Wall clock time and date at job start Mon Mar 30 2020 03:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99872 * 2 1 4 4 H 1.48504 * 109.46948 * 270.00053 * 3 2 1 5 5 H 1.48496 * 109.47010 * 30.00225 * 3 2 1 6 6 H 1.48501 * 109.47036 * 150.00086 * 3 2 1 7 7 C 1.37875 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99868 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00004 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.47010 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99725 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47085 * 180.02562 * 11 10 9 13 13 O 1.42896 * 109.46947 * 64.99901 * 12 11 10 14 14 C 1.42899 * 114.00352 * 180.02562 * 13 12 11 15 15 C 1.53175 * 109.54545 * 269.56219 * 14 13 12 16 16 C 1.53094 * 109.16661 * 183.14980 * 15 14 13 17 17 O 1.42898 * 109.41211 * 57.60371 * 16 15 14 18 18 C 1.42897 * 114.10001 * 298.84343 * 17 16 15 19 19 C 1.53089 * 109.41656 * 61.16248 * 18 17 16 20 20 H 0.97006 * 119.99748 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46442 * 60.00720 * 9 7 2 22 22 H 1.09001 * 109.47574 * 300.00872 * 9 7 2 23 23 H 1.08999 * 109.47221 * 60.00054 * 11 10 9 24 24 H 1.09002 * 109.47310 * 300.00257 * 11 10 9 25 25 H 1.09000 * 109.47001 * 305.00240 * 12 11 10 26 26 H 1.09001 * 109.47043 * 185.00051 * 12 11 10 27 27 H 1.09004 * 109.61153 * 29.77680 * 14 13 12 28 28 H 1.09004 * 109.52259 * 303.05246 * 15 14 13 29 29 H 1.09006 * 109.52330 * 63.24079 * 15 14 13 30 30 H 1.09006 * 109.47665 * 297.62062 * 16 15 14 31 31 H 1.08993 * 109.47955 * 177.58818 * 16 15 14 32 32 H 1.09002 * 109.48425 * 301.17758 * 18 17 16 33 33 H 1.09001 * 109.49443 * 181.15303 * 18 17 16 34 34 H 1.08997 * 109.52675 * 182.48845 * 19 18 17 35 35 H 1.08995 * 109.52428 * 62.29514 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5652 -4.8754 -0.0011 12 6 2.6481 -5.9562 -0.0004 13 8 3.3865 -5.8897 1.2212 14 6 4.4289 -6.8618 1.3240 15 6 3.8811 -8.1331 1.9799 16 6 5.0218 -9.1386 2.1574 17 8 6.0589 -8.5466 2.9422 18 6 6.6414 -7.3811 2.3556 19 6 5.5659 -6.3049 2.1861 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5566 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 0.9453 -4.9822 -0.8913 24 1 0.9447 -4.9827 0.8886 25 1 3.3223 -5.7955 -0.8417 26 1 2.1822 -6.9375 -0.0904 27 1 4.8075 -7.0988 0.3297 28 1 3.4576 -7.8871 2.9537 29 1 3.1086 -8.5669 1.3448 30 1 5.4180 -9.4150 1.1802 31 1 4.6465 -10.0285 2.6626 32 1 7.0589 -7.6344 1.3811 33 1 7.4332 -7.0048 3.0034 34 1 5.9983 -5.4313 1.6985 35 1 5.1765 -6.0219 3.1640 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385348860.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:57 Heat of formation + Delta-G solvation = -153.495767 kcal Electronic energy + Delta-G solvation = -16101.340232 eV Core-core repulsion = 13292.251714 eV Total energy + Delta-G solvation = -2809.088518 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.66839 -37.64707 -36.29605 -32.89089 -32.41654 -31.29351 -29.37225 -26.80692 -24.41324 -23.75336 -22.37760 -21.88175 -20.43355 -17.11588 -16.46801 -16.25736 -16.08089 -15.76997 -15.06695 -14.84503 -14.44567 -14.26692 -14.06651 -13.32739 -13.18756 -12.70284 -12.45156 -11.84501 -11.51920 -11.43700 -11.30571 -10.98031 -10.84372 -10.75561 -10.52454 -10.41603 -10.01467 -9.81152 -9.36076 -9.07477 -8.81209 -8.15122 -6.08756 -4.10124 3.31983 3.36725 3.42756 3.61452 3.79383 4.36475 4.60762 4.68565 4.79528 4.87401 4.97764 5.03451 5.22978 5.27721 5.31246 5.37120 5.47254 5.50536 5.57667 5.72680 5.86322 5.98658 6.04328 6.07894 6.12646 6.25149 6.97703 7.11423 7.42290 7.45860 7.82027 8.17581 8.60211 9.03302 9.54564 11.02940 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.042795 B = 0.004509 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.118100 B = 6208.892435 C = 6714.839492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.389 6.389 11 C 0.064 3.936 12 C 0.068 3.932 13 O -0.364 6.364 14 C 0.087 3.913 15 C -0.180 4.180 16 C 0.065 3.935 17 O -0.384 6.384 18 C 0.065 3.935 19 C -0.155 4.155 20 H 0.264 0.736 21 H 0.004 0.996 22 H 0.006 0.994 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.869 -17.197 1.933 19.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.309 6.309 11 C -0.014 4.014 12 C -0.009 4.009 13 O -0.282 6.282 14 C 0.029 3.971 15 C -0.218 4.218 16 C -0.012 4.012 17 O -0.303 6.303 18 C -0.012 4.012 19 C -0.192 4.192 20 H 0.073 0.927 21 H 0.022 0.978 22 H 0.024 0.976 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.929 -16.974 2.258 19.312 hybrid contribution -0.188 0.799 -0.547 0.986 sum 8.740 -16.176 1.711 18.465 Atomic orbital electron populations 1.69969 1.06112 1.27121 1.50704 1.24950 0.94977 0.99424 0.95166 0.86331 0.79701 0.82236 0.78194 1.20481 1.21065 1.19603 1.21062 0.94086 0.89356 1.50639 0.91546 1.20216 0.88810 0.83678 0.95349 1.87912 1.35167 1.12630 1.95157 1.22253 0.93695 0.85679 0.99799 1.22618 0.94180 0.97123 0.86963 1.88095 1.46981 1.54836 1.38334 1.22027 0.88647 0.88461 0.97963 1.22761 0.99122 0.96754 1.03142 1.22540 0.87505 0.95518 0.95661 1.87921 1.52257 1.42751 1.47384 1.22597 0.94994 0.85016 0.98600 1.22287 0.95648 0.99355 1.01957 0.92679 0.97779 0.97633 0.93020 0.93674 0.92795 0.92969 0.92388 0.90021 0.90827 0.93243 0.88712 0.93129 0.88319 0.89777 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -15.53 9.43 -34.44 -0.32 -15.86 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.49 5.69 36.01 0.20 5.70 16 10 O -0.39 -9.87 10.29 -40.09 -0.41 -10.28 16 11 C 0.06 1.23 6.32 37.16 0.23 1.46 16 12 C 0.07 1.07 6.14 37.16 0.23 1.29 16 13 O -0.36 -6.24 9.96 -40.09 -0.40 -6.64 16 14 C 0.09 1.13 2.70 -26.55 -0.07 1.06 16 15 C -0.18 -1.95 5.76 -26.59 -0.15 -2.10 16 16 C 0.06 0.60 6.84 37.21 0.25 0.86 16 17 O -0.38 -4.38 10.76 -35.23 -0.38 -4.76 16 18 C 0.06 0.64 6.84 37.20 0.25 0.90 16 19 C -0.15 -1.89 5.79 -26.59 -0.15 -2.04 16 20 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 21 H 0.00 0.13 8.14 -51.93 -0.42 -0.30 16 22 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 26 H 0.05 0.65 7.99 -51.93 -0.42 0.23 16 27 H 0.06 0.68 7.79 -51.93 -0.40 0.27 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 0.71 7.99 -51.93 -0.42 0.29 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 293.69 15.07 4.43 4.43 Total: -1.00 -33.26 293.69 -6.52 -39.78 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -5.85 Total: -5.88 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 0.38 Total: -7.19 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 0.74 Total: -26.61 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -1.19 Total: -21.68 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.26 -6.52 -39.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385348860.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.717 kcal (2) G-P(sol) polarization free energy of solvation -33.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds