Wall clock time and date at job start Mon Mar 30 2020 03:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99987 * 2 1 4 4 H 1.48491 * 109.47281 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46998 * 300.00808 * 3 2 1 6 6 H 1.48504 * 109.46580 * 60.00337 * 3 2 1 7 7 C 1.37883 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99662 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.46785 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99778 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46728 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47150 * 65.00694 * 12 11 10 14 14 N 1.45398 * 111.00067 * 179.97438 * 13 12 11 15 15 C 1.47017 * 111.00057 * 243.63014 * 14 13 12 16 16 C 1.53102 * 109.25669 * 177.60549 * 15 14 13 17 17 O 1.43015 * 109.25895 * 56.85244 * 16 15 14 18 18 C 1.43016 * 113.73856 * 301.32828 * 17 16 15 19 19 C 1.47019 * 111.00067 * 119.99743 * 14 13 12 20 20 H 0.97001 * 120.00525 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47198 * 60.00162 * 9 7 2 22 22 H 1.08997 * 109.47040 * 300.00196 * 9 7 2 23 23 H 1.09000 * 109.47187 * 300.00233 * 11 10 9 24 24 H 1.09001 * 109.46558 * 60.00281 * 11 10 9 25 25 H 1.09000 * 109.46738 * 185.00163 * 12 11 10 26 26 H 1.08994 * 109.47465 * 305.00250 * 12 11 10 27 27 H 1.00896 * 111.00234 * 56.04077 * 13 12 11 28 28 H 1.08999 * 109.50716 * 297.54342 * 15 14 13 29 29 H 1.08998 * 109.50425 * 57.67164 * 15 14 13 30 30 H 1.08995 * 109.51049 * 296.91156 * 16 15 14 31 31 H 1.08999 * 109.53625 * 176.80386 * 16 15 14 32 32 H 1.08996 * 109.50550 * 298.73649 * 18 17 16 33 33 H 1.09000 * 109.54259 * 178.62807 * 18 17 16 34 34 H 1.08997 * 109.50681 * 302.32242 * 19 14 13 35 35 H 1.09000 * 109.51037 * 62.45910 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6483 -5.9561 -0.0006 13 7 3.4091 -5.8876 1.2540 14 7 4.4492 -6.9030 1.2888 15 6 4.2098 -7.8656 2.3739 16 6 5.2920 -8.9479 2.3368 17 8 6.5790 -8.3317 2.4339 18 6 6.8458 -7.3887 1.3924 19 6 5.7793 -6.2905 1.4199 20 1 -0.4851 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8896 23 1 0.9453 -4.9822 0.8903 24 1 0.9448 -4.9826 -0.8898 25 1 2.1822 -6.9374 -0.0898 26 1 3.3212 -5.7956 -0.8429 27 1 2.7978 -5.9691 2.0526 28 1 4.2445 -7.3489 3.3330 29 1 3.2304 -8.3256 2.2428 30 1 5.2227 -9.5000 1.3996 31 1 5.1521 -9.6322 3.1736 32 1 6.8216 -7.8954 0.4277 33 1 7.8295 -6.9447 1.5457 34 1 5.9456 -5.6009 0.5924 35 1 5.8392 -5.7487 2.3638 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385390180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:42 Heat of formation + Delta-G solvation = -84.241488 kcal Electronic energy + Delta-G solvation = -16104.287953 eV Core-core repulsion = 13330.495277 eV Total energy + Delta-G solvation = -2773.792676 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.38555 -38.74535 -37.05242 -34.99080 -33.58649 -32.18067 -30.01084 -28.58906 -25.96052 -24.96165 -24.46991 -22.77233 -21.49596 -18.66221 -18.13494 -17.58310 -17.11316 -16.68387 -16.56549 -16.12586 -15.97560 -15.79152 -15.54745 -14.85740 -14.53375 -14.13034 -13.70669 -13.35578 -13.07293 -12.83390 -12.63916 -12.53789 -12.37420 -12.32936 -11.94938 -11.64361 -11.25497 -10.88422 -10.74020 -10.34738 -10.20140 -9.16311 -8.32208 -6.43969 1.39778 1.41117 1.56123 2.09979 2.35184 2.89881 3.01623 3.19840 3.64269 3.84857 4.09621 4.15795 4.19835 4.26641 4.29375 4.35334 4.52554 4.54698 4.67601 4.70392 4.78616 4.84030 4.94804 4.97156 5.05166 5.19620 5.55495 5.66822 5.92701 5.98218 6.12263 6.53538 6.57477 6.85536 7.28346 8.80373 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.041740 B = 0.004531 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.662650 B = 6178.671879 C = 6648.378859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.398 6.398 11 C 0.056 3.944 12 C 0.092 3.908 13 N -0.539 5.539 14 N -0.383 5.383 15 C -0.010 4.010 16 C 0.069 3.931 17 O -0.402 6.402 18 C 0.070 3.930 19 C 0.030 3.970 20 H 0.271 0.729 21 H -0.014 1.014 22 H -0.016 1.016 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.334 0.666 28 H 0.041 0.959 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.068 0.932 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.976 -17.472 3.332 19.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.132 3.868 10 O -0.318 6.318 11 C -0.022 4.022 12 C -0.037 4.037 13 N -0.261 5.261 14 N -0.198 5.198 15 C -0.139 4.139 16 C -0.008 4.008 17 O -0.321 6.321 18 C -0.007 4.007 19 C -0.099 4.099 20 H 0.080 0.920 21 H 0.004 0.996 22 H 0.002 0.998 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.152 0.848 28 H 0.060 0.940 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.086 0.914 33 H 0.136 0.864 34 H 0.099 0.901 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 9.554 -17.138 2.797 19.820 hybrid contribution -1.198 0.667 0.758 1.567 sum 8.357 -16.471 3.556 18.809 Atomic orbital electron populations 1.70067 1.07712 1.28560 1.50708 1.25941 0.95950 1.03317 0.93928 0.85147 0.78618 0.77379 0.78322 1.19000 1.19512 1.19636 1.21414 0.94005 0.90986 1.51990 0.92315 1.19818 0.88667 0.84909 0.93364 1.87917 1.34821 1.13951 1.95117 1.22595 0.95271 0.84311 1.00006 1.21752 0.94031 0.95618 0.92326 1.63780 1.15655 1.41746 1.04918 1.65416 1.00052 1.10520 1.43826 1.23383 1.01933 0.95362 0.93229 1.22777 0.80671 0.93488 1.03900 1.87956 1.35114 1.58054 1.50981 1.22804 0.97997 0.88635 0.91300 1.22770 0.88142 0.97732 1.01258 0.92048 0.99583 0.99780 0.94023 0.92543 0.91202 0.90994 0.84776 0.94050 0.88342 0.91400 0.86053 0.91394 0.86351 0.90067 0.95010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.98 45.12 29.54 68.60 2.03 47.14 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -33.34 9.43 25.60 0.24 -33.10 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 9 C 0.21 11.90 5.69 71.24 0.41 12.31 16 10 O -0.40 -19.94 10.27 -148.98 -1.53 -21.47 16 11 C 0.06 2.08 6.22 71.98 0.45 2.53 16 12 C 0.09 2.76 6.52 86.30 0.56 3.33 16 13 N -0.54 -16.48 6.70 -186.73 -1.25 -17.73 16 14 N -0.38 -9.81 4.85 -512.96 -2.49 -12.30 16 15 C -0.01 -0.20 5.62 86.31 0.49 0.29 16 16 C 0.07 1.16 7.01 72.02 0.50 1.66 16 17 O -0.40 -8.58 10.83 -148.98 -1.61 -10.19 16 18 C 0.07 1.37 7.01 72.02 0.50 1.88 16 19 C 0.03 0.76 6.12 86.32 0.53 1.29 16 20 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 21 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 22 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 23 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 24 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.33 9.53 8.14 -204.85 -1.67 7.87 16 28 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -69.76 294.12 -1.04 -70.80 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -0.61 Total: 8.97 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 4.14 Total: -8.95 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -3.46 Total: -86.30 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -3.14 Total: -31.66 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -69.76 -1.04 -70.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385390180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.443 kcal (2) G-P(sol) polarization free energy of solvation -69.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds