Wall clock time and date at job start Mon Mar 30 2020 03:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 O 1.42905 * 109.47006 * 180.02562 * 9 7 2 11 11 C 1.42897 * 114.00263 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47175 * 179.97438 * 11 10 9 13 13 O 1.42905 * 109.46900 * 64.99889 * 12 11 10 14 14 C 1.42899 * 113.99842 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47073 * 179.97438 * 14 13 12 16 16 H 1.08999 * 110.43436 * 305.70216 * 15 14 13 17 17 C 1.54814 * 110.48756 * 183.15166 * 15 14 13 18 18 C 1.55215 * 101.98739 * 220.52033 * 17 15 14 19 19 O 1.44372 * 103.57105 * 36.88586 * 18 17 15 20 20 C 1.43747 * 106.97305 * 320.01034 * 19 18 17 21 21 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 23 23 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 24 24 H 1.09002 * 109.46717 * 300.00140 * 11 10 9 25 25 H 1.09001 * 109.47510 * 59.99667 * 11 10 9 26 26 H 1.09002 * 109.46941 * 184.99598 * 12 11 10 27 27 H 1.08991 * 109.47085 * 304.99993 * 12 11 10 28 28 H 1.09002 * 109.46903 * 300.00143 * 14 13 12 29 29 H 1.08998 * 109.47324 * 59.99783 * 14 13 12 30 30 H 1.08996 * 110.90541 * 338.64632 * 17 15 14 31 31 H 1.09007 * 110.90296 * 102.24853 * 17 15 14 32 32 H 1.09007 * 110.52139 * 278.38558 * 18 17 15 33 33 H 1.09000 * 110.77749 * 155.50980 * 18 17 15 34 34 H 1.09003 * 109.88193 * 267.09168 * 20 19 18 35 35 H 1.08997 * 110.00918 * 146.00477 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 8 2.1796 -3.5854 0.0041 11 6 1.5651 -4.8755 0.0087 12 6 2.6480 -5.9563 0.0064 13 8 3.3921 -5.8876 1.2244 14 6 4.4341 -6.8603 1.3246 15 6 5.1603 -6.6940 2.6609 16 1 5.5098 -5.6683 2.7791 17 6 6.3454 -7.6852 2.7607 18 6 6.2506 -8.1534 4.2375 19 8 4.8292 -8.2234 4.4801 20 6 4.2360 -7.0870 3.8297 21 1 -0.4850 0.8401 0.0004 22 1 0.6281 -2.5552 0.8979 23 1 0.6206 -2.5586 -0.8820 24 1 0.9480 -4.9807 0.9011 25 1 0.9417 -4.9843 -0.8789 26 1 2.1816 -6.9377 -0.0796 27 1 3.3182 -5.7972 -0.8383 28 1 4.0044 -7.8603 1.2661 29 1 5.1415 -6.7205 0.5072 30 1 6.2097 -8.5236 2.0776 31 1 7.2923 -7.1796 2.5707 32 1 6.7177 -7.4247 4.9001 33 1 6.7101 -9.1339 4.3625 34 1 4.1548 -6.2580 4.5328 35 1 3.2485 -7.3483 3.4494 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385297511.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:01 Heat of formation + Delta-G solvation = -150.810380 kcal Electronic energy + Delta-G solvation = -15899.401321 eV Core-core repulsion = 13090.429251 eV Total energy + Delta-G solvation = -2808.972071 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.64047 -37.79424 -36.29569 -33.07744 -32.62441 -30.07430 -29.03866 -26.81784 -25.40445 -22.71705 -22.37866 -21.87889 -20.56843 -17.02325 -16.56841 -16.37589 -16.13887 -15.90190 -15.11427 -14.89568 -14.44868 -14.28942 -14.03067 -13.17492 -13.04945 -12.44182 -12.24440 -11.88491 -11.63771 -11.47777 -11.23457 -11.08676 -10.83988 -10.77131 -10.70966 -10.49874 -9.98723 -9.76684 -9.43431 -9.07862 -8.81192 -8.15106 -6.08905 -4.10252 3.31784 3.36531 3.42457 3.69781 3.82190 4.36437 4.40349 4.69426 4.73463 4.87242 5.02881 5.07738 5.24214 5.27556 5.35898 5.43799 5.49031 5.58096 5.59105 5.67675 5.72358 5.85269 6.00949 6.02877 6.05786 6.23388 6.73573 7.11609 7.38614 7.45558 7.81940 8.17574 8.60299 9.03262 9.54401 11.02798 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.034899 B = 0.004390 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.125616 B = 6376.818771 C = 6768.586617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.389 6.389 11 C 0.063 3.937 12 C 0.069 3.931 13 O -0.374 6.374 14 C 0.070 3.930 15 C -0.122 4.122 16 H 0.095 0.905 17 C -0.148 4.148 18 C 0.046 3.954 19 O -0.383 6.383 20 C 0.054 3.946 21 H 0.264 0.736 22 H 0.006 0.994 23 H 0.005 0.995 24 H 0.045 0.955 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.936 -16.146 4.004 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.309 6.309 11 C -0.014 4.014 12 C -0.007 4.007 13 O -0.293 6.293 14 C -0.007 4.007 15 C -0.141 4.141 16 H 0.114 0.886 17 C -0.186 4.186 18 C -0.030 4.030 19 O -0.302 6.302 20 C -0.023 4.023 21 H 0.073 0.927 22 H 0.024 0.976 23 H 0.022 0.978 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.820 -16.009 4.272 19.260 hybrid contribution 0.153 0.890 -0.422 0.997 sum 9.973 -15.118 3.850 18.516 Atomic orbital electron populations 1.69966 1.06109 1.27128 1.50678 1.24952 0.94978 0.99423 0.95170 0.86330 0.79689 0.82242 0.78197 1.20481 1.21066 1.19619 1.21064 0.94086 0.89368 1.50661 0.91550 1.20213 0.88801 0.83665 0.95360 1.87911 1.35192 1.12658 1.95161 1.22258 0.93693 0.85647 0.99844 1.22571 0.93937 0.97221 0.87013 1.88019 1.47046 1.55440 1.38783 1.22446 0.90053 0.91830 0.96364 1.22543 0.95203 1.01367 0.94937 0.88641 1.23177 0.98438 0.99198 0.97778 1.23561 0.83143 1.01662 0.94657 1.88860 1.19293 1.46548 1.75506 1.23225 0.97373 0.88626 0.93042 0.92673 0.97637 0.97762 0.93645 0.92983 0.92822 0.92763 0.93425 0.93187 0.90329 0.89804 0.92137 0.89061 0.91909 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.14 29.54 -169.99 -5.02 17.12 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -15.51 9.43 -34.44 -0.32 -15.83 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.19 5.48 5.69 36.00 0.20 5.68 16 10 O -0.39 -9.84 10.29 -40.09 -0.41 -10.25 16 11 C 0.06 1.22 6.32 37.16 0.23 1.45 16 12 C 0.07 1.08 6.32 37.16 0.23 1.31 16 13 O -0.37 -6.25 10.13 -40.09 -0.41 -6.65 16 14 C 0.07 0.87 5.01 37.16 0.19 1.06 16 15 C -0.12 -1.40 3.32 -89.09 -0.30 -1.70 16 16 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 17 C -0.15 -1.29 6.73 -24.60 -0.17 -1.45 16 18 C 0.05 0.42 7.72 38.33 0.30 0.72 16 19 O -0.38 -4.79 11.52 -35.23 -0.41 -5.20 16 20 C 0.05 0.67 7.26 37.73 0.27 0.94 16 21 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 22 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 23 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.63 7.87 -51.93 -0.41 0.22 16 31 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 1.15 7.65 -51.93 -0.40 0.75 16 LS Contribution 296.83 15.07 4.47 4.47 Total: -1.00 -33.19 296.83 -6.34 -39.52 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: -5.85 Total: -6.17 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 0.55 Total: -6.28 kcal Atomic # 7 Polarization: -27.30 SS G_CDS: 0.74 Total: -26.56 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -1.22 Total: -22.10 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.19 -6.34 -39.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385297511.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.290 kcal (2) G-P(sol) polarization free energy of solvation -33.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds