Wall clock time and date at job start Mon Mar 30 2020 03:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47162 * 158.65713 * 3 2 1 5 5 H 1.08997 * 109.47142 * 55.00209 * 4 3 2 6 6 C 1.52998 * 109.47199 * 175.00049 * 4 3 2 7 7 N 1.46500 * 109.47286 * 295.00077 * 4 3 2 8 8 C 1.38819 * 120.00091 * 154.99793 * 7 4 3 9 9 C 1.39796 * 119.58583 * 0.02562 * 8 7 4 10 10 C 1.38597 * 119.48997 * 179.97438 * 9 8 7 11 11 C 1.38384 * 118.68467 * 0.02562 * 10 9 8 12 12 C 1.40559 * 119.15044 * 359.97438 * 11 10 9 13 13 C 1.41311 * 119.78922 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99532 * 353.78366 * 13 12 11 15 15 C 1.40020 * 120.00223 * 173.78214 * 13 12 11 16 16 N 1.30747 * 120.00284 * 6.34814 * 15 13 12 17 17 Si 1.86800 * 120.00074 * 186.35347 * 15 13 12 18 18 H 1.48506 * 109.47413 * 94.98289 * 17 15 13 19 19 H 1.48503 * 109.47351 * 214.98331 * 17 15 13 20 20 H 1.48504 * 109.47104 * 334.98064 * 17 15 13 21 21 N 1.31958 * 119.58422 * 179.72881 * 8 7 4 22 22 H 4.44652 * 5.63269 * 180.02562 * 4 1 2 23 23 H 1.09002 * 109.47054 * 278.66098 * 3 2 1 24 24 H 1.09006 * 109.47099 * 38.65940 * 3 2 1 25 25 H 1.08998 * 109.47297 * 300.00040 * 6 4 3 26 26 H 1.09001 * 109.47430 * 60.00060 * 6 4 3 27 27 H 1.09003 * 109.47122 * 179.97438 * 6 4 3 28 28 H 0.97001 * 120.00095 * 334.99733 * 7 4 3 29 29 H 1.08002 * 120.25396 * 359.95924 * 9 8 7 30 30 H 1.08000 * 120.65922 * 180.02562 * 10 9 8 31 31 H 1.08000 * 120.42962 * 179.97438 * 11 10 9 32 32 H 0.96996 * 120.00273 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.3444 -0.5250 5 1 2.7205 2.1526 0.0629 6 6 4.6802 1.3925 -0.4086 7 7 2.7678 1.4987 -1.9293 8 6 2.6366 2.7672 -2.4778 9 6 2.8769 3.8914 -1.6823 10 6 2.7459 5.1569 -2.2321 11 6 2.3778 5.2687 -3.5614 12 6 2.1499 4.1007 -4.3093 13 6 1.7730 4.1992 -5.6676 14 1 1.5631 5.1660 -6.1010 15 6 1.6716 3.0435 -6.4517 16 7 1.8035 1.8655 -5.9000 17 14 1.3480 3.1848 -8.2860 18 1 2.6378 3.1427 -9.0210 19 1 0.4906 2.0549 -8.7259 20 1 0.6584 4.4690 -8.5696 21 7 2.2923 2.8966 -3.7450 22 1 -1.0502 -0.0003 0.0003 23 1 3.0094 -0.1539 1.0160 24 1 3.0097 -0.8017 -0.6420 25 1 4.9687 1.2777 0.6363 26 1 5.1153 0.5843 -0.9965 27 1 5.0432 2.3497 -0.7830 28 1 2.6028 0.7146 -2.4759 29 1 3.1623 3.7746 -0.6472 30 1 2.9274 6.0383 -1.6349 31 1 2.2670 6.2410 -4.0183 32 1 1.7336 1.0650 -6.4432 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389673078.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:42 Heat of formation + Delta-G solvation = 66.823889 kcal Electronic energy + Delta-G solvation = -15275.726639 eV Core-core repulsion = 12815.793569 eV Total energy + Delta-G solvation = -2459.933070 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.23818 -38.06923 -35.46404 -34.24242 -32.66492 -31.90684 -29.75675 -28.26070 -27.20788 -23.54582 -23.14339 -21.56357 -19.30289 -19.06288 -18.03005 -16.80594 -16.55847 -16.14414 -15.55563 -15.26955 -14.91984 -14.46825 -14.07036 -13.91273 -13.59027 -13.28210 -12.89598 -12.86786 -12.70665 -12.56285 -12.31726 -12.02101 -11.70715 -11.28625 -11.06832 -11.01803 -10.63769 -9.82678 -9.42255 -8.25674 -8.22909 -6.46866 1.07155 1.36450 1.40735 1.54966 1.58140 1.90073 1.95192 2.25043 2.69082 2.92902 3.54153 4.00135 4.06263 4.26758 4.42453 4.44792 4.67530 4.77332 4.83980 4.91647 4.99258 5.01889 5.08176 5.16846 5.21084 5.39834 5.44604 5.73905 5.98224 6.10215 6.23715 6.59496 6.75080 6.85565 6.97504 7.24788 8.36436 8.52340 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026229 B = 0.007481 C = 0.006561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.248265 B = 3741.873649 C = 4266.831875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.203 4.203 3 C -0.013 4.013 4 C 0.161 3.839 5 H 0.069 0.931 6 C -0.159 4.159 7 N -0.726 5.726 8 C 0.399 3.601 9 C -0.366 4.366 10 C -0.031 4.031 11 C -0.347 4.347 12 C 0.258 3.742 13 C -0.474 4.474 14 H 0.085 0.915 15 C 0.026 3.974 16 N -0.752 5.752 17 Si 0.986 3.014 18 H -0.264 1.264 19 H -0.268 1.268 20 H -0.256 1.256 21 N -0.567 5.567 22 H 0.233 0.767 23 H 0.132 0.868 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.060 0.940 27 H 0.040 0.960 28 H 0.389 0.611 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.101 0.899 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.109 -4.641 8.542 9.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.204 4.204 3 C -0.049 4.049 4 C 0.056 3.944 5 H 0.087 0.913 6 C -0.217 4.217 7 N -0.361 5.361 8 C 0.158 3.842 9 C -0.392 4.392 10 C -0.055 4.055 11 C -0.370 4.370 12 C 0.131 3.869 13 C -0.506 4.506 14 H 0.103 0.897 15 C -0.196 4.196 16 N -0.375 5.375 17 Si 0.806 3.194 18 H -0.189 1.189 19 H -0.193 1.193 20 H -0.180 1.180 21 N -0.290 5.290 22 H 0.249 0.751 23 H 0.150 0.850 24 H 0.117 0.883 25 H 0.113 0.887 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.223 0.777 29 H 0.137 0.863 30 H 0.146 0.854 31 H 0.119 0.881 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.023 -5.537 8.223 10.118 hybrid contribution -0.365 0.645 -0.581 0.942 sum 1.658 -4.892 7.642 9.224 Atomic orbital electron populations 1.25575 0.97088 1.00513 1.01305 1.23648 0.95630 1.00712 1.00361 1.19173 0.83904 0.97241 1.04610 1.20904 0.95225 0.97093 0.81216 0.91318 1.22222 0.94265 1.01883 1.03348 1.44438 1.76847 1.03669 1.11099 1.18963 0.89032 0.86325 0.89865 1.20980 1.25201 0.92322 1.00703 1.21010 0.93680 0.96829 0.94019 1.21679 1.20482 0.98026 0.96827 1.18693 0.87814 0.86672 0.93694 1.19919 1.41573 0.94957 0.94119 0.89680 1.26963 0.92941 0.94230 1.05446 1.70258 1.30179 0.98885 1.38132 0.85153 0.79052 0.79321 0.75847 1.18933 1.19276 1.17951 1.68198 1.25473 1.26337 1.08979 0.75057 0.84988 0.88257 0.88705 0.92126 0.94046 0.77677 0.86307 0.85413 0.88108 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -6.58 19.25 74.32 1.43 -5.15 16 2 C -0.20 -5.95 13.06 31.12 0.41 -5.55 16 3 C -0.01 -0.29 5.25 28.79 0.15 -0.14 16 4 C 0.16 4.72 2.23 44.99 0.10 4.82 16 5 H 0.07 2.15 6.43 -2.39 -0.02 2.14 16 6 C -0.16 -3.92 9.40 71.98 0.68 -3.24 16 7 N -0.73 -29.33 4.94 -324.47 -1.60 -30.93 16 8 C 0.40 19.98 7.63 133.42 1.02 21.00 16 9 C -0.37 -16.90 8.84 22.73 0.20 -16.70 16 10 C -0.03 -1.45 10.15 22.39 0.23 -1.23 16 11 C -0.35 -18.33 9.83 22.87 0.22 -18.10 16 12 C 0.26 15.21 6.54 40.18 0.26 15.48 16 13 C -0.47 -27.08 9.13 23.46 0.21 -26.86 16 14 H 0.09 4.58 7.86 -2.91 -0.02 4.56 16 15 C 0.03 1.37 5.49 85.29 0.47 1.84 16 16 N -0.75 -41.81 11.48 21.84 0.25 -41.56 16 17 Si 0.99 39.63 29.56 68.60 2.03 41.66 16 18 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 19 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 20 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 21 N -0.57 -32.90 7.91 -186.58 -1.48 -34.38 16 22 H 0.23 5.20 7.80 -4.41 -0.03 5.16 16 23 H 0.13 2.07 8.14 -2.39 -0.02 2.06 16 24 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 25 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.04 1.23 7.64 -2.39 -0.02 1.21 16 28 H 0.39 16.28 8.72 -92.71 -0.81 15.47 16 29 H 0.12 4.71 6.04 -2.91 -0.02 4.69 16 30 H 0.13 4.90 8.06 -2.91 -0.02 4.88 16 31 H 0.10 4.98 8.06 -2.91 -0.02 4.95 16 32 H 0.28 13.82 8.29 -92.71 -0.77 13.05 16 Total: -1.00 -68.97 283.49 4.89 -64.08 By element: Atomic # 1 Polarization: 34.67 SS G_CDS: 0.31 Total: 34.98 kcal Atomic # 6 Polarization: -39.22 SS G_CDS: 5.38 Total: -33.84 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -2.83 Total: -106.88 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -68.97 4.89 -64.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389673078.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.905 kcal (2) G-P(sol) polarization free energy of solvation -68.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds