Wall clock time and date at job start Mon Mar 30 2020 02:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47201 * 22.69239 * 3 2 1 5 5 C 1.53003 * 109.47212 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47288 * 180.02562 * 5 4 3 7 7 C 1.32201 * 120.00066 * 113.91000 * 6 5 4 8 8 C 1.46915 * 120.83394 * 356.76015 * 7 6 5 9 9 C 1.34379 * 119.36882 * 180.02562 * 8 7 6 10 10 N 1.36424 * 121.22278 * 0.02562 * 9 8 7 11 11 H 0.96998 * 119.08960 * 179.97438 * 10 9 8 12 12 C 1.37776 * 121.81791 * 359.97438 * 10 9 8 13 13 C 1.40181 * 119.74060 * 180.28045 * 12 10 9 14 14 H 1.07995 * 119.99540 * 215.64025 * 13 12 10 15 15 C 1.40351 * 119.99899 * 35.63396 * 13 12 10 16 16 N 1.30580 * 120.00230 * 7.96364 * 15 13 12 17 17 Si 1.86801 * 119.99603 * 187.95821 * 15 13 12 18 18 H 1.48502 * 109.46929 * 90.00338 * 17 15 13 19 19 H 1.48501 * 109.47319 * 210.00181 * 17 15 13 20 20 H 1.48507 * 109.47345 * 330.00339 * 17 15 13 21 21 C 1.39065 * 120.51417 * 0.02562 * 12 10 9 22 22 H 4.44649 * 5.63293 * 179.97438 * 4 1 2 23 23 H 1.09001 * 109.46784 * 262.69045 * 3 2 1 24 24 H 1.09001 * 109.47077 * 142.69488 * 3 2 1 25 25 H 1.08996 * 109.47163 * 59.99769 * 4 3 2 26 26 H 1.09001 * 109.47308 * 300.00107 * 4 3 2 27 27 H 1.09001 * 109.46689 * 59.99856 * 5 4 3 28 28 H 1.09001 * 109.47160 * 300.00307 * 5 4 3 29 29 H 1.07999 * 120.31720 * 0.03895 * 8 7 6 30 30 H 1.08000 * 119.38824 * 180.02562 * 9 8 7 31 31 H 0.97005 * 119.99978 * 180.02562 * 16 15 13 32 32 H 1.07995 * 120.63061 * 179.97438 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.3299 -0.5565 5 6 4.6866 -1.3290 -0.5571 6 7 5.1755 -2.6028 -1.0905 7 6 5.8330 -2.6305 -2.2371 8 6 6.0222 -1.4060 -3.0264 9 6 6.6948 -1.4680 -4.1881 10 7 7.2045 -2.6469 -4.6480 11 1 7.6845 -2.6563 -5.4909 12 6 7.0563 -3.8245 -3.9484 13 6 7.6030 -5.0102 -4.4588 14 1 7.0851 -5.9475 -4.3191 15 6 8.8233 -4.9790 -5.1514 16 7 9.5258 -3.8789 -5.1873 17 14 9.4425 -6.5115 -6.0218 18 1 8.9354 -6.5270 -7.4175 19 1 10.9274 -6.5076 -6.0347 20 1 8.9569 -7.7181 -5.3053 21 6 6.3730 -3.8452 -2.7374 22 1 -1.0498 -0.0004 0.0000 23 1 3.0092 0.1316 1.0193 24 1 3.0089 0.8183 -0.6228 25 1 2.7933 -1.4608 -1.5757 26 1 2.7936 -2.1475 0.0664 27 1 5.0502 -1.1979 0.4621 28 1 5.0492 -0.5114 -1.1802 29 1 5.6247 -0.4648 -2.6763 30 1 6.8345 -0.5679 -4.7684 31 1 10.3690 -3.8572 -5.6663 32 1 6.2554 -4.7672 -2.1876 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389598467.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:10 Heat of formation + Delta-G solvation = 75.196912 kcal Electronic energy + Delta-G solvation = -14614.213893 eV Core-core repulsion = 12154.643905 eV Total energy + Delta-G solvation = -2459.569988 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.56692 -35.96347 -34.32574 -33.41758 -31.35118 -30.52467 -28.55999 -26.48153 -24.88751 -21.83014 -21.30947 -19.84673 -18.11396 -17.79207 -16.59590 -15.47780 -15.16956 -14.92406 -14.21208 -13.83764 -13.66252 -13.09478 -12.79095 -12.69837 -12.00394 -11.80421 -11.50489 -11.32159 -11.10758 -10.91833 -10.72353 -10.42684 -10.17747 -9.99755 -9.88238 -9.63865 -9.36744 -8.13949 -7.53571 -7.16354 -5.93265 -4.79512 2.65083 2.71820 2.92917 2.94193 2.95354 2.97576 3.17238 3.71758 4.27194 4.51042 4.66204 5.27121 5.41190 5.49583 5.58982 5.71513 5.94999 6.03447 6.22477 6.32216 6.42218 6.49560 6.70284 6.74427 6.83581 6.89090 6.91346 7.40452 7.70497 7.74249 7.77762 7.97345 8.22672 8.36929 8.78468 8.89536 9.70820 9.85363 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.059327 B = 0.004487 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.843323 B = 6239.102102 C = 6406.886804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.170 4.170 3 C -0.017 4.017 4 C -0.105 4.105 5 C 0.060 3.940 6 N -0.669 5.669 7 C 0.281 3.719 8 C -0.303 4.303 9 C 0.126 3.874 10 N -0.598 5.598 11 H 0.411 0.589 12 C 0.338 3.662 13 C -0.481 4.481 14 H 0.101 0.899 15 C 0.077 3.923 16 N -0.823 5.823 17 Si 0.924 3.076 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.258 1.258 21 C -0.344 4.344 22 H 0.214 0.786 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.027 0.973 29 H 0.118 0.882 30 H 0.131 0.869 31 H 0.289 0.711 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.143 5.131 -1.036 6.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.170 4.170 3 C -0.054 4.054 4 C -0.143 4.143 5 C -0.071 4.071 6 N -0.395 5.395 7 C 0.117 3.883 8 C -0.333 4.333 9 C -0.004 4.004 10 N -0.205 5.205 11 H 0.248 0.752 12 C 0.229 3.771 13 C -0.515 4.515 14 H 0.118 0.882 15 C -0.140 4.140 16 N -0.452 5.452 17 Si 0.748 3.252 18 H -0.192 1.192 19 H -0.201 1.201 20 H -0.181 1.181 21 C -0.373 4.373 22 H 0.231 0.769 23 H 0.102 0.898 24 H 0.101 0.899 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.136 0.864 30 H 0.148 0.852 31 H 0.100 0.900 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.305 4.745 -0.313 6.414 hybrid contribution 0.532 0.409 -1.134 1.317 sum -3.773 5.153 -1.446 6.549 Atomic orbital electron populations 1.24797 0.95885 1.02085 1.02273 1.23413 0.94796 0.99419 0.99410 1.18867 0.84178 0.99971 1.02392 1.21596 0.97311 0.94625 1.00811 1.21771 0.92552 0.94084 0.98725 1.73375 1.27855 1.21772 1.16462 1.20309 0.87826 0.90976 0.89171 1.22292 1.12023 1.00084 0.98876 1.21260 0.94243 0.89017 0.95833 1.42068 1.49721 1.05859 1.22901 0.75209 1.17662 0.87617 0.83660 0.88163 1.19415 1.04845 0.94662 1.32531 0.88151 1.26072 0.95838 0.98473 0.93607 1.69426 1.13105 1.28601 1.34029 0.86019 0.78130 0.81251 0.79768 1.19161 1.20113 1.18149 1.20392 1.21021 0.96904 0.98939 0.76915 0.89781 0.89947 0.92520 0.91799 0.93523 0.95440 0.86395 0.85165 0.89993 0.86721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.01 19.25 29.55 0.57 -2.44 16 2 C -0.17 -2.49 13.34 -37.12 -0.50 -2.99 16 3 C -0.02 -0.24 5.70 -29.52 -0.17 -0.41 16 4 C -0.11 -1.85 5.49 -26.73 -0.15 -2.00 16 5 C 0.06 1.20 6.24 -4.04 -0.03 1.17 16 6 N -0.67 -16.43 10.62 -57.24 -0.61 -17.04 16 7 C 0.28 6.95 6.80 -82.74 -0.56 6.39 16 8 C -0.30 -6.45 9.37 -37.43 -0.35 -6.80 16 9 C 0.13 2.46 11.15 -16.87 -0.19 2.27 16 10 N -0.60 -12.93 4.80 -10.83 -0.05 -12.98 16 11 H 0.41 8.42 7.04 -40.82 -0.29 8.13 16 12 C 0.34 8.25 6.21 -84.16 -0.52 7.73 16 13 C -0.48 -11.47 9.01 -38.06 -0.34 -11.82 16 14 H 0.10 2.34 7.86 -52.49 -0.41 1.92 16 15 C 0.08 1.71 5.25 -17.29 -0.09 1.62 16 16 N -0.82 -18.47 11.48 55.57 0.64 -17.83 16 17 Si 0.92 16.79 29.57 -169.99 -5.03 11.76 16 18 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 19 H -0.28 -4.99 7.11 56.52 0.40 -4.59 16 20 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 21 C -0.34 -8.84 9.83 -37.82 -0.37 -9.21 16 22 H 0.21 1.91 7.80 -54.10 -0.42 1.49 16 23 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.03 0.53 5.26 -51.93 -0.27 0.25 16 29 H 0.12 2.27 5.92 -52.49 -0.31 1.96 16 30 H 0.13 1.95 8.06 -52.49 -0.42 1.52 16 31 H 0.29 5.91 8.29 -40.82 -0.34 5.57 16 32 H 0.11 3.02 8.06 -52.49 -0.42 2.59 16 LS Contribution 284.44 15.07 4.29 4.29 Total: -1.00 -27.68 284.44 -7.26 -34.93 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -3.80 Total: 13.35 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -2.70 Total: -16.49 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.02 Total: -47.85 kcal Atomic # 14 Polarization: 16.79 SS G_CDS: -5.03 Total: 11.76 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.68 -7.26 -34.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389598467.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.131 kcal (2) G-P(sol) polarization free energy of solvation -27.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds