C 1.42900 * 113.99643 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.47068 * 180.02562 * 14 13 12 16 16 H 1.09004 * 110.75221 * 54.29798 * 15 14 13 17 17 C 1.55296 * 110.85145 * 177.77134 * 15 14 13 18 18 C 1.55206 * 100.82978 * 152.17721 * 17 15 14 19 19 O 1.43645 * 105.25959 * 323.82035 * 18 17 15 20 20 C 1.43240 * 109.97452 * 24.28311 * 19 18 17 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 24 24 H 1.09001 * 109.46459 * 300.00527 * 11 10 9 25 25 H 1.09006 * 109.46659 * 59.99689 * 11 10 9 26 26 H 1.08996 * 109.47051 * 184.99803 * 12 11 10 27 27 H 1.08994 * 109.47050 * 304.99783 * 12 11 10 28 28 H 1.08997 * 109.47244 * 299.99681 * 14 13 12 29 29 H 1.08999 * 109.47076 * 60.00476 * 14 13 12 30 30 H 1.08998 * 111.12941 * 270.24252 * 17 15 14 31 31 H 1.09007 * 111.12394 * 34.40525 * 17 15 14 32 32 H 1.08997 * 110.37258 * 204.80098 * 18 17 15 33 33 H 1.09003 * 110.21133 * 82.75366 * 18 17 15 34 34 H 1.08997 * 109.82883 * 238.77674 * 20 19 18 35 35 H 1.08994 * 109.90924 * 117.84402 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6482 -5.9562 0.0004 13 8 3.3884 -5.8895 1.2209 14 6 4.4302 -6.8623 1.3227 15 6 5.1513 -6.6991 2.6622 16 1 4.4426 -6.7367 3.4895 17 6 6.2554 -7.7781 2.8307 18 6 7.2496 -7.0351 3.7625 19 8 7.2100 -5.6627 3.3402 20 6 5.9625 -5.3858 2.6930 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8897 24 1 0.9453 -4.9821 0.8913 25 1 0.9447 -4.9827 -0.8887 26 1 2.1822 -6.9374 -0.0887 27 1 3.3210 -5.7957 -0.8419 28 1 4.0008 -7.8623 1.2613 29 1 5.1402 -6.7210 0.5079 30 1 5.8593 -8.6743 3.3084 31 1 6.7198 -8.0177 1.8741 32 1 8.2551 -7.4387 3.6435 33 1 6.9286 -7.1208 4.8007 34 1 6.1428 -5.0386 1.6757 35 1 5.4153 -4.6262 3.2513 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385297492.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:58 Heat of formation + Delta-G solvation = -178.741613 kcal Electronic energy + Delta-G solvation = -15999.367463 eV Core-core repulsion = 13189.184203 eV Total energy + Delta-G solvation = -2810.183260 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.55719 -39.27845 -38.14409 -35.27942 -34.00307 -31.32940 -30.22924 -28.46703 -26.45646 -24.78665 -23.60886 -23.18890 -21.66252 -19.23706 -18.21296 -17.71983 -17.65628 -17.04912 -16.32974 -16.17237 -15.94873 -15.70564 -15.43188 -14.71817 -14.27520 -14.12716 -13.86482 -13.58869 -13.09429 -12.74558 -12.64162 -12.52336 -12.22887 -12.06741 -11.91234 -11.82367 -11.68758 -10.90713 -10.87720 -10.61689 -10.53953 -10.39217 -8.86037 -6.56816 1.51660 1.60656 1.82212 2.48059 2.55457 2.93277 3.01201 3.01692 3.45572 3.78423 3.83469 4.08071 4.15455 4.20350 4.30019 4.32152 4.40669 4.48769 4.49576 4.52935 4.58231 4.71791 4.78201 4.86276 4.86938 4.89546 4.96851 5.19906 5.64383 5.89249 5.98964 6.22895 6.31086 6.63683 7.23840 8.55414 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.028164 B = 0.005018 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.950526 B = 5578.775823 C = 6426.335716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.027 4.027 3 Si 1.127 2.873 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.266 1.266 7 C -0.626 4.626 8 H 0.051 0.949 9 C 0.195 3.805 10 O -0.402 6.402 11 C 0.047 3.953 12 C 0.075 3.925 13 O -0.410 6.410 14 C 0.068 3.932 15 C -0.119 4.119 16 H 0.090 0.910 17 C -0.135 4.135 18 C 0.040 3.960 19 O -0.413 6.413 20 C 0.056 3.944 21 H 0.256 0.744 22 H -0.019 1.019 23 H -0.012 1.012 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.582 -18.798 3.811 21.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.224 4.224 3 Si 0.946 3.054 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.191 1.191 7 C -0.664 4.664 8 H 0.069 0.931 9 C 0.120 3.880 10 O -0.322 6.322 11 C -0.030 4.030 12 C -0.001 4.001 13 O -0.330 6.330 14 C -0.008 4.008 15 C -0.138 4.138 16 H 0.109 0.891 17 C -0.172 4.172 18 C -0.035 4.035 19 O -0.333 6.333 20 C -0.021 4.021 21 H 0.065 0.935 22 H -0.002 1.002 23 H 0.005 0.995 24 H 0.062 0.938 25 H 0.089 0.911 26 H 0.118 0.882 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.132 0.868 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.704 -16.882 3.983 20.382 hybrid contribution -0.696 -1.907 -0.212 2.041 sum 10.008 -18.789 3.772 21.620 Atomic orbital electron populations 1.70928 1.07670 1.29836 1.47886 1.27612 0.96470 1.06512 0.91845 0.82833 0.74086 0.70213 0.78264 1.19787 1.19476 1.19071 1.22273 0.95323 0.92196 1.56575 0.93110 1.19985 0.89288 0.85864 0.92907 1.87892 1.34911 1.14247 1.95153 1.22748 0.95809 0.83805 1.00639 1.22565 0.93211 0.97483 0.86861 1.87980 1.48514 1.57590 1.38961 1.22600 0.89308 0.92403 0.96472 1.22720 0.97673 0.95006 0.98376 0.89124 1.23299 0.94290 0.98074 1.01552 1.23684 1.01348 0.80213 0.98288 1.88382 1.37083 1.29925 1.77907 1.23100 0.84099 0.97703 0.97156 0.93488 1.00167 0.99472 0.93785 0.91076 0.88179 0.92496 0.90141 0.92684 0.86842 0.89136 0.87824 0.91347 0.92191 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.37 13.65 21.45 0.29 -58.08 16 2 C -0.03 -1.61 5.46 84.65 0.46 -1.15 16 3 Si 1.13 51.74 29.90 68.60 2.05 53.80 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.63 -39.16 9.43 25.60 0.24 -38.92 16 8 H 0.05 3.20 7.81 -2.91 -0.02 3.18 16 9 C 0.19 11.30 5.00 71.24 0.36 11.65 16 10 O -0.40 -20.84 10.29 -144.34 -1.49 -22.33 16 11 C 0.05 1.76 6.32 71.98 0.45 2.22 16 12 C 0.07 2.17 6.32 71.98 0.45 2.62 16 13 O -0.41 -13.21 10.21 -144.34 -1.47 -14.68 16 14 C 0.07 1.51 5.26 71.98 0.38 1.89 16 15 C -0.12 -2.56 3.26 -9.53 -0.03 -2.60 16 16 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 17 C -0.13 -1.90 6.64 32.14 0.21 -1.68 16 18 C 0.04 0.70 7.78 72.74 0.57 1.27 16 19 O -0.41 -11.39 11.36 -148.98 -1.69 -13.08 16 20 C 0.06 1.59 7.32 72.45 0.53 2.12 16 21 H 0.26 16.22 7.22 -92.71 -0.67 15.55 16 22 H -0.02 -1.15 8.01 -2.39 -0.02 -1.17 16 23 H -0.01 -0.72 8.01 -2.38 -0.02 -0.73 16 24 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.07 2.38 8.14 -2.38 -0.02 2.37 16 26 H 0.10 2.00 8.14 -2.39 -0.02 1.99 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.17 8.01 -2.39 -0.02 1.15 16 30 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 1.12 8.04 -2.38 -0.02 1.10 16 32 H 0.10 1.37 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.84 7.72 -2.39 -0.02 1.82 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -75.62 295.76 2.46 -73.16 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: 1.14 Total: 3.79 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 3.63 Total: -22.58 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: 0.29 Total: -58.08 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -4.65 Total: -50.09 kcal Atomic # 14 Polarization: 51.74 SS G_CDS: 2.05 Total: 53.80 kcal Total: -75.62 2.46 -73.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385297492.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.584 kcal (2) G-P(sol) polarization free energy of solvation -75.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds