Wall clock time and date at job start Mon Mar 30 2020 02:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47201 * 22.69239 * 3 2 1 5 5 C 1.53003 * 109.47212 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47288 * 180.02562 * 5 4 3 7 7 C 1.32201 * 120.00066 * 113.91000 * 6 5 4 8 8 C 1.46915 * 120.83394 * 356.76015 * 7 6 5 9 9 C 1.34379 * 119.36882 * 180.02562 * 8 7 6 10 10 N 1.36424 * 121.22278 * 0.02562 * 9 8 7 11 11 H 0.96998 * 119.08960 * 179.97438 * 10 9 8 12 12 C 1.37776 * 121.81791 * 359.97438 * 10 9 8 13 13 C 1.40181 * 119.74060 * 180.28045 * 12 10 9 14 14 H 1.07995 * 119.99540 * 215.64025 * 13 12 10 15 15 C 1.40351 * 119.99899 * 35.63396 * 13 12 10 16 16 N 1.30580 * 120.00230 * 7.96364 * 15 13 12 17 17 Si 1.86801 * 119.99603 * 187.95821 * 15 13 12 18 18 H 1.48502 * 109.46929 * 90.00338 * 17 15 13 19 19 H 1.48501 * 109.47319 * 210.00181 * 17 15 13 20 20 H 1.48507 * 109.47345 * 330.00339 * 17 15 13 21 21 C 1.39065 * 120.51417 * 0.02562 * 12 10 9 22 22 H 4.44649 * 5.63293 * 179.97438 * 4 1 2 23 23 H 1.09001 * 109.46784 * 262.69045 * 3 2 1 24 24 H 1.09001 * 109.47077 * 142.69488 * 3 2 1 25 25 H 1.08996 * 109.47163 * 59.99769 * 4 3 2 26 26 H 1.09001 * 109.47308 * 300.00107 * 4 3 2 27 27 H 1.09001 * 109.46689 * 59.99856 * 5 4 3 28 28 H 1.09001 * 109.47160 * 300.00307 * 5 4 3 29 29 H 1.07999 * 120.31720 * 0.03895 * 8 7 6 30 30 H 1.08000 * 119.38824 * 180.02562 * 9 8 7 31 31 H 0.97005 * 119.99978 * 180.02562 * 16 15 13 32 32 H 1.07995 * 120.63061 * 179.97438 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.3299 -0.5565 5 6 4.6866 -1.3290 -0.5571 6 7 5.1755 -2.6028 -1.0905 7 6 5.8330 -2.6305 -2.2371 8 6 6.0222 -1.4060 -3.0264 9 6 6.6948 -1.4680 -4.1881 10 7 7.2045 -2.6469 -4.6480 11 1 7.6845 -2.6563 -5.4909 12 6 7.0563 -3.8245 -3.9484 13 6 7.6030 -5.0102 -4.4588 14 1 7.0851 -5.9475 -4.3191 15 6 8.8233 -4.9790 -5.1514 16 7 9.5258 -3.8789 -5.1873 17 14 9.4425 -6.5115 -6.0218 18 1 8.9354 -6.5270 -7.4175 19 1 10.9274 -6.5076 -6.0347 20 1 8.9569 -7.7181 -5.3053 21 6 6.3730 -3.8452 -2.7374 22 1 -1.0498 -0.0004 0.0000 23 1 3.0092 0.1316 1.0193 24 1 3.0089 0.8183 -0.6228 25 1 2.7933 -1.4608 -1.5757 26 1 2.7936 -2.1475 0.0664 27 1 5.0502 -1.1979 0.4621 28 1 5.0492 -0.5114 -1.1802 29 1 5.6247 -0.4648 -2.6763 30 1 6.8345 -0.5679 -4.7684 31 1 10.3690 -3.8572 -5.6663 32 1 6.2554 -4.7672 -2.1876 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389598467.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:10 Heat of formation + Delta-G solvation = 58.771405 kcal Electronic energy + Delta-G solvation = -14614.926156 eV Core-core repulsion = 12154.643905 eV Total energy + Delta-G solvation = -2460.282252 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.29664 -37.44897 -35.87284 -35.01900 -32.75872 -32.22972 -30.14030 -28.16305 -26.44420 -23.46069 -22.92173 -21.52063 -19.75415 -18.92439 -18.34846 -17.10933 -16.70594 -16.50852 -15.74183 -15.27542 -15.04889 -14.64656 -14.45035 -14.14362 -13.44970 -13.33537 -13.04469 -12.89154 -12.79966 -12.51745 -12.41259 -11.92449 -11.73542 -11.34227 -11.25261 -10.99820 -10.98940 -9.88757 -9.28995 -8.87670 -7.71247 -6.66689 0.98435 1.07576 1.44031 1.55772 1.59817 1.87830 1.91041 2.19334 2.56791 2.94818 3.43166 3.55326 4.03037 4.10026 4.21228 4.47356 4.52788 4.67631 4.83505 4.84342 4.94591 4.98957 5.10332 5.16363 5.19759 5.30007 5.39378 5.66348 5.84000 6.00978 6.12010 6.42924 6.58284 6.70476 6.99007 7.16694 7.94417 8.15380 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.059327 B = 0.004487 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.843323 B = 6239.102102 C = 6406.886804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.220 4.220 3 C -0.007 4.007 4 C -0.092 4.092 5 C 0.058 3.942 6 N -0.709 5.709 7 C 0.261 3.739 8 C -0.321 4.321 9 C 0.139 3.861 10 N -0.597 5.597 11 H 0.417 0.583 12 C 0.331 3.669 13 C -0.509 4.509 14 H 0.093 0.907 15 C 0.050 3.950 16 N -0.835 5.835 17 Si 0.995 3.005 18 H -0.253 1.253 19 H -0.268 1.268 20 H -0.265 1.265 21 C -0.388 4.388 22 H 0.249 0.751 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.038 0.962 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.039 0.961 29 H 0.140 0.860 30 H 0.187 0.813 31 H 0.301 0.699 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.942 6.427 -2.399 7.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.220 4.220 3 C -0.044 4.044 4 C -0.130 4.130 5 C -0.072 4.072 6 N -0.435 5.435 7 C 0.098 3.902 8 C -0.350 4.350 9 C 0.010 3.990 10 N -0.205 5.205 11 H 0.255 0.745 12 C 0.221 3.779 13 C -0.542 4.542 14 H 0.111 0.889 15 C -0.167 4.167 16 N -0.463 5.463 17 Si 0.815 3.185 18 H -0.178 1.178 19 H -0.193 1.193 20 H -0.190 1.190 21 C -0.417 4.417 22 H 0.265 0.735 23 H 0.116 0.884 24 H 0.115 0.885 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.158 0.842 30 H 0.204 0.796 31 H 0.113 0.887 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.110 6.074 -1.670 7.522 hybrid contribution 0.469 0.003 -0.702 0.844 sum -3.641 6.077 -2.371 7.470 Atomic orbital electron populations 1.25712 0.96833 0.99833 1.00315 1.23718 0.95545 1.01454 1.01305 1.18725 0.84507 0.97990 1.03209 1.21398 0.95586 0.96415 0.99638 1.21845 0.93957 0.92680 0.98749 1.73253 1.28235 1.24922 1.17059 1.20495 0.87874 0.92002 0.89859 1.22400 1.13499 0.99523 0.99567 1.21975 0.91830 0.89749 0.95417 1.42071 1.49828 1.05827 1.22812 0.74520 1.17737 0.87155 0.85095 0.87873 1.19618 1.06185 0.94480 1.33954 0.88885 1.26791 0.95076 1.01535 0.93310 1.69424 1.13482 1.29997 1.33357 0.84979 0.77692 0.76975 0.78843 1.17760 1.19271 1.18958 1.20357 1.24226 0.96786 1.00379 0.73506 0.88415 0.88516 0.94306 0.93446 0.93051 0.94320 0.84234 0.79617 0.88744 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.96 19.25 74.32 1.43 -3.53 16 2 C -0.22 -6.16 13.34 31.12 0.42 -5.75 16 3 C -0.01 -0.20 5.70 28.79 0.16 -0.04 16 4 C -0.09 -3.28 5.49 30.59 0.17 -3.11 16 5 C 0.06 2.36 6.24 86.38 0.54 2.90 16 6 N -0.71 -36.15 10.62 -335.01 -3.56 -39.71 16 7 C 0.26 13.38 6.80 42.30 0.29 13.67 16 8 C -0.32 -13.45 9.37 23.66 0.22 -13.23 16 9 C 0.14 5.15 11.15 83.10 0.93 6.08 16 10 N -0.60 -25.39 4.80 -188.18 -0.90 -26.30 16 11 H 0.42 16.49 7.04 -92.71 -0.65 15.83 16 12 C 0.33 16.60 6.21 38.88 0.24 16.84 16 13 C -0.51 -24.83 9.01 23.26 0.21 -24.62 16 14 H 0.09 4.52 7.86 -2.91 -0.02 4.50 16 15 C 0.05 2.14 5.25 85.39 0.45 2.59 16 16 N -0.84 -36.28 11.48 21.89 0.25 -36.03 16 17 Si 0.99 33.34 29.57 68.60 2.03 35.36 16 18 H -0.25 -7.97 7.11 99.48 0.71 -7.27 16 19 H -0.27 -8.63 7.11 99.48 0.71 -7.93 16 20 H -0.27 -9.18 7.11 99.48 0.71 -8.47 16 21 C -0.39 -21.11 9.83 23.41 0.23 -20.88 16 22 H 0.25 3.58 7.80 -4.43 -0.03 3.55 16 23 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 24 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.04 1.46 5.26 -2.39 -0.01 1.45 16 29 H 0.14 5.13 5.92 -2.91 -0.02 5.11 16 30 H 0.19 4.73 8.06 -2.91 -0.02 4.70 16 31 H 0.30 11.67 8.29 -92.70 -0.77 10.90 16 32 H 0.09 4.98 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -62.08 284.44 3.57 -58.50 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: 0.47 Total: 37.22 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: 5.28 Total: -29.06 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -4.21 Total: -102.03 kcal Atomic # 14 Polarization: 33.34 SS G_CDS: 2.03 Total: 35.36 kcal Total: -62.08 3.57 -58.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389598467.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.274 kcal (2) G-P(sol) polarization free energy of solvation -62.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds