Wall clock time and date at job start Mon Mar 30 2020 03:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99872 * 2 1 4 4 H 1.48504 * 109.46948 * 270.00053 * 3 2 1 5 5 H 1.48496 * 109.47010 * 30.00225 * 3 2 1 6 6 H 1.48501 * 109.47036 * 150.00086 * 3 2 1 7 7 C 1.37875 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99868 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00004 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.47010 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99725 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47085 * 180.02562 * 11 10 9 13 13 O 1.42896 * 109.46947 * 64.99901 * 12 11 10 14 14 C 1.42899 * 114.00352 * 180.02562 * 13 12 11 15 15 C 1.53175 * 109.54545 * 269.56219 * 14 13 12 16 16 C 1.53094 * 109.16661 * 183.14980 * 15 14 13 17 17 O 1.42898 * 109.41211 * 57.60371 * 16 15 14 18 18 C 1.42897 * 114.10001 * 298.84343 * 17 16 15 19 19 C 1.53089 * 109.41656 * 61.16248 * 18 17 16 20 20 H 0.97006 * 119.99748 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46442 * 60.00720 * 9 7 2 22 22 H 1.09001 * 109.47574 * 300.00872 * 9 7 2 23 23 H 1.08999 * 109.47221 * 60.00054 * 11 10 9 24 24 H 1.09002 * 109.47310 * 300.00257 * 11 10 9 25 25 H 1.09000 * 109.47001 * 305.00240 * 12 11 10 26 26 H 1.09001 * 109.47043 * 185.00051 * 12 11 10 27 27 H 1.09004 * 109.61153 * 29.77680 * 14 13 12 28 28 H 1.09004 * 109.52259 * 303.05246 * 15 14 13 29 29 H 1.09006 * 109.52330 * 63.24079 * 15 14 13 30 30 H 1.09006 * 109.47665 * 297.62062 * 16 15 14 31 31 H 1.08993 * 109.47955 * 177.58818 * 16 15 14 32 32 H 1.09002 * 109.48425 * 301.17758 * 18 17 16 33 33 H 1.09001 * 109.49443 * 181.15303 * 18 17 16 34 34 H 1.08997 * 109.52675 * 182.48845 * 19 18 17 35 35 H 1.08995 * 109.52428 * 62.29514 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5652 -4.8754 -0.0011 12 6 2.6481 -5.9562 -0.0004 13 8 3.3865 -5.8897 1.2212 14 6 4.4289 -6.8618 1.3240 15 6 3.8811 -8.1331 1.9799 16 6 5.0218 -9.1386 2.1574 17 8 6.0589 -8.5466 2.9422 18 6 6.6414 -7.3811 2.3556 19 6 5.5659 -6.3049 2.1861 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5566 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 0.9453 -4.9822 -0.8913 24 1 0.9447 -4.9827 0.8886 25 1 3.3223 -5.7955 -0.8417 26 1 2.1822 -6.9375 -0.0904 27 1 4.8075 -7.0988 0.3297 28 1 3.4576 -7.8871 2.9537 29 1 3.1086 -8.5669 1.3448 30 1 5.4180 -9.4150 1.1802 31 1 4.6465 -10.0285 2.6626 32 1 7.0589 -7.6344 1.3811 33 1 7.4332 -7.0048 3.0034 34 1 5.9983 -5.4313 1.6985 35 1 5.1765 -6.0219 3.1640 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385348860.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:57 Heat of formation + Delta-G solvation = -177.054611 kcal Electronic energy + Delta-G solvation = -16102.361820 eV Core-core repulsion = 13292.251714 eV Total energy + Delta-G solvation = -2810.110106 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.59107 -39.00714 -37.93607 -34.97801 -33.60390 -32.10277 -30.94949 -28.89348 -25.33173 -24.66387 -24.49196 -23.34272 -21.34545 -18.68073 -18.21295 -17.62693 -17.10922 -16.98195 -16.62135 -16.10189 -15.86834 -15.84465 -15.38635 -14.66911 -14.30701 -14.20777 -13.62213 -13.33067 -13.18883 -12.94023 -12.69359 -12.42302 -12.36688 -12.21160 -11.99772 -11.70677 -11.35982 -11.28994 -10.90322 -10.66623 -10.44826 -10.27105 -8.34029 -6.46834 1.38836 1.42213 1.54396 2.33785 2.60635 2.96256 2.99615 3.15296 3.74924 3.77924 3.98176 4.05286 4.18048 4.20837 4.27099 4.32051 4.50614 4.52768 4.61992 4.69750 4.75494 4.75747 4.83392 4.86116 5.04315 5.13410 5.14385 5.21328 5.52485 5.93426 6.21940 6.30548 6.51434 6.79242 7.25219 8.78502 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.042795 B = 0.004509 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.118100 B = 6208.892435 C = 6714.839492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.985 3.015 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.551 4.551 8 H 0.060 0.940 9 C 0.207 3.793 10 O -0.408 6.408 11 C 0.050 3.950 12 C 0.074 3.926 13 O -0.401 6.401 14 C 0.079 3.921 15 C -0.174 4.174 16 C 0.063 3.937 17 O -0.403 6.403 18 C 0.069 3.931 19 C -0.157 4.157 20 H 0.272 0.728 21 H -0.009 1.009 22 H -0.017 1.017 23 H 0.070 0.930 24 H 0.040 0.960 25 H 0.059 0.941 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.976 -17.805 1.374 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.589 4.589 8 H 0.078 0.922 9 C 0.132 3.868 10 O -0.328 6.328 11 C -0.027 4.027 12 C -0.002 4.002 13 O -0.321 6.321 14 C 0.021 3.979 15 C -0.212 4.212 16 C -0.013 4.013 17 O -0.322 6.322 18 C -0.008 4.008 19 C -0.195 4.195 20 H 0.081 0.919 21 H 0.009 0.991 22 H 0.001 0.999 23 H 0.088 0.912 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.112 0.888 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.130 0.870 32 H 0.088 0.912 33 H 0.129 0.871 34 H 0.094 0.906 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.035 -17.616 1.696 20.344 hybrid contribution -0.576 0.899 -0.362 1.128 sum 9.458 -16.716 1.334 19.253 Atomic orbital electron populations 1.70070 1.07773 1.28737 1.50383 1.25982 0.95997 1.03421 0.93751 0.85159 0.78290 0.76831 0.78977 1.18977 1.19751 1.19040 1.21387 0.94057 0.90933 1.52513 0.92211 1.19855 0.88653 0.84746 0.93518 1.87862 1.35388 1.14294 1.95216 1.22665 0.95547 0.83984 1.00479 1.22615 0.93465 0.97351 0.86804 1.88047 1.48335 1.56809 1.38910 1.22302 0.87902 0.88500 0.99166 1.22717 1.00120 0.96208 1.02188 1.22704 0.86528 0.95307 0.96757 1.87903 1.52797 1.42997 1.48465 1.22650 0.94236 0.83945 0.99919 1.22320 0.96343 1.00141 1.00648 0.91946 0.99115 0.99934 0.91155 0.94124 0.92311 0.88811 0.90688 0.91912 0.89241 0.91305 0.86994 0.91236 0.87072 0.90556 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.99 45.20 29.54 68.60 2.03 47.22 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -34.05 9.43 25.60 0.24 -33.81 16 8 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 9 C 0.21 12.16 5.69 71.24 0.41 12.56 16 10 O -0.41 -21.17 10.29 -144.34 -1.49 -22.66 16 11 C 0.05 1.94 6.32 71.98 0.45 2.40 16 12 C 0.07 2.22 6.14 71.98 0.44 2.66 16 13 O -0.40 -13.63 9.96 -144.34 -1.44 -15.06 16 14 C 0.08 1.94 2.70 30.71 0.08 2.03 16 15 C -0.17 -3.49 5.76 30.68 0.18 -3.31 16 16 C 0.06 1.03 6.84 72.01 0.49 1.52 16 17 O -0.40 -8.44 10.76 -148.98 -1.60 -10.04 16 18 C 0.07 1.26 6.84 72.01 0.49 1.75 16 19 C -0.16 -3.78 5.79 30.68 0.18 -3.61 16 20 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 21 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 22 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 23 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 24 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.06 1.70 8.09 -2.39 -0.02 1.68 16 26 H 0.09 2.04 7.99 -2.39 -0.02 2.03 16 27 H 0.08 1.58 7.79 -2.38 -0.02 1.56 16 28 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.09 1.48 7.99 -2.38 -0.02 1.46 16 30 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -72.31 293.69 2.25 -70.06 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 1.04 Total: 4.07 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 3.43 Total: -16.93 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.28 Total: -56.65 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -4.53 Total: -47.76 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -72.31 2.25 -70.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385348860.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.999 kcal (2) G-P(sol) polarization free energy of solvation -72.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds