Wall clock time and date at job start Mon Mar 30 2020 03:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47438 * 2 1 4 4 C 1.50707 * 109.46795 * 240.00418 * 2 1 3 5 5 H 1.07998 * 119.99666 * 239.99643 * 4 2 1 6 6 C 1.37875 * 120.00051 * 60.00423 * 4 2 1 7 7 N 1.31516 * 120.00181 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99813 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47258 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46822 * 119.99509 * 8 6 4 11 11 H 1.48492 * 109.47067 * 239.99800 * 8 6 4 12 12 N 1.46502 * 109.47283 * 120.00629 * 2 1 3 13 13 C 1.39969 * 119.99499 * 274.99826 * 12 2 1 14 14 C 1.39422 * 119.88724 * 0.02562 * 13 12 2 15 15 C 1.37662 * 120.59827 * 180.02562 * 14 13 12 16 16 C 1.39102 * 120.02208 * 359.97401 * 15 14 13 17 17 N 1.37951 * 133.33257 * 180.33860 * 16 15 14 18 18 H 0.97004 * 125.07353 * 359.97438 * 17 16 15 19 19 C 1.36787 * 109.84946 * 180.12095 * 17 16 15 20 20 C 1.34250 * 109.93710 * 359.55861 * 19 17 16 21 21 C 1.40613 * 119.55925 * 359.97438 * 16 15 14 22 22 C 1.38212 * 119.88309 * 179.97438 * 13 12 2 23 23 H 1.09002 * 109.47545 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47010 * 299.99637 * 1 2 3 25 25 H 1.09006 * 109.47202 * 59.99910 * 1 2 3 26 26 H 0.96999 * 119.99655 * 180.02562 * 7 6 4 27 27 H 0.96997 * 120.00178 * 94.99513 * 12 2 1 28 28 H 1.07995 * 119.70301 * 359.97055 * 14 13 12 29 29 H 1.07999 * 119.98337 * 179.97438 * 15 14 13 30 30 H 1.08002 * 125.03448 * 179.82779 * 19 17 16 31 31 H 1.08001 * 126.48657 * 180.30428 * 20 19 17 32 32 H 1.07994 * 120.20188 * 0.04963 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8299 -2.6034 8 14 2.3224 -1.1193 -4.0081 9 1 3.1472 -2.2862 -3.6040 10 1 1.1676 -1.5863 -4.8166 11 1 3.1471 -0.1856 -4.8161 12 7 2.0183 -0.6907 1.1961 13 6 2.1520 0.0075 2.4018 14 6 1.8192 1.3601 2.4619 15 6 1.9456 2.0611 3.6399 16 6 2.4083 1.4206 4.7847 17 7 2.6311 1.8404 6.0798 18 1 2.4794 2.7406 6.4079 19 6 3.1010 0.7987 6.8314 20 6 3.1889 -0.3077 6.0761 21 6 2.7440 0.0563 4.7287 22 6 2.6125 -0.6466 3.5289 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.7082 1.1611 -3.4844 27 1 2.2490 -1.6319 1.1525 28 1 1.4599 1.8626 1.5761 29 1 1.6853 3.1087 3.6751 30 1 3.3586 0.8564 7.8787 31 1 3.5233 -1.2820 6.4007 32 1 2.8701 -1.6943 3.4819 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389946629.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:36 Heat of formation + Delta-G solvation = 38.306441 kcal Electronic energy + Delta-G solvation = -15156.063242 eV Core-core repulsion = 12694.893563 eV Total energy + Delta-G solvation = -2461.169679 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.82267 -38.95085 -36.31855 -34.15730 -32.68519 -31.02095 -29.39274 -28.11701 -27.19541 -23.74179 -23.10837 -21.61278 -20.99112 -18.96734 -18.63995 -17.33779 -16.95605 -16.48932 -15.65018 -15.19628 -14.66253 -14.62010 -14.29801 -14.00457 -13.80290 -13.48246 -13.36552 -13.17312 -12.87123 -12.59580 -12.33476 -12.20405 -12.03785 -11.57887 -11.03270 -10.64868 -10.53150 -10.03543 -8.63101 -8.18082 -7.68203 -6.31603 0.34580 1.04579 1.41907 1.43560 1.55130 2.01284 2.38738 2.48577 3.03710 3.12669 3.18444 3.98218 4.17679 4.41048 4.57259 4.63875 4.75373 4.80545 4.93710 5.02166 5.13705 5.20324 5.30785 5.42566 5.55102 5.64241 5.67640 5.82001 5.93195 6.03204 6.13900 6.36501 6.61376 6.93427 6.96700 7.30227 7.42380 8.88833 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.058976 B = 0.005408 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.651695 B = 5176.597444 C = 5418.369367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.278 3.722 3 H 0.009 0.991 4 C -0.546 4.546 5 H 0.059 0.941 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.966 3.034 9 H -0.268 1.268 10 H -0.278 1.278 11 H -0.280 1.280 12 N -0.738 5.738 13 C 0.194 3.806 14 C -0.188 4.188 15 C -0.080 4.080 16 C 0.016 3.984 17 N -0.590 5.590 18 H 0.427 0.573 19 C 0.080 3.920 20 C -0.254 4.254 21 C -0.078 4.078 22 C -0.200 4.200 23 H 0.026 0.974 24 H 0.022 0.978 25 H 0.066 0.934 26 H 0.265 0.735 27 H 0.391 0.609 28 H 0.110 0.890 29 H 0.139 0.861 30 H 0.214 0.786 31 H 0.154 0.846 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.939 1.552 16.341 16.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.174 3.826 3 H 0.027 0.973 4 C -0.584 4.584 5 H 0.077 0.923 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.791 3.209 9 H -0.193 1.193 10 H -0.203 1.203 11 H -0.206 1.206 12 N -0.365 5.365 13 C 0.088 3.912 14 C -0.211 4.211 15 C -0.101 4.101 16 C -0.090 4.090 17 N -0.196 5.196 18 H 0.266 0.734 19 C -0.048 4.048 20 C -0.280 4.280 21 C -0.083 4.083 22 C -0.225 4.225 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.224 0.776 28 H 0.128 0.872 29 H 0.156 0.844 30 H 0.230 0.770 31 H 0.172 0.828 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.754 1.927 16.062 16.410 hybrid contribution 0.091 -0.328 -1.187 1.235 sum 2.845 1.599 14.875 15.229 Atomic orbital electron populations 1.22002 0.98927 0.99027 0.99734 1.18307 0.90515 0.91957 0.81808 0.97321 1.21587 1.32067 1.13287 0.91487 0.92298 1.25674 0.94960 0.95668 1.01864 1.70008 1.37036 1.23799 1.24438 0.85389 0.78126 0.78519 0.78854 1.19262 1.20339 1.20552 1.45172 1.72183 1.11935 1.07190 1.17951 0.94732 0.91813 0.86664 1.20565 1.08590 0.93567 0.98357 1.19922 1.00817 0.99746 0.89645 1.18123 1.09112 0.94646 0.87156 1.41713 1.58457 1.12818 1.06566 0.73440 1.22420 0.98205 0.85889 0.98335 1.21884 1.14316 1.00543 0.91291 1.19291 1.01509 0.93091 0.94394 1.19839 1.11833 0.99807 0.91062 0.95458 0.95877 0.91497 0.92544 0.77556 0.87161 0.84351 0.76952 0.82841 0.86363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.93 9.20 71.98 0.66 -6.27 16 2 C 0.28 14.40 2.25 44.25 0.10 14.50 16 3 H 0.01 0.51 6.47 -2.39 -0.02 0.50 16 4 C -0.55 -30.00 8.73 25.60 0.22 -29.78 16 5 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 6 C 0.02 1.00 5.30 84.65 0.45 1.44 16 7 N -0.91 -51.83 11.32 21.45 0.24 -51.58 16 8 Si 0.97 43.11 29.54 68.60 2.03 45.13 16 9 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 12 N -0.74 -33.45 5.25 -322.39 -1.69 -35.14 16 13 C 0.19 8.15 6.63 38.12 0.25 8.41 16 14 C -0.19 -7.61 8.82 22.42 0.20 -7.42 16 15 C -0.08 -2.67 10.06 22.34 0.22 -2.45 16 16 C 0.02 0.49 7.27 38.97 0.28 0.77 16 17 N -0.59 -12.53 6.08 -187.50 -1.14 -13.67 16 18 H 0.43 5.92 8.96 -92.71 -0.83 5.09 16 19 C 0.08 1.48 11.81 83.01 0.98 2.46 16 20 C -0.25 -6.47 11.08 23.51 0.26 -6.21 16 21 C -0.08 -2.62 6.37 -20.20 -0.13 -2.74 16 22 C -0.20 -7.54 9.94 22.61 0.22 -7.31 16 23 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.02 1.06 7.69 -2.39 -0.02 1.04 16 25 H 0.07 3.64 6.07 -2.38 -0.01 3.62 16 26 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 27 H 0.39 16.70 8.55 -92.71 -0.79 15.91 16 28 H 0.11 4.82 6.06 -2.91 -0.02 4.81 16 29 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 30 H 0.21 1.70 8.06 -2.91 -0.02 1.68 16 31 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 32 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -64.92 271.20 2.69 -62.22 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: -0.47 Total: 27.64 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 3.73 Total: -34.60 kcal Atomic # 7 Polarization: -97.80 SS G_CDS: -2.59 Total: -100.39 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -64.92 2.69 -62.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389946629.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.531 kcal (2) G-P(sol) polarization free energy of solvation -64.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds