Wall clock time and date at job start Mon Mar 30 2020 03:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99987 * 2 1 4 4 H 1.48491 * 109.47281 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46998 * 300.00808 * 3 2 1 6 6 H 1.48504 * 109.46580 * 60.00337 * 3 2 1 7 7 C 1.37883 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99662 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.46785 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99778 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46728 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47150 * 65.00694 * 12 11 10 14 14 N 1.45398 * 111.00067 * 179.97438 * 13 12 11 15 15 C 1.47017 * 111.00057 * 243.63014 * 14 13 12 16 16 C 1.53102 * 109.25669 * 177.60549 * 15 14 13 17 17 O 1.43015 * 109.25895 * 56.85244 * 16 15 14 18 18 C 1.43016 * 113.73856 * 301.32828 * 17 16 15 19 19 C 1.47019 * 111.00067 * 119.99743 * 14 13 12 20 20 H 0.97001 * 120.00525 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47198 * 60.00162 * 9 7 2 22 22 H 1.08997 * 109.47040 * 300.00196 * 9 7 2 23 23 H 1.09000 * 109.47187 * 300.00233 * 11 10 9 24 24 H 1.09001 * 109.46558 * 60.00281 * 11 10 9 25 25 H 1.09000 * 109.46738 * 185.00163 * 12 11 10 26 26 H 1.08994 * 109.47465 * 305.00250 * 12 11 10 27 27 H 1.00896 * 111.00234 * 56.04077 * 13 12 11 28 28 H 1.08999 * 109.50716 * 297.54342 * 15 14 13 29 29 H 1.08998 * 109.50425 * 57.67164 * 15 14 13 30 30 H 1.08995 * 109.51049 * 296.91156 * 16 15 14 31 31 H 1.08999 * 109.53625 * 176.80386 * 16 15 14 32 32 H 1.08996 * 109.50550 * 298.73649 * 18 17 16 33 33 H 1.09000 * 109.54259 * 178.62807 * 18 17 16 34 34 H 1.08997 * 109.50681 * 302.32242 * 19 14 13 35 35 H 1.09000 * 109.51037 * 62.45910 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6483 -5.9561 -0.0006 13 7 3.4091 -5.8876 1.2540 14 7 4.4492 -6.9030 1.2888 15 6 4.2098 -7.8656 2.3739 16 6 5.2920 -8.9479 2.3368 17 8 6.5790 -8.3317 2.4339 18 6 6.8458 -7.3887 1.3924 19 6 5.7793 -6.2905 1.4199 20 1 -0.4851 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8896 23 1 0.9453 -4.9822 0.8903 24 1 0.9448 -4.9826 -0.8898 25 1 2.1822 -6.9374 -0.0898 26 1 3.3212 -5.7956 -0.8429 27 1 2.7978 -5.9691 2.0526 28 1 4.2445 -7.3489 3.3330 29 1 3.2304 -8.3256 2.2428 30 1 5.2227 -9.5000 1.3996 31 1 5.1521 -9.6322 3.1736 32 1 6.8216 -7.8954 0.4277 33 1 7.8295 -6.9447 1.5457 34 1 5.9456 -5.6009 0.5924 35 1 5.8392 -5.7487 2.3638 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385390180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:42 Heat of formation + Delta-G solvation = -59.345988 kcal Electronic energy + Delta-G solvation = -16103.208403 eV Core-core repulsion = 13330.495277 eV Total energy + Delta-G solvation = -2772.713126 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.48078 -37.06833 -35.81467 -32.96099 -32.15012 -31.32488 -28.42386 -26.76841 -24.83147 -24.08361 -22.28466 -21.39195 -20.57635 -17.17514 -16.39222 -16.30889 -15.81597 -15.31218 -15.16135 -15.10073 -14.76105 -14.31964 -14.20162 -13.31185 -13.10042 -12.63977 -12.44681 -11.85231 -11.62187 -11.53652 -11.26904 -10.95056 -10.78660 -10.76587 -10.48232 -10.02652 -9.82687 -9.27668 -9.04890 -8.79838 -8.14070 -8.04479 -6.08370 -4.09287 3.15424 3.31130 3.37468 3.44637 3.67712 4.37358 4.56696 4.69329 4.89199 4.93197 4.97866 5.16271 5.25991 5.28329 5.38825 5.45003 5.56579 5.63564 5.67182 5.84475 5.96370 5.99368 6.09946 6.36822 6.67276 6.92867 7.07568 7.14168 7.45652 7.64898 7.83726 8.19171 8.63094 9.05503 9.55600 11.03388 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.041740 B = 0.004531 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.662650 B = 6178.671879 C = 6648.378859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.193 3.807 10 O -0.381 6.381 11 C 0.065 3.935 12 C 0.078 3.922 13 N -0.514 5.514 14 N -0.382 5.382 15 C -0.010 4.010 16 C 0.070 3.930 17 O -0.388 6.388 18 C 0.064 3.936 19 C 0.031 3.969 20 H 0.263 0.737 21 H 0.003 0.997 22 H 0.003 0.997 23 H 0.033 0.967 24 H 0.046 0.954 25 H 0.038 0.962 26 H 0.083 0.917 27 H 0.330 0.670 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.196 -16.921 3.206 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.549 4.549 8 H 0.085 0.915 9 C 0.118 3.882 10 O -0.301 6.301 11 C -0.014 4.014 12 C -0.051 4.051 13 N -0.236 5.236 14 N -0.197 5.197 15 C -0.139 4.139 16 C -0.008 4.008 17 O -0.306 6.306 18 C -0.014 4.014 19 C -0.097 4.097 20 H 0.072 0.928 21 H 0.021 0.979 22 H 0.021 0.979 23 H 0.051 0.949 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.101 0.899 27 H 0.148 0.852 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.782 -16.557 2.669 18.930 hybrid contribution -0.922 0.601 0.777 1.347 sum 7.859 -15.956 3.446 18.117 Atomic orbital electron populations 1.69972 1.06116 1.26975 1.50940 1.24951 0.94957 0.99427 0.95235 0.86292 0.80084 0.82630 0.77567 1.19453 1.20877 1.20888 1.21107 0.94140 0.89332 1.50285 0.91458 1.20200 0.88864 0.83917 0.95174 1.87963 1.34715 1.12372 1.95044 1.22258 0.93795 0.86259 0.99123 1.21944 0.95008 0.95611 0.92577 1.63875 1.15029 1.39806 1.04868 1.65402 1.00695 1.11073 1.42535 1.23275 1.00427 0.95695 0.94549 1.22599 0.82057 0.93863 1.02326 1.87970 1.34120 1.57970 1.50535 1.22778 0.98205 0.89447 0.90980 1.22732 0.87328 0.96929 1.02755 0.92778 0.97885 0.97906 0.94862 0.93586 0.94338 0.89861 0.85167 0.93192 0.89919 0.92278 0.88442 0.92303 0.88069 0.88728 0.93355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -15.30 9.43 -34.44 -0.32 -15.62 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.19 5.37 5.69 36.01 0.20 5.58 16 10 O -0.38 -9.36 10.27 -35.23 -0.36 -9.72 16 11 C 0.06 1.20 6.22 37.16 0.23 1.43 16 12 C 0.08 1.21 6.52 -3.83 -0.02 1.18 16 13 N -0.51 -7.99 6.70 -10.37 -0.07 -8.06 16 14 N -0.38 -5.09 4.85 -113.49 -0.55 -5.64 16 15 C -0.01 -0.11 5.62 -3.71 -0.02 -0.13 16 16 C 0.07 0.67 7.01 37.21 0.26 0.93 16 17 O -0.39 -4.50 10.83 -35.23 -0.38 -4.89 16 18 C 0.06 0.67 7.01 37.21 0.26 0.93 16 19 C 0.03 0.40 6.12 -3.71 -0.02 0.38 16 20 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 21 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 22 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.33 4.80 8.14 -174.66 -1.42 3.38 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 294.12 15.07 4.43 4.43 Total: -1.00 -32.62 294.12 -7.63 -40.25 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -6.88 Total: -3.16 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 0.47 Total: -3.81 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.12 Total: -40.21 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.74 Total: -14.61 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.62 -7.63 -40.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385390180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.097 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds