Wall clock time and date at job start Mon Mar 30 2020 03:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47162 * 158.65713 * 3 2 1 5 5 H 1.08997 * 109.47142 * 55.00209 * 4 3 2 6 6 C 1.52998 * 109.47199 * 175.00049 * 4 3 2 7 7 N 1.46500 * 109.47286 * 295.00077 * 4 3 2 8 8 C 1.38819 * 120.00091 * 154.99793 * 7 4 3 9 9 C 1.39796 * 119.58583 * 0.02562 * 8 7 4 10 10 C 1.38597 * 119.48997 * 179.97438 * 9 8 7 11 11 C 1.38384 * 118.68467 * 0.02562 * 10 9 8 12 12 C 1.40559 * 119.15044 * 359.97438 * 11 10 9 13 13 C 1.41311 * 119.78922 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99532 * 353.78366 * 13 12 11 15 15 C 1.40020 * 120.00223 * 173.78214 * 13 12 11 16 16 N 1.30747 * 120.00284 * 6.34814 * 15 13 12 17 17 Si 1.86800 * 120.00074 * 186.35347 * 15 13 12 18 18 H 1.48506 * 109.47413 * 94.98289 * 17 15 13 19 19 H 1.48503 * 109.47351 * 214.98331 * 17 15 13 20 20 H 1.48504 * 109.47104 * 334.98064 * 17 15 13 21 21 N 1.31958 * 119.58422 * 179.72881 * 8 7 4 22 22 H 4.44652 * 5.63269 * 180.02562 * 4 1 2 23 23 H 1.09002 * 109.47054 * 278.66098 * 3 2 1 24 24 H 1.09006 * 109.47099 * 38.65940 * 3 2 1 25 25 H 1.08998 * 109.47297 * 300.00040 * 6 4 3 26 26 H 1.09001 * 109.47430 * 60.00060 * 6 4 3 27 27 H 1.09003 * 109.47122 * 179.97438 * 6 4 3 28 28 H 0.97001 * 120.00095 * 334.99733 * 7 4 3 29 29 H 1.08002 * 120.25396 * 359.95924 * 9 8 7 30 30 H 1.08000 * 120.65922 * 180.02562 * 10 9 8 31 31 H 1.08000 * 120.42962 * 179.97438 * 11 10 9 32 32 H 0.96996 * 120.00273 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.3444 -0.5250 5 1 2.7205 2.1526 0.0629 6 6 4.6802 1.3925 -0.4086 7 7 2.7678 1.4987 -1.9293 8 6 2.6366 2.7672 -2.4778 9 6 2.8769 3.8914 -1.6823 10 6 2.7459 5.1569 -2.2321 11 6 2.3778 5.2687 -3.5614 12 6 2.1499 4.1007 -4.3093 13 6 1.7730 4.1992 -5.6676 14 1 1.5631 5.1660 -6.1010 15 6 1.6716 3.0435 -6.4517 16 7 1.8035 1.8655 -5.9000 17 14 1.3480 3.1848 -8.2860 18 1 2.6378 3.1427 -9.0210 19 1 0.4906 2.0549 -8.7259 20 1 0.6584 4.4690 -8.5696 21 7 2.2923 2.8966 -3.7450 22 1 -1.0502 -0.0003 0.0003 23 1 3.0094 -0.1539 1.0160 24 1 3.0097 -0.8017 -0.6420 25 1 4.9687 1.2777 0.6363 26 1 5.1153 0.5843 -0.9965 27 1 5.0432 2.3497 -0.7830 28 1 2.6028 0.7146 -2.4759 29 1 3.1623 3.7746 -0.6472 30 1 2.9274 6.0383 -1.6349 31 1 2.2670 6.2410 -4.0183 32 1 1.7336 1.0650 -6.4432 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389673078.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:42 Heat of formation + Delta-G solvation = 84.833017 kcal Electronic energy + Delta-G solvation = -15274.945705 eV Core-core repulsion = 12815.793569 eV Total energy + Delta-G solvation = -2459.152135 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.44542 -36.58292 -33.65172 -32.78491 -31.07544 -30.07220 -27.98979 -27.14893 -25.28638 -21.88141 -21.33841 -19.94347 -17.99550 -17.31521 -16.30738 -15.25614 -14.81810 -14.40400 -14.24964 -13.55855 -13.42406 -12.84303 -12.68205 -12.44586 -11.88988 -11.80627 -11.68805 -11.22698 -10.98006 -10.93644 -10.58032 -10.35061 -9.96744 -9.87322 -9.82279 -9.44665 -8.84681 -7.86577 -7.44986 -6.44845 -6.29150 -4.42579 2.90974 3.07349 3.10065 3.13504 3.17168 3.29080 3.34163 4.01647 4.23303 4.59069 4.88092 5.17867 5.42742 5.54977 5.73181 5.82980 5.96220 6.10902 6.19044 6.22271 6.27252 6.52513 6.68928 6.90886 6.94642 7.00950 7.29536 7.65422 7.86570 7.89366 7.97581 8.22024 8.42561 8.74739 8.85431 9.17759 10.29708 10.45376 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026229 B = 0.007481 C = 0.006561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.248265 B = 3741.873649 C = 4266.831875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.179 4.179 3 C -0.018 4.018 4 C 0.166 3.834 5 H 0.078 0.922 6 C -0.167 4.167 7 N -0.730 5.730 8 C 0.415 3.585 9 C -0.368 4.368 10 C -0.032 4.032 11 C -0.318 4.318 12 C 0.293 3.707 13 C -0.436 4.436 14 H 0.083 0.917 15 C 0.072 3.928 16 N -0.716 5.716 17 Si 0.904 3.096 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.262 1.262 21 N -0.532 5.532 22 H 0.213 0.787 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.394 0.606 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.630 -4.134 7.686 8.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.179 4.179 3 C -0.056 4.056 4 C 0.058 3.942 5 H 0.096 0.904 6 C -0.226 4.226 7 N -0.367 5.367 8 C 0.175 3.825 9 C -0.394 4.394 10 C -0.057 4.057 11 C -0.341 4.341 12 C 0.166 3.834 13 C -0.468 4.468 14 H 0.101 0.899 15 C -0.153 4.153 16 N -0.338 5.338 17 Si 0.729 3.271 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.186 1.186 21 N -0.254 5.254 22 H 0.230 0.770 23 H 0.112 0.888 24 H 0.106 0.894 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.229 0.771 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.529 -5.017 7.310 8.997 hybrid contribution -0.232 0.520 -0.487 0.749 sum 1.297 -4.497 6.822 8.273 Atomic orbital electron populations 1.24798 0.95921 1.00856 1.01277 1.22917 0.94399 1.00374 1.00200 1.19068 0.85278 0.98814 1.02396 1.20615 0.93789 0.95663 0.84101 0.90388 1.22308 0.96260 1.03129 1.00882 1.44191 1.77703 1.05431 1.09328 1.18510 0.89511 0.84184 0.90298 1.20635 1.26449 0.92727 0.99557 1.20592 0.95273 0.95280 0.94543 1.21524 1.18712 0.98329 0.95578 1.18207 0.87000 0.85549 0.92677 1.19570 1.39863 0.93997 0.93413 0.89936 1.26042 0.93780 0.95101 1.00399 1.70161 1.29545 0.98059 1.36007 0.86379 0.79001 0.79031 0.82730 1.19601 1.20287 1.18578 1.68221 1.23936 1.25996 1.07210 0.77025 0.88800 0.89389 0.92547 0.92549 0.91561 0.77102 0.89100 0.89045 0.88799 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.16 19.25 29.55 0.57 -2.59 16 2 C -0.18 -2.75 13.06 -37.12 -0.48 -3.24 16 3 C -0.02 -0.24 5.25 -29.52 -0.16 -0.39 16 4 C 0.17 2.59 2.23 -67.93 -0.15 2.44 16 5 H 0.08 1.31 6.43 -51.93 -0.33 0.97 16 6 C -0.17 -2.29 9.40 37.16 0.35 -1.94 16 7 N -0.73 -14.88 4.94 -53.91 -0.27 -15.14 16 8 C 0.41 10.31 7.63 -155.32 -1.18 9.12 16 9 C -0.37 -8.63 8.84 -38.87 -0.34 -8.98 16 10 C -0.03 -0.77 10.15 -39.40 -0.40 -1.17 16 11 C -0.32 -8.26 9.83 -38.65 -0.38 -8.64 16 12 C 0.29 8.34 6.54 -85.00 -0.56 7.79 16 13 C -0.44 -12.08 9.13 -37.75 -0.34 -12.43 16 14 H 0.08 2.15 7.86 -52.48 -0.41 1.74 16 15 C 0.07 1.88 5.49 -17.35 -0.10 1.78 16 16 N -0.72 -19.42 11.48 55.55 0.64 -18.79 16 17 Si 0.90 19.09 29.56 -169.99 -5.03 14.07 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 21 N -0.53 -15.02 7.91 -10.33 -0.08 -15.10 16 22 H 0.21 2.48 7.80 -54.08 -0.42 2.06 16 23 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.05 7.64 -51.93 -0.40 0.66 16 28 H 0.39 8.18 8.72 -40.82 -0.36 7.83 16 29 H 0.09 1.90 6.04 -52.49 -0.32 1.58 16 30 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.09 2.27 8.06 -52.49 -0.42 1.84 16 32 H 0.27 6.62 8.29 -40.82 -0.34 6.28 16 LS Contribution 283.49 15.07 4.27 4.27 Total: -1.00 -30.94 283.49 -7.55 -38.49 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -3.91 Total: 10.43 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -3.18 Total: -18.24 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.29 Total: -49.03 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.94 -7.55 -38.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389673078.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.327 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds