Wall clock time and date at job start Mon Mar 30 2020 03:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 O 1.42905 * 109.47006 * 180.02562 * 9 7 2 11 11 C 1.42897 * 114.00263 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47175 * 179.97438 * 11 10 9 13 13 O 1.42905 * 109.46900 * 64.99889 * 12 11 10 14 14 C 1.42899 * 113.99842 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47073 * 179.97438 * 14 13 12 16 16 H 1.08999 * 110.43436 * 305.70216 * 15 14 13 17 17 C 1.54814 * 110.48756 * 183.15166 * 15 14 13 18 18 C 1.55215 * 101.98739 * 220.52033 * 17 15 14 19 19 O 1.44372 * 103.57105 * 36.88586 * 18 17 15 20 20 C 1.43747 * 106.97305 * 320.01034 * 19 18 17 21 21 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 23 23 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 24 24 H 1.09002 * 109.46717 * 300.00140 * 11 10 9 25 25 H 1.09001 * 109.47510 * 59.99667 * 11 10 9 26 26 H 1.09002 * 109.46941 * 184.99598 * 12 11 10 27 27 H 1.08991 * 109.47085 * 304.99993 * 12 11 10 28 28 H 1.09002 * 109.46903 * 300.00143 * 14 13 12 29 29 H 1.08998 * 109.47324 * 59.99783 * 14 13 12 30 30 H 1.08996 * 110.90541 * 338.64632 * 17 15 14 31 31 H 1.09007 * 110.90296 * 102.24853 * 17 15 14 32 32 H 1.09007 * 110.52139 * 278.38558 * 18 17 15 33 33 H 1.09000 * 110.77749 * 155.50980 * 18 17 15 34 34 H 1.09003 * 109.88193 * 267.09168 * 20 19 18 35 35 H 1.08997 * 110.00918 * 146.00477 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 8 2.1796 -3.5854 0.0041 11 6 1.5651 -4.8755 0.0087 12 6 2.6480 -5.9563 0.0064 13 8 3.3921 -5.8876 1.2244 14 6 4.4341 -6.8603 1.3246 15 6 5.1603 -6.6940 2.6609 16 1 5.5098 -5.6683 2.7791 17 6 6.3454 -7.6852 2.7607 18 6 6.2506 -8.1534 4.2375 19 8 4.8292 -8.2234 4.4801 20 6 4.2360 -7.0870 3.8297 21 1 -0.4850 0.8401 0.0004 22 1 0.6281 -2.5552 0.8979 23 1 0.6206 -2.5586 -0.8820 24 1 0.9480 -4.9807 0.9011 25 1 0.9417 -4.9843 -0.8789 26 1 2.1816 -6.9377 -0.0796 27 1 3.3182 -5.7972 -0.8383 28 1 4.0044 -7.8603 1.2661 29 1 5.1415 -6.7205 0.5072 30 1 6.2097 -8.5236 2.0776 31 1 7.2923 -7.1796 2.5707 32 1 6.7177 -7.4247 4.9001 33 1 6.7101 -9.1339 4.3625 34 1 4.1548 -6.2580 4.5328 35 1 3.2485 -7.3483 3.4494 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385297511.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:00 Heat of formation + Delta-G solvation = -174.359653 kcal Electronic energy + Delta-G solvation = -15900.422494 eV Core-core repulsion = 13090.429251 eV Total energy + Delta-G solvation = -2809.993244 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.53539 -39.15268 -37.98998 -34.96919 -33.91688 -31.33068 -30.18589 -28.86674 -26.42558 -24.56294 -23.59284 -23.22213 -21.47440 -18.67113 -18.02943 -17.79894 -17.36114 -17.05800 -16.58062 -16.14153 -16.00810 -15.86496 -15.50326 -14.69067 -14.04138 -13.82537 -13.50435 -13.32822 -13.05620 -12.86377 -12.72539 -12.55986 -12.26377 -12.12742 -11.99693 -11.78063 -11.59603 -11.30823 -10.89675 -10.68187 -10.52616 -10.26038 -8.33462 -6.46190 1.39256 1.42587 1.54745 2.34256 2.63844 3.00195 3.00872 3.17160 3.56814 3.83473 3.86685 4.16857 4.22768 4.24223 4.33979 4.34992 4.51962 4.56893 4.59761 4.71094 4.74506 4.80513 4.87087 4.87828 4.90183 5.03123 5.15595 5.17426 5.53215 5.88871 5.94264 6.27941 6.52276 6.80231 7.25844 8.79070 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.034899 B = 0.004390 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.125616 B = 6376.818771 C = 6768.586617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.985 3.015 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.551 4.551 8 H 0.060 0.940 9 C 0.207 3.793 10 O -0.408 6.408 11 C 0.050 3.950 12 C 0.075 3.925 13 O -0.408 6.408 14 C 0.067 3.933 15 C -0.124 4.124 16 H 0.081 0.919 17 C -0.138 4.138 18 C 0.040 3.960 19 O -0.403 6.403 20 C 0.053 3.947 21 H 0.272 0.728 22 H -0.017 1.017 23 H -0.010 1.010 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.053 0.947 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.405 -16.507 3.654 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.589 4.589 8 H 0.078 0.922 9 C 0.132 3.868 10 O -0.328 6.328 11 C -0.027 4.027 12 C -0.001 4.001 13 O -0.328 6.328 14 C -0.009 4.009 15 C -0.143 4.143 16 H 0.100 0.900 17 C -0.176 4.176 18 C -0.036 4.036 19 O -0.322 6.322 20 C -0.023 4.023 21 H 0.080 0.920 22 H 0.001 0.999 23 H 0.008 0.992 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.112 0.888 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.072 0.928 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.293 -16.402 3.920 20.296 hybrid contribution -0.328 0.895 -0.284 0.994 sum 10.965 -15.508 3.636 19.338 Atomic orbital electron populations 1.70070 1.07777 1.28730 1.50392 1.25984 0.95994 1.03426 0.93772 0.85159 0.78299 0.76842 0.78958 1.19022 1.19779 1.19002 1.21394 0.94075 0.90938 1.52484 0.92172 1.19849 0.88648 0.84740 0.93518 1.87859 1.35395 1.14309 1.95218 1.22669 0.95567 0.83949 1.00517 1.22565 0.93252 0.97383 0.86946 1.87973 1.48370 1.57279 1.39217 1.22648 0.89411 0.91707 0.97095 1.22562 0.96087 1.01473 0.94173 0.90014 1.23175 0.97840 0.98835 0.97715 1.23817 0.81509 1.03243 0.95068 1.88836 1.21290 1.46390 1.75727 1.23158 0.97401 0.88481 0.93298 0.91957 0.99881 0.99180 0.94006 0.91234 0.88774 0.92276 0.91655 0.92056 0.89120 0.88050 0.91560 0.86850 0.92843 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.99 45.06 29.54 68.60 2.03 47.08 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.55 -33.92 9.43 25.60 0.24 -33.68 16 8 H 0.06 3.67 7.81 -2.92 -0.02 3.65 16 9 C 0.21 12.11 5.69 71.23 0.41 12.52 16 10 O -0.41 -21.04 10.29 -144.34 -1.49 -22.53 16 11 C 0.05 1.91 6.32 71.98 0.45 2.37 16 12 C 0.07 2.22 6.32 71.98 0.45 2.68 16 13 O -0.41 -13.39 10.13 -144.34 -1.46 -14.85 16 14 C 0.07 1.57 5.01 71.98 0.36 1.93 16 15 C -0.12 -2.74 3.32 -9.80 -0.03 -2.77 16 16 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 17 C -0.14 -2.08 6.73 31.97 0.22 -1.86 16 18 C 0.04 0.64 7.72 72.74 0.56 1.20 16 19 O -0.40 -9.73 11.52 -148.98 -1.72 -11.44 16 20 C 0.05 1.31 7.26 72.36 0.52 1.84 16 21 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 22 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 23 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 1.16 7.87 -2.39 -0.02 1.15 16 31 H 0.10 1.18 8.14 -2.38 -0.02 1.17 16 32 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 2.09 7.65 -2.39 -0.02 2.07 16 Total: -1.00 -71.89 296.83 2.33 -69.55 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: 1.04 Total: 3.65 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 3.65 Total: -14.92 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.28 Total: -56.55 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -4.66 Total: -48.82 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -71.89 2.33 -69.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385297511.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.805 kcal (2) G-P(sol) polarization free energy of solvation -71.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds